nptx2b (nptx2,nptx2b,LOC107734170,LOC107669183,LOC107594214,LOC108431963)


Basic Information

Item Value
gene id nptx2b
gene name nptx2,nptx2b,LOC107734170,LOC107669183,LOC107594214,LOC108431963
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7892785 ~ 7897664 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253563.1
CGCGAGAAGCGCGGCGTCAGGCGTTCAAGGGCAGGATTTCATACCCGCGGACGATGTTtagtttaagttcatttttgcTATTCAATTAGTATTCCTTTGGCACAAACATGATTGGACCTCTCCGCGCGCCTTTATTACGCAGCTCCAAAATGATCCATCTGCTCGCCGGACTCATATGCATCTACGCACCGACGTGTGTAAAAGTTGTCTACGGACAGAATGAAAAAGGCGAGCGCTTTCTGTGTACTGCGGTCCCCATTGACAAGGAGACAAGTTGCCCCGTGCAGTCCCTGCCTGTTCAAAGCGCATCGGTCCAGGAGGAGGAACTGAGGAACACCGTCATGCAACTTCGCGAGACCATTTTACAGCAGAAGGAGACGATAGTCAATCAGCTGGGAACGATTAAAGAGCTGACGTCTAAACTTTCACGGTGCGAGTCTGACTCCGAAACGTTTAAGAAAACGAATAAGGACACGATGGACGATGTGCCTAAAGATCCAAACGACACCATTGACGTTCTTGGAAAAACGATGCAGAGTCTAAAAGATCGACTGGAAAATTTAGAGcaacagcAAATGCGAGCCAATATCTCTGGTGCCTCGTTTCCTAATGAGCTGAGAAATCTACTGCAGCGTAGACTGGAGGACTTGGAAAATCAGCTGCTCAAGAAGGTCAATGAGCTTGAGGAGGAGAAGTCCCAGCTATATAATGAGACCGTCGCTCATCGGCAGCGCACTGACAGCACTCTCAACTCTCTCATGAACAGGATCTCTGAACTGGAGAAAGGAGGAGCTGGATTTAAATCACCAGAGAATTTCAAGATCTCCCTTCCTCTTCGCACAAATTACCTTTTCGGACAAGTAAAGAAAAGCCTGCCGGAAATGTACGCCTTCACCATCTGCATGTGGCTCAAGTCAGGTTCGAGCCCCGGCATTGGAACCCCGTTTTCCTATGGAGTCCCTGGACAGGCAAACGAGATCGTACTGATCGAATGGGGCCATAACCCTATAGAACTGCTCATCAATGACAAGGTGGCACAGCTTCCTCTATCACTGAGTGATGGGAGGTGGCACCATATCTGCATCACTTGGACAACCAGGGATGGGCTTTGGGAAGCCTACCAGGATGGCCAAAGATTGGGCTCAGGAGAAAATCTGGCCCCCTGGCACCCTATCAAGCAAGGAGGAGTCCTCATCCTGGGCCAAGAGCAGGCCTGTCGTTTATGGCCTCAACAGGATGTAGTAGGGGGGCGCTTTGATGCCACCCAGGCCTTTGTGGGGGAACTGAGCCACTTTAACATCTGGGATCGGGTCCTGCGCTCCACGGATATCATTGCCATGTCAAACTGCTCGTCCTACATGCCTGGGAACGTGGTGGCCTGGACCGACAGTAACATTGAGGTGTTCGGTGGAGCATCAAAGTGGCCGCTGGAGCTATGCGAAGATCGGCTATTCGACAATTAAAGGTGTTTGCGGATATTGGCGATtaactcaccctcaagccatatTAGATGTATATGGAAGTTCTTCTTTGAGCATACAATCAagtttttgtctgaaagaagaacgTTAGGATGGCttaaggatgagtaaataatagggtaaatgtcattttggggggtgaactatccctttaaatcctCGTTATTCTCAAAAAAGATCAATCGCAAATTAGCAAATAGTTATAGAAACATCAGtggtatatttaaatatgctcagatagattacaaaaaagcaggtaaatgtaacatttaagtTGATATATTTGTGGCTAAAGGAAATTTTGCCATTGCAAAACGTATTGTATCAAATGGTACTTCCATGGTACTCTGATAAATACTGTAATCACTGAATGATTATCATAAGTGTATTTGCATTATAATCCATGGTACATTACCATGTCACCACAAAACCACACGTGCGTATGCATATCCTGTTGGAGTACAGCTGCATTCACAGCATGTTGGAATTACCAGAATTATGAGATTTGTAAAAAAGTGCTCATGTCCTCGTAGAATTCATAACTGCAACTTGCAAGCTCCGATTTGTTTCACTTGTCATTTGGAAACACTATAAATGGCAGCAGCTTCAGAAGTAAAATGTAGTTAAACAGTTTTTCCTAAGTACctactgttcatttttttaataatgcaagaataatctgtaaatacaaataatttagcACAGAGTAAGCACTGAATAACTTTCTAATGCCCTACTGAATGAACTATAAGATTATCAATAAGGCATTCGCATTACCTTTTGTATTGTGGTTTTGTCTGTTGATTACTCAAAGTacacaaattaatttcagaGGACATGAACAGATCTAAGCAGGACATCCTGGGTTGTCATctagaaatgtttattacaacATTGCGTAAACTCGAAAACTCAAAAGTATTTAGATAAAAAAGGAGTGTACTTGAATGTGCATTGCTGCCCTTTGGTCTTAGAGAGCCTAATGTaacatgctaatatttcattacaaagcgatttttatttaagaataaGGTTATACATTACATAAGAGgaacatttttgtatgttatgTTGTAAGACATCACACGAATGAGTTTATAACATGGTTAAAGCACCAttaatctttctttttaaatctgtcAGAGATTGttataaatagatatttatttaactcttaTATTACTCTTTTTAGAGTCTAAAGCCCATCCTCTGTTTACACTGACTGAATTACCCATTGAAGATTATAAACGCTTTAACACTgtcagatattttgaagaactgtGTTATGTGAATTATGTTGCATGGTCTGTTTCTTgaaatatattatcatatttttataccctgtttttaaaaatgaagcatttttcaGATATgtagtgttgttttgtttgttatggaATGTCAGGATACCCTAATGTTgtttaaaagcctttttttgtttaccGTGCCAATAATTCAGGGATTGCTTGACACTGCTAACCTGTGATTgccaatgaaaaataaagttcGCTTAGAAGTCTT
>XM_043253564.1
CGCGAGAAGCGCGGCGTCAGGCGTTCAAGGGCAGGATTTCATACCCGCGGACGATGTTtagtttaagttcatttttgcTATTCAATTAGTATTCCTTTGGCACAAACATGATTGGACCTCTCCGCGCGCCTTTATTACGCAGCTCCAAAATGATCCATCTGCTCGCCGGACTCATATGCATCTACGCACCGACGTGTGTAAAAGTTGTCTACGGACAGAATGAAAAAGGCGAGCGCTTTCTGTGTACTGCGGTCCCCATTGACAAGGAGACAAGTTGCCCCGTGCAGTCCCTGCCTGTTCAAAGCGCATCGGTCCAGGAGGAGGAACTGAGGAACACCGTCATGCAACTTCGCGAGACCATTTTACAGCAGAAGGAGACGATAGTCAATCAGCTGGGAACGATTAAAGAGCTGACGTCTAAACTTTCACGGTGCGAGTCTGACTCCGAAACGTTTAAGAAAACGAATAAGGACACGATGGACGATGTGCCTAAAGATCCAAACGACACCATTGACGTTCTTGGAAAAACGATGCAGAGTCTAAAAGATCGACTGGAAAATTTAGAGcaacagcAAATGCGAGCCAATATCTCTGGTGCCTCGTTTCCTAATGAGCTGAGAAATCTACTGCAGCGTAGACTGGAGGACTTGGAAAATCAGCTGCTCAAGAAGGTCAATGAGCTTGAGGAGGAGAAGTCCCAGCTATATAATGAGACCGTCGCTCATCGGCAGCGCACTGACAGCACTCTCAACTCTCTCATGAACAGGATCTCTGAACTGGAGAAAGGAGGAGCTGGATTTAAATCACCAGAGAATTTCAAGATCTCCCTTCCTCTTCGCACAAATTACCTTTTCGGACAAGTAAAGAAAAGCCTGCCGGAAATGTACGCCTTCACCATCTGCATGTGGCTCAAGTCAGGTTCGAGCCCCGGCATTGGAACCCCGTTTTCCTATGGAGTCCCTGGACAGGCAAACGAGATCGTACTGATCGAATGGGGCCATAACCCTATAGAACTGCTCATCAATGACAAGGTGGCACAGCTTCCTCTATCACTGAGTGATGGGAGGTGGCACCATATCTGCATCACTTGGACAACCAGGGATGGGCTTTGGGAAGCCTACCAGGATGGCCAAAGATTGGGCTCAGGAGAAAATCTGGCCCCCTGGCACCCTATCAAGCAAGGAGGAGTCCTCATCCTGGGCCAAGAGCAGGATGTAGTAGGGGGGCGCTTTGATGCCACCCAGGCCTTTGTGGGGGAACTGAGCCACTTTAACATCTGGGATCGGGTCCTGCGCTCCACGGATATCATTGCCATGTCAAACTGCTCGTCCTACATGCCTGGGAACGTGGTGGCCTGGACCGACAGTAACATTGAGGTGTTCGGTGGAGCATCAAAGTGGCCGCTGGAGCTATGCGAAGATCGGCTATTCGACAATTAAAGGTGTTTGCGGATATTGGCGATtaactcaccctcaagccatatTAGATGTATATGGAAGTTCTTCTTTGAGCATACAATCAagtttttgtctgaaagaagaacgTTAGGATGGCttaaggatgagtaaataatagggtaaatgtcattttggggggtgaactatccctttaaatcctCGTTATTCTCAAAAAAGATCAATCGCAAATTAGCAAATAGTTATAGAAACATCAGtggtatatttaaatatgctcagatagattacaaaaaagcaggtaaatgtaacatttaagtTGATATATTTGTGGCTAAAGGAAATTTTGCCATTGCAAAACGTATTGTATCAAATGGTACTTCCATGGTACTCTGATAAATACTGTAATCACTGAATGATTATCATAAGTGTATTTGCATTATAATCCATGGTACATTACCATGTCACCACAAAACCACACGTGCGTATGCATATCCTGTTGGAGTACAGCTGCATTCACAGCATGTTGGAATTACCAGAATTATGAGATTTGTAAAAAAGTGCTCATGTCCTCGTAGAATTCATAACTGCAACTTGCAAGCTCCGATTTGTTTCACTTGTCATTTGGAAACACTATAAATGGCAGCAGCTTCAGAAGTAAAATGTAGTTAAACAGTTTTTCCTAAGTACctactgttcatttttttaataatgcaagaataatctgtaaatacaaataatttagcACAGAGTAAGCACTGAATAACTTTCTAATGCCCTACTGAATGAACTATAAGATTATCAATAAGGCATTCGCATTACCTTTTGTATTGTGGTTTTGTCTGTTGATTACTCAAAGTacacaaattaatttcagaGGACATGAACAGATCTAAGCAGGACATCCTGGGTTGTCATctagaaatgtttattacaacATTGCGTAAACTCGAAAACTCAAAAGTATTTAGATAAAAAAGGAGTGTACTTGAATGTGCATTGCTGCCCTTTGGTCTTAGAGAGCCTAATGTaacatgctaatatttcattacaaagcgatttttatttaagaataaGGTTATACATTACATAAGAGgaacatttttgtatgttatgTTGTAAGACATCACACGAATGAGTTTATAACATGGTTAAAGCACCAttaatctttctttttaaatctgtcAGAGATTGttataaatagatatttatttaactcttaTATTACTCTTTTTAGAGTCTAAAGCCCATCCTCTGTTTACACTGACTGAATTACCCATTGAAGATTATAAACGCTTTAACACTgtcagatattttgaagaactgtGTTATGTGAATTATGTTGCATGGTCTGTTTCTTgaaatatattatcatatttttataccctgtttttaaaaatgaagcatttttcaGATATgtagtgttgttttgtttgttatggaATGTCAGGATACCCTAATGTTgtttaaaagcctttttttgtttaccGTGCCAATAATTCAGGGATTGCTTGACACTGCTAACCTGTGATTgccaatgaaaaataaagttcGCTTAGAAGTCTT

