cbx1b (cbx1b,cbx1,LOC107677876,LOC107743766,LOC107566057,LOC107563783)


Basic Information

Item Value
gene id cbx1b
gene name cbx1b,cbx1,LOC107677876,LOC107743766,LOC107566057,LOC107563783
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12701248 ~ 12708174 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253604.1
TCTCCTTTCTAATACGGAAGTGGGCGTGAATAACAGGCACATTCAGCAGCATCACAGCACAGTAGACGTCTGTAATTAATCACTGCAACCCATTCATTTCGGATTTAAATACATGCAGATCAGCTTTATTTCATCTTTATCTCAGCGAGATACAACTTTTAAGAGCCCTTGGAAATATGAGCCAAACGTCAGAGCCTTCAGCCGATGCTGCTGTGACTGAAgCTCCAGTTACTCAATCTGAAACCAAGCAATCAACAGCAgggaagaaacagaacaaaaagaaagtgGAAGAAGTAgtggaggaagaagaagaggagtaTGTTGTAGAGAAGGTCCTGGATCGGCGTGTGGTGAAGGGAAGAGTGGAGTATCTCCTCAAGTGGAAAGGCTTTTCTGACGAGGATAACACCTGGGAACCAGAGGAAAACCTAGACTGTCCTGACCTCATAGCAGAATTCCTTCAGTCACAGAAAACGGCTGAATCTGGAGGCAAGAGGCGGGCCGAGTCAGACGGGGATGGAAAGGAGACCAAAAAGCGCAAGGATGAGCCTGAGAAACTCAGAGGTTTTGCACGTGGTTTGGATCCTGAGAGGATTATTGGTGCTACAGACTCAAGTGGAGAACTCATGTTCCTCATGAAATGgaAAAACTCTGATGAAGCTGATCTAGTACCAGCCAAGGAGGCGAATGTAAAGTGTCCACAAGTGGTCATCTCCTTTTACGAGGAACGTCTCACCTGGCATTCATACCCCActgaagaggaagagaagaaggATGACAAAAActagacgcgcacacacacacacacacacacacacacacacacacaaaaagatgtAAGGGACAGTCAATATCAGTCGTGGCCATTGATATGCttattttgttcttctttttttttttttttaaagacgacaaagaaagacatttgtaaAAAGCAACAGTATAAACCGTAATCTACATAGGTTTCAGCATATTTTAGTTTGGGCACCGTTGCCATAGATGAAGCAGATAGGAAACTGCTGTCTAAGTGTGCTTGACGGGTGACTTTGCACATTTCACGTACTCTTCATGCTTTCTATTGACGGAAACGTTCGGATCGTGTTTTGAAGGAGAATCACAGTCTGATATTCACACGTGTGAAATAGTGTTCTTTACATGTTAGAAATGTTGAACATTTCCCCCCTTCACTGTGTAGATTACAGTGTTTAGTCTCTCATACTGGGTCGGTTTTCTTTGATGCTGTAGCTGTCTCAAAAAATGTCCTGATGTACTCCACGATtcttaattttatgtatatatataactaatgttaaaatattactgcCTTAACAGATTATTAagaaaatgacaattttataCATCTGTCAGTGCAGGTGGTCATTGAACGCATGACTGTATCTAGGCCCGTGGTAAAAGAGAGATGTAAGATAAAGGCCTTATTTGACGTTCGGAACTGGCTTTGATACGATTGGTTTTATAAAGACATGCCAGCAGCTGTTACTCTTCGGTGTTTGTTTGCCCATGACGTGTCTCTTTTCACCATAGGTGCTATTTGTGAGTCAGCCCCATTGGATATTAAGTCTTTCTTGACATGGTCTTGacatttgtgtttgtaaatAGGTTTGCCATTTCCTAGCACATCAGTATCACTGTGTACAGTCCGCTGAAGATTGGTTTTTACTTTGATACTCTTTGTCTTATTACTGTCACACAGCGAAGTAGAAGAACTGTAACATTTGTTCTCCTGTAGTACGTTTTTTTATGTTCTGAGCTTTAACGATTGAATGCTAGTTTTGTTTAACCATgttattattgcatattatcAGAGCATTTGCCAATGAAAtaccattttcaaaaataaaaatctttgttgtaTTTCTGTCAAAACCGgtcataattatttattcttacaCTTTTAAGTAAGGTCAATGGTCAATACTTTTAATCTCGGAAAATTACTTAGACGGggagtctcttttttttgtcaaccgAACTCCTTTGACGTGAAATTAACCCCTCAGATTtgaagttaatattttaatagtgctgtcaaatgatttatcacatctaaaataaaagtttttgtttacatcata
