fra10ac1 (fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956)


Basic Information

Item Value
gene id fra10ac1
gene name fra10ac1,LOC107664625,LOC107654038,LOC107708941,LOC107557362,LOC107743956
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 640871 ~ 650188 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253647.1
TGCAGCACAATGAAAGCAGACATTACGCAAGCGGGAGGACGGAGCGGGGCTACCTTTGTTTTTGACACGTGGTGTACACGTCATCACTCCGCGCCCGCCTGCGACTCCGCGGCATGTAAACACAGATGAGCGGCATGGATAAAACTGCTCTAGACCTCGTTAAGGTCCATGGAGGTGGAGGTTACGACTCAGATttcagtgatgatgatgacggTGGTGGAGGGCAGTCCAAATATGGCGATAATAGGGCAGGTACAGACGAGCTGTTACAGAAGCCGTTCCAGAAAGGAAAACACACCAAGGTGGCCCATAAAAATGTTGCTGCCCATGAATGGGACAGAGAGGAAGCCAGAAACCGACGGCAACATCTGATATCGATGAACGCTTTTGAACGCCACAAGAAATTTGTCAGCGACTACATTCTGTTCTACGGAGGAAAGATCGAGGAGTTCAGACGATCCACGTCTAAAGACAAGACAGACCTGGATGTGGTGAGAGAAAACCACCGTTTCCTGTGGAGagaggaggatgaggacgaCATGACATGGGAGAAAGAGCTTGCAAAGAAATACTACGATAAGCTCTTCAAGGAGTACTGTATTGCTGACCTCAGCAGATACAAAGAAAATAAgTTTGGATTTAGGTGGCGGATTGAAAATGAAGTAATATCTGGAAAAGGCCAGTTCGTTTGCGGAAACAAGCGCTGCGAGAGTAAGGAGGGTCTCAAGAGCTGGGAGGTGAACTTCGCCTATGTGGAGCAGGGGGAGAAGAGGAACGCTCTGGTGAAGCTGCgtCTGTGTCCTGAGTGTTCTTTCAAACTCAACTATCATCACAAGAGAAAGGAAGTAACGGTGAAGAAGAGACGGCGATCAAAAGAGAACGTGGTAAAGTCACTTGCAAAAACATCCAAATCGTCCAGTAAGCTCAAGCGCAAAGACAAACGCAAGCACAAAAAGAGGCGCAAAGAATACTCATCTTCAAGTTCAGAGGAGTCCCAGTGTTCAGATAAAGATGCAGAGAGTggagatgaagaggaagagggtCCTTCAGAATCGGACCACTGGAGAGGTCCAGCACCCACTGTAGAGGAGAAGTCGCGGGAGGAAGAGTTTGATGAGTATTTTGAAGACATGTTTCTCTGAGCCGAGGAGATGAAAATTCAGAAGAATCTCATGcctaatttttttctttttatatatttttttttgagatgttGATTACAATTTGGTgattgttaataatattttgataatgaTCTCTACCGGGCATCATTcaagcaaaaaaatgcatgtgaagAATTTTATACatgtgttcatttgtttataggccttattcataaaacatttgaatattttgtgtgactgagtctgtgtgtgtgtgtgtgtgtgtctgtaaggcacttgcaaaatcattttatatgaatatatgcaaCAACTGCTATAATAGTTTTAAGACTAATTTGTGGAAATATTTGTTCATcttagattttaaatgtttatcagtataagtgtttgtttacttttaacGTGAAGAGATATTTGGCTTCCTGTAAGTACTGCAATATTTTAGGAACTCATAATTACTTAACAAGCTCCTGAGTTTACAGTCAAACCAAATAAATGCTTGTATAATCTGACCCAATAAATGTTGACGGATTGACAGACAGCACGTCTGTCAACGTCCGTTTCTCACATTTGCTCTGATATCACCAATGCA

Function

symbol description
fra10ac1 Predicted to enable phosphatase activity. Predicted to be involved in dephosphorylation. Orthologous to human FRA10AC1 (FRA10A associated CGG repeat 1).

NR:

description
protein FRA10AC1

GO: NA

KEGG:

id description
K13121 FRA10AC1; protein FRA10AC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253647.1 True 1716 mRNA 0.43 14 640871 650188

Neighbor

gene id symbol gene type direction distance location
rbp4 rbp4,LOC107743953,LOC107664626,LOC107598599,LOC107557363,LOC107653948 coding downstream 14349 623911 ~ 626522 (-)
LOC122355758 NA coding downstream 163332 469843 ~ 477539 (-)
LOC122355175 NA coding downstream 196046 439870 ~ 444825 (-)
mapta LOC107598589,LOC107732173,LOC107654024,LOC107664605 coding downstream 206595 407356 ~ 434276 (-)
brsk1a si:ch211-255p10.4,LOC107598587,LOC107732176,LOC108441159,LOC108273514,LOC107654020,LOC107557374,LOC103033508,LOC108427376,LOC107658484,LOC107548343 coding downstream 259704 363606 ~ 381167 (-)
noc3l noc3l,LOC107664623,LOC107654039,LOC107743960 coding upstream 86460 736648 ~ 745103 (-)
tbc1d12b LOC107743959,LOC107654040,LOC107708937,LOC107664632 coding upstream 96079 746267 ~ 762604 (-)
LOC122355750 LOC107654041 coding upstream 128313 778501 ~ 797724 (-)
abi3b abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878 coding upstream 148633 798821 ~ 802802 (-)
itga3b itga3,itga3b,LOC107708875,LOC107664597,LOC107557321 coding upstream 187626 837814 ~ 867877 (-)
G84654 NA non-coding downstream 29024 610067 ~ 611847 (-)
G84547 NA non-coding downstream 162440 478023 ~ 478431 (-)
LOC122355423 NA non-coding downstream 254414 385889 ~ 386457 (-)
LOC122355197 NA non-coding downstream 255849 382572 ~ 385022 (-)
LOC122355220 LOC107561990,LOC107660458 non-coding downstream 442004 197400 ~ 198867 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding upstream 9901 660089 ~ 663746 (-)
G84700 NA non-coding upstream 109737 759925 ~ 789003 (-)
LOC122355303 NA non-coding upstream 116466 766654 ~ 769898 (-)
LOC122355070 NA non-coding upstream 296839 947027 ~ 979785 (-)
G84793 prkg1,prkg1b,LOC107695529,LOC107654050 non-coding upstream 414745 1064933 ~ 1065345 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 88428 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 140652 496964 ~ 500219 (-)
LOC122355759 NA other downstream 150492 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 280389 340273 ~ 360482 (-)
G84521 NA other downstream 319611 319330 ~ 321260 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other upstream 239522 889710 ~ 897517 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 1163895 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1523800 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 2117720 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2439441 3089629 ~ 3103315 (-)

Expression


Co-expression Network