LOC122355360 (LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586)



Basic Information


Item Value
gene id LOC122355360
gene name LOC107598582,LOC107654016,LOC107732180,LOC107708889,LOC107664586
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 292041 ~ 298114 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence


>XM_043253532.1
TTACTTTTTAGGGTCTATATTTGTGTAATGTTGGTCCTAAAGTTGGTTTGTGCATTCTATTACTCCTGATCACCTCTATTTAACTCATTTTCTCCAACATAGCCAAAGTATAATAAAGGGCATGTGTCTTGTGCATGTGGCCCTGTCAATCATCTCAGTATGTTCCTCTGTTCTACACCATTCTCTGAATGGTGCGACTGTACATGTGACCGTACAACAGAGACCAGCCCCCTCTCGGTCACTCAGCTACCTCTCTTAATTCCCTCCGGTGGATCCAGCGACTGCTCTTCCAAGTACTTGAGAAAACGTTGGCTCTAGAGTGgatacaaacacatttttataaactgtTTGACTGTACTTGTACGGGGGAGGGACTGCAAGATGGTAGCTTCACGTAGCTGGCTGTTGGGGCTTATTGTAGCTCTGCTTTGCACTGGACCTTTCGGGGATTCTGTGCAGGCTGAAGAAAGGCTGAGAAGTGAGGAAGTCGAGGAGCTGAACGCTCTGGACCCTACTGGAGGGGAGAAAGAGGAGGTGGCTGATGAGGAGGAGGGTGGAGATGTATCTGAAGAAGCAGATGAAGACACGGTAGGAGATGGGGAAGTAGAGGAAGCTTCTGAGGAAGAGGTGACACCAGAAGAGGAGATAACTAATGAGGCTGAAGTAGCGGAAGACGAGGATGAGAATGAGGCAGAAGAAGGAGCAGAGGAAGATTATGTGGCTGAAGGAGtaacagaggaagaggaagaagaagaagaagaggaggacgaGGAAGTATCAGAGGAAGATGATGTGGCAGAAGGATTAATAGAAGAAGAGGAAGCagcagaggaggaagaagaggaggaataCACAAATGAAGAggtagaggaggaggaggaagaaggaTTAGCAGAAGAAGACAATTCAGCACAACAGATACCGGAGGAAGAtgaaacagcagcagaggatGAGGGAGCACCaggtgaggaagaggaagaggaagatgaggaggaggaggaaactGCTGATGAAGATAATGAGGAGACTGGAGATGAAGGTGAAGAGACCATGGTTGAAGGTACTGTTGAAGAAACTGACAATGAGGAATATTTAGAGGCGGAAGAGTTGGTCTCCACAAAGGATACAGAGTATAGCTCAGGCTCTTTCTGTGCCCTTTGCTCAGTCTGCGAGCACTGCGGTATCTGTGACAAATGTCCCTGTGAGGAAGGGGACGTGTCAGCGCACTGCAATCACTGTGAAGATTGTTCCTACTGTTACATTTGTCCTGTGATCTGTGAAACAGTCTGCCAGCCAGgtgGAATTCTTGATGTACTGAGCGGTTCTCTCTACCAGACTGTGAACACCTTGCTCTGAATCCGTTCAGCATTCTTCACAACACGTCTCTTGGTGAACAGAGGAACTACAGACTACCATTCAAATCATTCATTTGTAGGCCTGTCTATTTGACTCTCAAGATCGGTGGACTTTTGACTCTGAGGCCTTTGATGAGAGCGGACAACTGATCTTAAGTATAAGCCAGGAAATGCCAACGCCAATATTTACCATTTAATGGCACTTCAAAGGTGATTTCACAGGCtgcattaaatgaataacaaataTGGTTATGTGCAAATGATCTCATTAGGtacttttacaatattactgctttttgactgtatttttgatcaaataaatgcagtctttgtgAA
>XM_043253533.1
TTTTACAGAACTAGTTAATATACTCCTAAAAGAAGGTATgtgttcttattattttatggaCAAAAAGCGGCCTAGTTTTCCAGTACGACTCTATGAATTCTATGTTGAGAGAAAACTTCTAAAGGAACCTTTAGAGAGTGAAAGTTCCTGAAAATATCCTGCGAGTAATTGCAAATCCAGTTCATTTTCACCATCTGTTGACGTAAACGCTAGCAGGTGCAGACAGCAGTAGATAACAGGGTATACAGTGATTAAGATGTATAGAGGTGACCTTTAGAAAAGGACTCGATATAGGGAAAGcgtgagtgagtgagcgagcGAGGGATGGAGTTTCAGCGGCTGAGTGATCTATTGAAGGTCAGATCATGCAGTGTACTGCTACTATTGAGCGCCTCTTTATATAGCTTCCCACCCACCAGACCCAGCCAGGCCTAAGGAGGGTCAAAATGGGACTGCCTTTACTTTTTAGGGTCTATATTTGTGTAATGTTGGTCCTAAAGTTGGTTTGTGCATTCTATTACTCCTGATCACCTCTATTTAACTCATTTTCTCCAACATAGCCAAAGTATAATAAAGGGCATGTGTCTTGTGCATGTGGCCCTGTCAATCATCTCAGTATGTTCCTCTGTTCTACACCATTCTCTGAATGGTGCGACTGTACATGTGACCGTACAACAGAGACCAGCCCCCTCTCGGTCACTCAGCTACCTCTCTTAATTCCCTCCGGTGGATCCAGCGACTGCTCTTCCAAGTACTTGAGAAAACGTTGGCTCTAGAGTGgatacaaacacatttttataaactgtTTGACTGTACTTGTACGGGGGAGGGACTGCAAGATGGTAGCTTCACGTAGCTGGCTGTTGGGGCTTATTGTAGCTCTGCTTTGCACTGGACCTTTCGGGGATTCTGTGCAGGCTGAAGAAAGGCTGAGAAGTGAGGAAGTCGAGGAGCTGAACGCTCTGGACCCTACTGGAGGGGAGAAAGAGGAGGTGGCTGATGAGGAGGAGGGTGGAGATGTATCTGAAGAAGCAGATGAAGACACGGTAGGAGATGGGGAAGTAGAGGAAGCTTCTGAGGAAGAGGTGACACCAGAAGAGGAGATAACTAATGAGGCTGAAGTAGCGGAAGACGAGGATGAGAATGAGGCAGAAGAAGGAGCAGAGGAAGATTATGTGGCTGAAGGAGtaacagaggaagaggaagaagaagaagaagaggaggacgaGGAAGTATCAGAGGAAGATGATGTGGCAGAAGGATTAATAGAAGAAGAGGAAGCagcagaggaggaagaagaggaggaataCACAAATGAAGAggtagaggaggaggaggaagaaggaTTAGCAGAAGAAGACAATTCAGCACAACAGATACCGGAGGAAGAtgaaacagcagcagaggatGAGGGAGCACCaggtgaggaagaggaagaggaagatgaggaggaggaggaaactGCTGATGAAGATAATGAGGAGACTGGAGATGAAGGTGAAGAGACCATGGTTGAAGAAACTGACAATGAGGAATATTTAGAGGCGGAAGAGTTGGTCTCCACAAAGGATACAGAGTATAGCTCAGGCTCTTTCTGTGCCCTTTGCTCAGTCTGCGAGCACTGCGGTATCTGTGACAAATGTCCCTGTGAGGAAGGGGACGTGTCAGCGCACTGCAATCACTGTGAAGATTGTTCCTACTGTTACATTTGTCCTGTGATCTGTGAAACAGTCTGCCAGCCAGgtgGAATTCTTGATGTACTGAGCGGTTCTCTCTACCAGACTGTGAACACCTTGCTCTGAATCCGTTCAGCATTCTTCACAACACGTCTCTTGGTGAACAGAGGAACTACAGACTACCATTCAAATCATTCATTTGTAGGCCTGTCTATTTGACTCTCAAGATCGGTGGACTTTTGACTCTGAGGCCTTTGATGAGAGCGGACAACTGATCTTAAGTATAAGCCAGGAAATGCCAACGCCAATATTTACCATTTAATGGCACTTCAAAGGTGATTTCACAGGCtgcattaaatgaataacaaataTGGTTATGTGCAAATGATCTCATTAGGtacttttacaatattactgctttttgactgtatttttgatcaaataaatgcagtctttgtgAA
>XM_043253534.1
ATATAGCTTCCCACCCACCAGACCCAGCCAGGCCTAAGGAGGGTCAAAATGGGACTGCCTTTACTTTTTAGGGTCTATATTTGTGTAATGTTGGTCCTAAAGTTGGTTTGTGCATTCTATTACTCCTGATCACCTCTATTTAACTCATTTTCTCCAACATAGCCAAAGTATAATAAAGGGCATGTGTCTTGTGCATGTGGCCCTGTCAATCATCTCAGTATGTTCCTCTGTTCTACACCATTCTCTGAATGGTGCGACTGTACATGTGACCGTACAACAGAGACCAGCCCCCTCTCGGTCACTCAGCTACCTCTCTTAATTCCCTCCGGTGGATCCAGCGACTGCTCTTCCAAGTACTTGAGAAAACGTTGGCTCTAGAGTGgatacaaacacatttttataaactgtTTGACTGTACTTGTACGGGGGAGGGACTGCAAGATGGTAGCTTCACGTAGCTGGCTGTTGGGGCTTATTGTAGCTCTGCTTTGCACTGGACCTTTCGGGGATTCTGTGCAGGCTGAAGAAAGGCTGAGAAGTGAGGAAGTCGAGGAGCTGAACGCTCTGGACCCTACTGGAGGGGAGAAAGAGGAGGTGGCTGATGAGGAGGAGGGTGGAGATGTATCTGAAGAAGCAGATGAAGACACGGTAGGAGATGGGGAAGTAGAGGAAGCTTCTGAGGTAGCGGAAGACGAGGATGAGAATGAGGCAGAAGAAGGAGCAGAGGAAGATTATGTGGCTGAAGGAGtaacagaggaagaggaagaagaagaagaagaggaggacgaGGAAGTATCAGAGGAAGATGATGTGGCAGAAGGATTAATAGAAGAAGAGGAAGCagcagaggaggaagaagaggaggaataCACAAATGAAGAggtagaggaggaggaggaagaaggaTTAGCAGAAGAAGACAATTCAGCACAACAGATACCGGAGGAAGAtgaaacagcagcagaggatGAGGGAGCACCaggtgaggaagaggaagaggaagatgaggaggaggaggaaactGCTGATGAAGATAATGAGGAGACTGGAGATGAAGGTGAAGAGACCATGGTTGAAGGTACTGTTGAAGAAACTGACAATGAGGAATATTTAGAGGCGGAAGAGTTGGTCTCCACAAAGGATACAGAGTATAGCTCAGGCTCTTTCTGTGCCCTTTGCTCAGTCTGCGAGCACTGCGGTATCTGTGACAAATGTCCCTGTGAGGAAGGGGACGTGTCAGCGCACTGCAATCACTGTGAAGATTGTTCCTACTGTTACATTTGTCCTGTGATCTGTGAAACAGTCTGCCAGCCAGgtgGAATTCTTGATGTACTGAGCGGTTCTCTCTACCAGACTGTGAACACCTTGCTCTGAATCCGTTCAGCATTCTTCACAACACGTCTCTTGGTGAACAGAGGAACTACAGACTACCATTCAAATCATTCATTTGTAGGCCTGTCTATTTGACTCTCAAGATCGGTGGACTTTTGACTCTGAGGCCTTTGATGAGAGCGGACAACTGATCTTAAGTATAAGCCAGGAAATGCCAACGCCAATATTTACCATTTAATGGCACTTCAAAGGTGATTTCACAGGCtgcattaaatgaataacaaataTGGTTATGTGCAAATGATCTCATTAGGtacttttacaatattactgctttttgactgtatttttgatcaaataaatgcagtctttgtgAA

Function


NR:

description
PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein-like

GO: NA

KEGG:

id description
K23450 HRC; sarcoplasmic reticulum histidine-rich calcium-binding protein

RNA


RNA id representative length rna type GC content exon number start site end site
XM_043253532.1 False 1691 mRNA 0.45 6 292041 297656
XM_043253533.1 True 2137 mRNA 0.45 6 292041 298114
XM_043253534.1 False 1709 mRNA 0.46 7 292041 297716

Neighbor


gene id symbol gene type direction distance location
LOC122355757 LOC107557351,LOC107719532,LOC107654013,LOC107708952,LOC107598581,LOC107664606,LOC107708954 coding downstream 1386 272266 ~ 290655 (-)
LOC122355213 zgc:92313,LOC107719557,LOC107708960,LOC107664633,LOC107598673,LOC107653945,LOC107557352 coding downstream 44476 242830 ~ 247565 (-)
LOC122355215 vkorc1,LOC107719575,LOC107598672,LOC107654009,LOC108413442 coding downstream 57363 233266 ~ 234678 (-)
LOC122355214 LOC107561990,LOC107575498 coding downstream 63711 223878 ~ 228330 (-)
LOC122355212 LOC107561990,LOC107575498 coding downstream 69168 218214 ~ 222873 (-)
LOC122355359 LOC107654014,LOC107664598,LOC107557378,LOC107708888 coding upstream 494 298608 ~ 318529 (-)
irf3 NA coding upstream 35463 333577 ~ 338993 (-)
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding upstream 65492 363606 ~ 381167 (-)
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding upstream 109242 407356 ~ 434276 (-)
LOC122355175 NA coding upstream 141756 439870 ~ 444825 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 93174 197400 ~ 198867 (-)
LOC122355221 LOC107561990,LOC107660458 non-coding downstream 94648 196901 ~ 197393 (-)
G84487 NA non-coding downstream 150960 140100 ~ 141081 (-)
G84492 LOC107565537,LOC107671635,LOC107690840 non-coding downstream 202467 88055 ~ 89574 (-)
LOC122355197 NA non-coding upstream 84458 382572 ~ 385022 (-)
LOC122355423 NA non-coding upstream 87775 385889 ~ 386457 (-)
G84547 NA non-coding upstream 179909 478023 ~ 478431 (-)
G84654 NA non-coding upstream 311953 610067 ~ 611847 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 361975 660089 ~ 663746 (-)
LOC122355191 dusp3b,LOC107753093,LOC107590411,LOC107688089,LOC107709997 other downstream 120746 168048 ~ 171295 (-)
G84486 emsy,LOC107671635,LOC107690840,LOC107722098,LOC107565537,LOC107747365 other downstream 162056 78617 ~ 129985 (-)
G84485 vaspa,LOC107722097,LOC107565535,LOC107710395,LOC107671612,LOC107575450 other downstream 169274 12045 ~ 122767 (-)
G84521 NA other upstream 21216 319330 ~ 321260 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other upstream 42159 340273 ~ 360482 (-)
LOC122355759 NA other upstream 186324 484438 ~ 490379 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other upstream 198850 496964 ~ 500219 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other upstream 245132 543246 ~ 552443 (-)

Expression



Co-expression Network