ercc4 (ercc4,LOC107734247,LOC107669240,LOC107692079)


Basic Information

Item Value
gene id ercc4
gene name ercc4,LOC107734247,LOC107669240,LOC107692079
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8325243 ~ 8331539 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253547.1
GTTCGTGACAGACATACACCAAGGAGGCACTGATTTTTCTTATGATGCGAAAATAGGCTTCCACGGTTAAGTTATGCTAAAAATATTcagtgcattttttatattaaaaaacggAAGCCATAAGCATCTGGAGTTTCATTTCATACACATTCATGCACGGTTAGGAGTGCGTCTCTTGTgaagttgtttgtgttttttgtgggAGTTCTACCCCCAGTACAGCAGGTGGCGCCGGCGTAACCGAACGTTAGAAACCCCGCGGCGTCACGTGACACGATAACGCCTTTTTGAAACACGAAGGCGAGCGAAACTTGCGTAATGTAAAAGAATATGATATAGCTCAAAAGTATAGCTTTTTGTTCGGTTCTGCGATTACGTGTGTGCTACCGGCAAGTATAGATATTAAATGGAAGCGCTGTACTTTAGTTCGTCCTGATAAAAAAAGCGGTAAAACTGCAAGACCGTTCATGTCATCCAGCAAAGCAGCTTCGGTCGCTCGTGAAGATGGCGAGCCCGCTGCTGGAGTACGAGACGGAGATGTTTCTGAGTTTGTTCAGCTCGGACGGCTTGCTGGTCACAGCCGAGGGGCTCGGGGTCGACCGTATTCTCTTACACTTCATGAGAGTCTATTCGGAGGAGGGCAGTCTGGTGCTCCTGTTAAACACGACCACTCCTGAACAGGAGTATTTTACAGAGCAGCTCCGCGCTGAAGGAGTAAGCCATCTTCCCCAGACTGTGACCAGCGATGTGCATAATAATGAAAGATATAACGTGTACACTAAAGGAGGAGTTCTCTTTGTGACCAGCCGCATCCTAGTGGTGGACTTCCTCACCGACCGAATTCCTGCTAACCTCATAACAGGAATCCTGGTGTATCGTGCGCATAAGATCATTGAGTCTTGTCAGGAGGCTTTCATTCTGAGACTTTATCGGCAGAAAAACAAGACCGGGTTCATCAAGGCCTTTACGGACAAGGCCACGTCCTTCTCTTCTGGCTTCTGTAAAGTCGAGCGTGTCATGAGAAACCTGTTTGTGAAGAAGCTCTTTCTTTGGCCAAgATTTCAAGCATCAGTGAACACAACGCTGGACAAACACAAGCCGGATGTGGTGGAGCTCCATGTGTCTCTGACTCCAGCGATGAGAGCCATTCAGAGCTCTATCCTGGACATCATGAACGCCTGCTTGAAAGAGCTGAAGCGCTACAATCCCACTCTGGAAGCAGAAGACCTCTCTCTGGAGAACAGCCTGGGCACTTCCTTTGAAAAAaCAATTCGCCATTATCTTGACCCATTGTGGCATCAGCTGGGGTCCAGGACCAAATCTCTCGTTCAGGACCTAAAGATTTTAAGAACCCTTCTTCTCTACCTCACGCAGTACGACTGTGTCACCTTCCTCAATCTGCTAGAGTCTTTAAGAACCAGCCAGAAAAGCTTCGGTAGCAATTCAGGTTGGTTATTCTTGGACTCGAGCACTTCAATGTTTGTAAATGCTCGCAGCCGCGTGTATTGCATGCGAGAGTCAAAGAAGAAACTAAAAGTTGGAGAGAACGACCAGAAACGAAGTGCTCTAGGCCCTCCGATAAGAGAGCTCGTGCTTGAGAAAAATCCAAAGTGGGAAGCGTTAACAGAGGTGCTACAagagattgagaaagaaaacagcagCTCCGAGCGTGAACCAGGCCGTGTGTTGATTTGCGCCAGTGATGACAGAACATGTGCTCAGCTGAAGGAATATATCCAAAAAGGAGCAGAGCACCTACTGAATCGCCTTTATTCACGCACCATTGGAAAAGAAGATCCTCAGCCTGATTTACTGAAGCTTGACAAAGGCTGGAGCAAGAAGGCCTCCGCTAAGAGCAAAGGGAAAAACGGgcggccaaaaaaaaaacaaaccgcCTCAAAGAAACCAACAAAGAATGACAGACCTTCAAGAGTCTCTCAGATGGAGAGGCAGGAAGACGGAGCTGAAAAGGACCTAATTGGAAACAGTGGAGATGAAGGAAGTTTggctgaagaggaggaggaggaggaagaagaagagattCTTCTTGATATTTCTTCCGATGACTACTACGGAATCCTTAAAGAGCCGTTGACTGTCATTCACCCTTTGAAGGGATGCAGCGACCCCTACAGTTTGACGCGGGTGTTGCACGAAGTCGACCccatgtttgttgttttgtatgaTGCAGAACTCAGTTTTGTGCGGCAACTTGAGATTTATAAAGCCAGCAGGCCAGGAAAACCTCTCCGtgtatattttcttatatatggAGGCTCGACAGAAGAACAGAGGTATCTTACAGTCTTGAGCAAGGAAAAACAAGCATTTGAGTACCTCATAAGggaAAAGGCCAGCATGGTCGTtccagaagagagagagggtaGGGAAGACACCAACCTAGATCTTGTCCGCAGTCAGGAACCTGCCAGTGCCGCCACCAACACCCGCAAAGCAGGGGGCCGTGAAGATGTTAAAGAGCCTCAGCGAATCATAGTTGACATGCGGGAGTTCCGCAGTGAGCTTCCTTCCCTCCTGCATCAACGGGGTCTCGACATTGAGCCCATCACCTTAGAGGTCGGCGACTACATATTGACTTCAGAGATCTGCGTGGAGCGCAAAAGCGTCAGCGATCTCATTGGGTCACTACAAAGCGGGCGTCTCTACACACAGTGCCTCTCTATGACTCGATTCTATCGCCGTCCGGTGCTGCTTATCGAGTTTGACCCCGCCAAGCCTTTCTCCCTCGTGGCCCGCAGTGATTTTCGTCAGGAGATTTCTGCCAGCGACGTCACATCTAAACTGACCCTCCTCACCCTCCATTTCCCCCGCCTGAGGCTGCTCTGGTGCCCGTCTCCCTACGTGACGGCAGAGCTGTTTCAGGAGCTCAAACGCGGCCGCCCGGAGCCCGACGCCGCCACAGCTCAGGCCGTTACTGCCGAATCAGAGACGGTGACGGAGTCAGCAGACCTGTACAACCCCGGACCTCACGACTTCTTGCTCCGCATGCCTGGAGTCAATGTGAAAAACTTCAAGAGCCTTGTAAAACACGCTTCCTGTCTGGCCGATCTTCTAACATTTAGTCAGGAAAAGCTCAGTGAGATCTTGGCCAGTGGTAGCAATGCCAGGCAGCTTTTCGAATTCCTACACAATCCTATGGATGTGGTGCCTGTTCAGAAAAACAAGCAGACATTGTAAAGATGAAAAGTATTGGCGTCGTAATCTCAGGTTTGGTAATTGTTCCTTGTCAAAAGGGATCGGTGTTCATATTTATTAGgaaatgtttgtattaaatgcagtgagtgaattattatatttatgaatatttaaagggataattcacccaaatcTGTCATTTAACTACtaaccttcatgtcattccaaaccttcgTTTATCGTTGGAACACAAATTTCTTGATGAATTctaagagctctctgaccctcccatAAACAGCATAGATCCTAACACAATCAACTGTAATTTCacaaagctatgagaatactttttgtgtacaaagaaaacaaaaataataacattttctaattttTATGGTGCCATTTTTGAAGAGTAACACATACGTAATAAACGCATGCAATGTTATGTATACCACGAATACATTGTTTGCGTATgcgatactctccaaaatggtgctataAAAAGGAGCAAAAGattaattgttgaataaaggggTTTTTTGTGTGCGTATAAAGTATTCTTACGGTTGTCATACCACTGATGTCATATGGATTAATTGAACAAGGttcttactacctttctggaccttgatgTTAGGATCAATGTTGTCTGTGGAAGGGGTCAGAAAGCCCTCGGAAATCATCAGAAGTGTTTTAATTCGTGTTCCAAAAATGAATGCTGGTCCTCGAGCTTAGCaacgacatgaggatgagtaattaacgacagtgttttcctttttgggtgaagtattcctttaaatacCTTGTTTGTTAGAATCTAACTTTGCGGTTTGTAATGAATTGCAACATTGCTGTGTATTGTGGAAATTTAAATGCACttgcttattttaatatttaatattttcatggcCAAATTCCACTCTTAAAAAaattcatgaataaaataaattatttctctaa

