chmp2a (bc2,chmp2a,LOC107552765,LOC107727322,LOC107582752,LOC106589279)


Basic Information

Item Value
gene id chmp2a
gene name bc2,chmp2a,LOC107552765,LOC107727322,LOC107582752,LOC106589279
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11820541 ~ 11823268 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253494.1
TGACATTTATATGCGGAAGAGGTTAGAGTGGGGAAAACAATCGGGTGGATCGACAAACGCTAACTTTAAATAaggtttaaaagaaacaaaggaCGTCGTGATATTTGGCCTGTTCAGCTACTGGTATCTCTGGTGGACGTTTTCCACATAAAGAAAAGTCAAGATGGAGTTCCTGTTTGGAAGAAGAAAGACTCCAGAGGAGATGCTCAGACAAAATCAGAGAGCGTTAAATCGAGCCATGAGAGATCTAGACCGAGAACGACAGAGACTGGAGcaacaggaaaagaaaataattgctGACATTAAGAAAATGGCCAAACAAGGACAGATGGATGCTGTGAAGATTATGGCTAAGGACTTGGTGCGCACAAGACGATATGTCAAGAAATTCATCATGATGAGAGCCAATATTCAAGCTGTCAGCCTTAAAATCCAAACCCTCAAATCAAACAACAGCATGGCGCAGGCCATGAAAGGAGTTACCAAAGCTATGGCCACCATGAACAGACAGCTGAAGTTGCCACAGATTCAGAAGATCATGATGGAGTTCGAGCGCCAAAGTGAAATAATGGACATGAAGGAGGAAATGATGAACGATGCAATTGACGACGCAATGGGCGACGAAGACGACGAAGAGGAGAGTGATGCTGTTGTTTCTCAAGTTCTGGATGAGCTGGGTCTGAATCTTTCCGATGAACTTTCAAATCTGCCTTCTACTGGAGGAAGCCTTTCGGTTGCGGCTGGGAAGAAAGCTGAACCGCAGGCTACACTGGCGGATGCCGACGCTGACTTGGAGGAGAGGCTGAACAACCTCAGGAGAGACTGAGAATGAAAGGACTCTGAGTAAAGGTTTCGATTCAGAACTGTCTGCACAAAGCTCGCTTCACTAAAATGTAGACTGATGCAAAGAAAAGAGGGAGGATGAGAATGCTGTGTTTTCTTGACATTAGGCGCTTTAATgcgtcttttttttgtttttctgtcttctTTTATGACATGTGCTGTATAAATATTACCAAACGCGTAACCCAAATGAAGATGCAATGCATCAGGCTCATCTCAAGCCTTCTGTTTAGACAAATCCTTTATAAAGGAGATCAAATCAACAAAGAATCTGTTACCCCAAGAATCCAACTTGAACTTTAACactaaatattcattattataaaaaacacatcatatcttcattttaataaacacagataTTGATACTgatcttttatataaatagtgcaaaatGGAGTCATTCCAGTTTTCAATCTGTTCATAAGGGTACATCAGAAGATTACCTTTTAAATACTTGTGCTATTATACTATCATCATCTTCTAATAATATATTCATCTTGATCTTTTAGTGGTAAATATCTTCGTATAATAAATGTGGTGGTTTCTATTTTTTCTCAAAGTGATTGAATCTCTAGTTCCCACACCCTGGCCTGTTCGGTAAACCATAAACCTTCGTAAACTCTGAAGTTTGTGCAAGGCAACATCTTACAATAACGTCGGTCATTCAATTATAAAAGAAACTCGGAAGCAGTTTTCCAAAGGTTGTTTTATCTAAAAGTTATTGAAAATTAACAAGAAATATTAGTGTATTTATCTCATGGCGAATCAAGAGGtggtatattttgaaaaaatgttattttgcattttttttttttgggttcaataaacatttttcacactTAC

Function

symbol description
chmp2a Predicted to be involved in several processes, including endosome transport via multivesicular body sorting pathway; exit from mitosis; and late endosome to vacuole transport. Predicted to act upstream of or within vacuolar transport. Predicted to be located in nuclear envelope. Predicted to be part of ESCRT III complex. Predicted to be active in multivesicular body. Orthologous to human CHMP2A (charged multivesicular body protein 2A).

NR:

description
PREDICTED: charged multivesicular body protein 2a-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0031902 late endosome membrane cellular_component

KEGG:

id description
K12191 CHMP2A; charged multivesicular body protein 2A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253494.1 True 1689 mRNA 0.39 6 11820541 11823268

Neighbor

gene id symbol gene type direction distance location
zeb1b zeb1b,LOC107706887,LOC107669492,LOC107552760,LOC107666916,LOC107582755,LOC107727309 coding downstream 78580 11685789 ~ 11741961 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding downstream 186658 11630324 ~ 11633883 (-)
kctd2 kctd2,LOC107666921,LOC107727321,LOC107582756,LOC107669473,LOC108410512 coding downstream 190653 11624098 ~ 11629888 (-)
slc16a5a slc16a5a,slc16a5,LOC107666920,LOC107669499,LOC107706881,LOC107582757,LOC107736668 coding downstream 199539 11612742 ~ 11621002 (-)
tap2t si:dkey-57h18.2,LOC107582758,LOC107727316,LOC107657063 coding downstream 208247 11607024 ~ 11612294 (-)
psme3 psme3,LOC107669474,LOC107582747,LOC107706898,LOC107727296,LOC107666924 coding upstream 109155 11932423 ~ 11936456 (-)
dhx8 dhx8,LOC107706906 coding upstream 280610 12103878 ~ 12112775 (-)
uts2r2 ogfod3,zgc:195081,LOC107743776,LOC107691211,LOC106959269 coding upstream 624768 12448036 ~ 12472207 (-)
psmd11b psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212 coding upstream 649621 12472889 ~ 12480834 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773,LOC107677861,LOC107675020 coding upstream 665501 12488769 ~ 12548929 (-)
G87552 NA non-coding downstream 20060 11799592 ~ 11800481 (-)
G87551 NA non-coding downstream 21198 11799005 ~ 11799343 (-)
G87547 NA non-coding downstream 29615 11753049 ~ 11790926 (-)
LOC122355534 NA non-coding downstream 240182 11579188 ~ 11580359 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 501620 11316383 ~ 11318921 (-)
G87593 NA non-coding upstream 67666 11890934 ~ 11894512 (-)
G87603 NA non-coding upstream 113773 11937041 ~ 11937682 (-)
G87605 NA non-coding upstream 120804 11944072 ~ 11945631 (-)
G87607 NA non-coding upstream 123639 11946907 ~ 11947734 (-)
G87610 NA non-coding upstream 147261 11970529 ~ 11970824 (-)
G87489 NA other downstream 497938 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 774652 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 813587 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1880692 9311653 ~ 9939849 (-)
G87569 NA other upstream 9611 11832879 ~ 11835612 (-)
G87608 NA other upstream 125272 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 826115 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 928636 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1601040 13424308 ~ 13432195 (-)

Expression


Co-expression Network