>XM_043253605.1
TACGGGCTCGCGCCCGTAAGTGTTTATTGTGGTAAAATCGCGGCGATCAAACGTGCTGCGGCAAGGATGCAAGATGTTTTGACCACAGCAGACATCGGATAGCGTGCTCGCACTCTCTAAAGCAACATGGAGGAACAAAATACAGTAGAACAGCGGCGCCTTGCTCTATCCATCCCAGCGAGCACAGCACGTGAAGCATGCAATGCATTTATGCAGAATGGGTTTTGTCGCGCGCGCTGGCCTGCCGTCGCAAATGCATAACAGACAGTCCTAGTGTTTGTCATATTATGCATGCAGATGTGTATTACAGCTGCATCCTTTAGCTTTTAAGAGCCCTTGGAAATATGAGCCAAACGTCAGAGCCTTCAGCCGATGCTGCTGTGACTGAAgCTCCAGTTACTCAATCTGAAACCAAGCAATCAACAGCAgggaagaaacagaacaaaaagaaagtgGAAGAAGTAgtggaggaagaagaagaggagtaTGTTGTAGAGAAGGTCCTGGATCGGCGTGTGGTGAAGGGAAGAGTGGAGTATCTCCTCAAGTGGAAAGGCTTTTCTGACGAGGATAACACCTGGGAACCAGAGGAAAACCTAGACTGTCCTGACCTCATAGCAGAATTCCTTCAGTCACAGAAAACGGCTGAATCTGGAGGCAAGAGGCGGGCCGAGTCAGACGGGGATGGAAAGGAGACCAAAAAGCGCAAGGATGAGCCTGAGAAACTCAGAGGTTTTGCACGTGGTTTGGATCCTGAGAGGATTATTGGTGCTACAGACTCAAGTGGAGAACTCATGTTCCTCATGAAATGgaAAAACTCTGATGAAGCTGATCTAGTACCAGCCAAGGAGGCGAATGTAAAGTGTCCACAAGTGGTCATCTCCTTTTACGAGGAACGTCTCACCTGGCATTCATACCCCActgaagaggaagagaagaaggATGACAAAAActagacgcgcacacacacacacacacacacacacacacacacacaaaaagatgtAAGGGACAGTCAATATCAGTCGTGGCCATTGATATGCttattttgttcttctttttttttttttttaaagacgacaaagaaagacatttgtaaAAAGCAACAGTATAAACCGTAATCTACATAGGTTTCAGCATATTTTAGTTTGGGCACCGTTGCCATAGATGAAGCAGATAGGAAACTGCTGTCTAAGTGTGCTTGACGGGTGACTTTGCACATTTCACGTACTCTTCATGCTTTCTATTGACGGAAACGTTCGGATCGTGTTTTGAAGGAGAATCACAGTCTGATATTCACACGTGTGAAATAGTGTTCTTTACATGTTAGAAATGTTGAACATTTCCCCCCTTCACTGTGTAGATTACAGTGTTTAGTCTCTCATACTGGGTCGGTTTTCTTTGATGCTGTAGCTGTCTCAAAAAATGTCCTGATGTACTCCACGATtcttaattttatgtatatatataactaatgttaaaatattactgcCTTAACAGATTATTAagaaaatgacaattttataCATCTGTCAGTGCAGGTGGTCATTGAACGCATGACTGTATCTAGGCCCGTGGTAAAAGAGAGATGTAAGATAAAGGCCTTATTTGACGTTCGGAACTGGCTTTGATACGATTGGTTTTATAAAGACATGCCAGCAGCTGTTACTCTTCGGTGTTTGTTTGCCCATGACGTGTCTCTTTTCACCATAGGTGCTATTTGTGAGTCAGCCCCATTGGATATTAAGTCTTTCTTGACATGGTCTTGacatttgtgtttgtaaatAGGTTTGCCATTTCCTAGCACATCAGTATCACTGTGTACAGTCCGCTGAAGATTGGTTTTTACTTTGATACTCTTTGTCTTATTACTGTCACACAGCGAAGTAGAAGAACTGTAACATTTGTTCTCCTGTAGTACGTTTTTTTATGTTCTGAGCTTTAACGATTGAATGCTAGTTTTGTTTAACCATgttattattgcatattatcAGAGCATTTGCCAATGAAAtaccattttcaaaaataaaaatctttgttgtaTTTCTGTCAAAACCGgtcataattatttattcttacaCTTTTAAGTAAGGTCAATGGTCAATACTTTTAATCTCGGAAAATTACTTAGACGGggagtctcttttttttgtcaaccgAACTCCTTTGACGTGAAATTAACCCCTCAGATTtgaagttaatattttaatagtgctgtcaaatgatttatcacatctaaaataaaagtttttgtttacatcata