Function

symbol description
ercc4 Predicted to enable damaged DNA binding activity; single-stranded DNA binding activity; and single-stranded DNA endodeoxyribonuclease activity. Predicted to be involved in DNA metabolic process. Predicted to act upstream of or within DNA repair. Predicted to be part of nucleotide-excision repair factor 1 complex. Is expressed in liver. Human ortholog(s) of this gene implicated in Fanconi anemia complementation group Q; XFE progeroid syndrome; pancreatic cancer; xeroderma pigmentosum; and xeroderma pigmentosum group F. Orthologous to human ERCC4 (ERCC excision repair 4, endonuclease catalytic subunit).

NR:

description
DNA repair endonuclease XPF

GO:

id name namespace
GO:0000710 meiotic mismatch repair biological_process
GO:0000712 resolution of meiotic recombination intermediates biological_process
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0006296 nucleotide-excision repair, DNA incision, 5'-to lesion biological_process
GO:0000110 nucleotide-excision repair factor 1 complex cellular_component
GO:0000014 single-stranded DNA endodeoxyribonuclease activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function

KEGG:

id description
K10848 ERCC4, XPF; DNA excision repair protein ERCC-4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253547.1 True 4116 mRNA 0.45 11 8325243 8331539

Neighbor

gene id symbol gene type direction distance location
mrtfba LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding downstream 202 8303767 ~ 8325041 (-)
mgrn1a mgrn1a,LOC107734214,LOC107669220,LOC107584113,LOC107554032 coding downstream 47078 8267774 ~ 8278165 (-)
foxj1b foxj1b,LOC107584215,LOC107734171,LOC107669185,LOC107692083,LOC107731389,LOC107554021 coding downstream 58615 8263110 ~ 8266628 (-)
zgc:163057 zgc:163057,LOC107584216,LOC107734190,LOC107692104,LOC107669180,LOC107594186 coding downstream 119523 8203574 ~ 8205720 (-)
hbae5 LOC107734189,LOC107594227,LOC107692106,LOC107674601,LOC107596827 coding downstream 130027 8194223 ~ 8195216 (-)
snx29 snx29,LOC107584181,LOC107734208,LOC107690065 coding upstream 85693 8417232 ~ 8511214 (-)
LOC122355801 LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041 coding upstream 183174 8514713 ~ 8515183 (-)
rsl1d1 rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682 coding upstream 185639 8517178 ~ 8520053 (-)
LOC122355888 NA coding upstream 186696 8518235 ~ 8518365 (-)
LOC122355887 NA coding upstream 187441 8518980 ~ 8519109 (-)
G86576 NA non-coding downstream 34833 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 126119 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 134958 8187641 ~ 8190285 (-)
G86513 NA non-coding downstream 171070 8148747 ~ 8154173 (-)
G86516 NA non-coding downstream 212530 8111193 ~ 8112713 (-)
G86606 NA non-coding upstream 7917 8339456 ~ 8339815 (-)
G86608 NA non-coding upstream 12797 8344336 ~ 8344609 (-)
G86775 NA non-coding upstream 204434 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 265855 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 291758 8623297 ~ 8626329 (-)
G86203 NA other downstream 936333 7388236 ~ 7388910 (-)
G86108 NA other downstream 1221025 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1653996 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 2247175 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 2313132 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 2865 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 179864 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 279013 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 350904 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 355959 8687498 ~ 8687570 (-)

Expression


Co-expression Network