Function

symbol description
nptx2b Acts upstream of or within regulation of circadian rhythm and regulation of neuronal synaptic plasticity. Is expressed in cranial ganglion; habenula; hypothalamus; pineal complex; and retina. Orthologous to human NPTX2 (neuronal pentraxin 2).
nptx2 Predicted to enable carbohydrate binding activity and metal ion binding activity. Involved in regulation of postsynaptic neurotransmitter receptor activity. Is active in glutamatergic synapse.

NR:

description
PREDICTED: neuronal pentraxin-2-like

GO:

id name namespace
GO:0048168 regulation of neuronal synaptic plasticity biological_process
GO:0042752 regulation of circadian rhythm biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253563.1 True 3002 mRNA 0.41 5 7892785 7897664
XM_043253564.1 False 2978 mRNA 0.41 5 7892785 7897664

Neighbor

gene id symbol gene type direction distance location
baiap2l1a LOC107669227,LOC107699869,LOC107724697,LOC107584125 coding downstream 6812 7868994 ~ 7885973 (-)
tecpr1a tecpr1,tecpr1a,LOC107584126,LOC107753445,LOC107594176 coding downstream 24425 7853619 ~ 7868360 (-)
LOC122355671 LOC107669169,LOC107753419,LOC107584230,LOC107699851,LOC107724694,LOC108432015,LOC108273555,LOC105910193 coding downstream 53314 7838092 ~ 7839471 (-)
LOC122355674 pvalb2,LOC103030463,LOC107669167,LOC107753417,LOC107594174,LOC107724690,LOC107584231 coding downstream 55646 7835431 ~ 7837139 (-)
pvalb3 pvalb3,LOC107724689,LOC107669170,LOC107753416,LOC107594172 coding downstream 59633 7831396 ~ 7833152 (-)
tom1l2 tom1l2,LOC107734205,LOC107669200,LOC107584121 coding upstream 159263 8056927 ~ 8069060 (-)
atpaf2 atpaf2,LOC107669201,LOC107584123,LOC107734207,LOC107594216,LOC107699854 coding upstream 171668 8069332 ~ 8071638 (-)
tex2l LOC107584119,LOC107669235,LOC107734227 coding upstream 191817 8089481 ~ 8101898 (-)
bricd5 bricd5,LOC107734175,LOC107731433,LOC107669210,LOC107699874 coding upstream 217726 8115390 ~ 8119810 (-)
LOC122355067 pgp,LOC107584220,LOC107669208,LOC107734160,LOC107731387,LOC107594223,LOC107699876 coding upstream 222670 8120334 ~ 8122090 (-)
G86413 NA non-coding downstream 1564 7890303 ~ 7891221 (-)
G86412 NA non-coding downstream 4539 7887966 ~ 7888246 (-)
G86375 NA non-coding downstream 45953 7846481 ~ 7846832 (-)
G86357 NA non-coding downstream 184591 7707860 ~ 7708194 (-)
G86356 NA non-coding downstream 187302 7705221 ~ 7705483 (-)
G86458 NA non-coding upstream 157104 8054768 ~ 8055031 (-)
G86516 NA non-coding upstream 213529 8111193 ~ 8112713 (-)
G86513 NA non-coding upstream 251083 8148747 ~ 8154173 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding upstream 289977 8187641 ~ 8190285 (-)
G86553 NA non-coding upstream 301254 8198918 ~ 8199124 (-)
G86203 NA other downstream 503875 7388236 ~ 7388910 (-)
G86108 NA other downstream 788567 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1221538 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1814717 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1880674 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 436740 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 613739 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 712888 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 784779 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 789834 8687498 ~ 8687570 (-)

Expression


Co-expression Network