>XM_043253607.1
TGGTAGATATTAGGCTGTATTACCAGCATCGCGTAACACCGGTCACATTTCCATCCTCCAGAATATCTAATAACGCAAATCCACGCTTATGATGGAAGAAACCATAGCGATAATCACACCGGAAGTCACCGTTTTGTCTCCTTTCTAATACGGAAGTGGGCGTGAATAACAGGCACATTCAGCAGCATCACAGCACAGTAGACGTCTGTAATTAATCACTGCAACCCATTCATTTCGGATTTAAATACATGCAGATCAGCTTTATTTCATCTTTATCTCAGCGAGATACAACTCCAGTTACTCAATCTGAAACCAAGCAATCAACAGCAgggaagaaacagaacaaaaagaaagtgGAAGAAGTAgtggaggaagaagaagaggagtaTGTTGTAGAGAAGGTCCTGGATCGGCGTGTGGTGAAGGGAAGAGTGGAGTATCTCCTCAAGTGGAAAGGCTTTTCTGACGAGGATAACACCTGGGAACCAGAGGAAAACCTAGACTGTCCTGACCTCATAGCAGAATTCCTTCAGTCACAGAAAACGGCTGAATCTGGAGGCAAGAGGCGGGCCGAGTCAGACGGGGATGGAAAGGAGACCAAAAAGCGCAAGGATGAGCCTGAGAAACTCAGAGGTTTTGCACGTGGTTTGGATCCTGAGAGGATTATTGGTGCTACAGACTCAAGTGGAGAACTCATGTTCCTCATGAAATGgaAAAACTCTGATGAAGCTGATCTAGTACCAGCCAAGGAGGCGAATGTAAAGTGTCCACAAGTGGTCATCTCCTTTTACGAGGAACGTCTCACCTGGCATTCATACCCCActgaagaggaagagaagaaggATGACAAAAActagacgcgcacacacacacacacacacacacacacacacacacaaaaagatgtAAGGGACAGTCAATATCAGTCGTGGCCATTGATATGCttattttgttcttctttttttttttttttaaagacgacaaagaaagacatttgtaaAAAGCAACAGTATAAACCGTAATCTACATAGGTTTCAGCATATTTTAGTTTGGGCACCGTTGCCATAGATGAAGCAGATAGGAAACTGCTGTCTAAGTGTGCTTGACGGGTGACTTTGCACATTTCACGTACTCTTCATGCTTTCTATTGACGGAAACGTTCGGATCGTGTTTTGAAGGAGAATCACAGTCTGATATTCACACGTGTGAAATAGTGTTCTTTACATGTTAGAAATGTTGAACATTTCCCCCCTTCACTGTGTAGATTACAGTGTTTAGTCTCTCATACTGGGTCGGTTTTCTTTGATGCTGTAGCTGTCTCAAAAAATGTCCTGATGTACTCCACGATtcttaattttatgtatatatataactaatgttaaaatattactgcCTTAACAGATTATTAagaaaatgacaattttataCATCTGTCAGTGCAGGTGGTCATTGAACGCATGACTGTATCTAGGCCCGTGGTAAAAGAGAGATGTAAGATAAAGGCCTTATTTGACGTTCGGAACTGGCTTTGATACGATTGGTTTTATAAAGACATGCCAGCAGCTGTTACTCTTCGGTGTTTGTTTGCCCATGACGTGTCTCTTTTCACCATAGGTGCTATTTGTGAGTCAGCCCCATTGGATATTAAGTCTTTCTTGACATGGTCTTGacatttgtgtttgtaaatAGGTTTGCCATTTCCTAGCACATCAGTATCACTGTGTACAGTCCGCTGAAGATTGGTTTTTACTTTGATACTCTTTGTCTTATTACTGTCACACAGCGAAGTAGAAGAACTGTAACATTTGTTCTCCTGTAGTACGTTTTTTTATGTTCTGAGCTTTAACGATTGAATGCTAGTTTTGTTTAACCATgttattattgcatattatcAGAGCATTTGCCAATGAAAtaccattttcaaaaataaaaatctttgttgtaTTTCTGTCAAAACCGgtcataattatttattcttacaCTTTTAAGTAAGGTCAATGGTCAATACTTTTAATCTCGGAAAATTACTTAGACGGggagtctcttttttttgtcaaccgAACTCCTTTGACGTGAAATTAACCCCTCAGATTtgaagttaatattttaatagtgctgtcaaatgatttatcacatctaaaataaaagtttttgtttacatcata

Function

symbol description
cbx1b Predicted to be located in nucleus. Orthologous to human CBX1 (chromobox 1).
cbx1 Enables histone methyltransferase binding activity. Involved in cellular response to DNA damage stimulus. Located in chromosome; nucleus; and spindle. Colocalizes with chromosome, telomeric region. Biomarker of prostate cancer.

NR:

description
chromobox protein homolog 1 isoform X2

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG:

id description
K11585 CBX1, HP1B, SWI6; chromobox protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253604.1 False 2096 mRNA 0.40 6 12701248 12708038
XM_043253605.1 True 2264 mRNA 0.41 6 12701248 12707851
XM_043253607.1 False 2165 mRNA 0.40 5 12701248 12708174

Neighbor

gene id symbol gene type direction distance location
si:ch211-194k22.8 si:ch211-194k22.8,LOC107565757,LOC107754091,LOC107743792,LOC107675005 coding downstream 12000 12685112 ~ 12689248 (-)
mrpl10 mrpl10,LOC107566794,LOC107754119 coding downstream 33269 12666115 ~ 12667979 (-)
osbpl7 osbpl7,LOC107565688,LOC107677882,LOC107743767,LOC107754093 coding downstream 36211 12654000 ~ 12665037 (-)
pdk2a LOC107754097,LOC107565668,LOC107568951,LOC107677886,LOC107743772,LOC103046317,LOC108426453 coding downstream 137209 12556682 ~ 12564039 (-)
LOC122355678 LOC107675002,LOC107754109,LOC107566636 coding downstream 148533 12549656 ~ 12552715 (-)
ccdc189 LOC107566122,LOC107754089,LOC107675027,LOC107743779,LOC107563782,LOC107677867 coding upstream 6077 12714251 ~ 12717184 (-)
znf646 znf646,LOC107754085,LOC107675018,LOC107743758,LOC107677879,LOC107563786,LOC107565918 coding upstream 29645 12737819 ~ 12746643 (-)
cd37 NA coding upstream 44545 12752719 ~ 12758921 (-)
si:ch211-214e3.5 LOC107754079,LOC107565766,LOC107675030,LOC107722448,LOC107689947,LOC107563792 coding upstream 138340 12846514 ~ 12855295 (-)
sh2d4bb LOC107754115,LOC107565991,LOC107675008,LOC107689965,LOC108273974,LOC107722446 coding upstream 171426 12879600 ~ 12886164 (-)
LOC122355629 NA non-coding downstream 62512 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 213853 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 354182 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 548511 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 549613 12151299 ~ 12151635 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding upstream 96522 12804696 ~ 12807646 (-)
G88003 NA non-coding upstream 657779 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 725720 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 750282 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 751971 13460145 ~ 13461245 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 25776 12649383 ~ 12675472 (-)
G87608 NA other downstream 750093 11948540 ~ 11951155 (-)
G87569 NA other downstream 865636 11832879 ~ 11835612 (-)
G87489 NA other downstream 1378645 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 1655359 11042888 ~ 11045889 (-)
G87845 LOC107675011 other upstream 43730 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 716134 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 815494 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 901246 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 1264708 13972882 ~ 13976511 (-)

Expression


Co-expression Network