med1 (med1)


Basic Information

Item Value
gene id med1
gene name med1
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5840203 ~ 5863290 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253648.1
CCAAAAACCGAGGAAGAAGATGATGTCATTGCATTCTCGATTAGTGTTCTCCATTGTTGTTCGCAGTTTTCTGCCGGTTTCAGTGCGCTTTGTTCGGTGTTTATTTTGAAGGGGACAGAACTATTTGACCGCGACGGCGCTCTGATGTAACGTTAGTGGTGAGAGCgactttttgttttactgttatcGGGTCAACTCTTGTGGTCGATTTCTGAAAATGGCGGCGGTCCGGAGCAGCAGCCCAGGCGCAGACACATCCCACAGCAGCACTGCCGCGGTCTCCGAACGGCTCCGAGCGGAAGATGGATCTGAGTCAGAGAAACACAGTCGTATGACAGGCTTGCTGGAAAGGCTCCACAGCAAACATAACTCTTCCCGATCCTGGCAGGAGACCTGCAAAGTGGTGCGGCAGGCCATGGAAAAGCGTGGGGTCAATAATACAGCTGGACACCAACTGCTGCTCAACTCTTTAGAGACACTGCAAAGGGCGCTAAAAGTATCTTCGTTGCCATCAATGACTGATCGCCTGGAGTCAATTGCTCGGCAAAACATGTTGGGATCTCACCTGAGCCCCTCACGCACTGAGTGTTACATCACTTCAGATATGTTCTATGTTGAGGTGCATTTGGATAAAGTTGGAAAGCTTGTGGATGTAAAAGTGGCCCACCATGGTGAAAACCCTGTGAGTTGTCCTGAGCTGATACAACATTTAAGgaacAAAAATTTTGATGAGTTTTCAAAACACCTGAAGGGCCTGGTGAATCTTTACAAGCTCCCTGGAGACAACAAATTGAAGACAAAGATGTACCTAGCTCTTCAGTCTCTGGAGTTAGACCTCACCAAGATGATGCATATGTTCAGGATAGCCACTAATGCCAACTCTGTAGAGACAATACTTCACGGCAGTGTGGGACTATTGATGGCGAGGAGCGGTGGTCATCTAGTATCTCTACAGTGTTATGTTTCTCCAAATGACATCTTTGAGGAAGGAACAGGAGCCCAACTGAACTATACTGATGTCAATATTCCCCGTACTTTAGGTGTAAGTGTGTCAGTGACTGTTGAGGGCACCACGTCGGTTTACAAGCTACCCATCGCTCCTCTAATCACAGGATCTCATCCAGTGGATAACAAAGGAACTCCATCCTTTTCTTCTGTAACAAACTCGAACTGTGTAGATTTACCAGCATGTTTCTTCCTGAAGATGAATCGCTTGATGCCATTTTCTTTATCATATATTCAAAAAATGGGCAGTACTACAGgtaTCCCTGTTTTTGAGACGGCACCTACCTTGTTCCCATTATATGATCTCATCATTAAGAGCCAACTGCATGAGGAGGGAGAGGCCAGTCCTCCTTCTTTGGccaaatcaattaatttttatgCATCTTTACCAGGACAGCAGCATTGTTATTTCCTAAATGGTGATGCTCCAGTGCAGGATGGGAGATCTCTTCAAGGAACTTATGTTTCCAAGATTCCTTTCAGACATCCTGCTCAGGTGCCTGCTCTTCTTGACATTATAAGACATCAGGCTGCTTACAACACACTGATTGGTAGCTGCGTCAAAAAAACGTACATTAAGGAAGataCTCCTGGACTGCTACAGTTTGAAGTGTGCCCACTAACTGACTCGAGCTTCAGTGTATCTTTTCAACACCCTGTAAATGAATCACTTGTCTGTGTGGTGATGGAGGTGATTGACTCAAGACAGGTAGCCTGTAAGCTCTACAAGGGTTTATCTGATGCTCTGATCTGCACTGATGACTTCATTACCAAAGTAGTCCAGAGATGCATGTCCATTCCTGTGACTATGCGTGCCATTCGACGTAAAGCAGAGACTATTCAAGCAGATACTCCAGCATTGTCCCTTATAGCTGAAACTGTGGAAATTATGGTGAAGAAAAACTTGCCCCCAACTGGCAGCCCAGGCTACATGGGAATGGGTACAGGGCCAGATGGGAGCAATCCAGTTGGTCTTCCTGGTTTAAATAATGGAACCAACTCTGCAGGAGGCAACAGTGTTGTAGGTGTAGGAGGAAGTGGAACTTTCCAAGGCCCAATTACCTCACTTTTTAACATGGGTCGTACTGGTCAGGGGGGCTCATGTGTGGACACCATAGGACAGGTTGGAGGCCAACAGCAAACAATGCAACATCAACAGACTCAGAGCCATGGTTCAGATGACTTCAGTAAAGTTACTCAGAATCCAATCTTAACTAGCCTTCTGCAAATAACTGGCAGTGTTGGGTCCAGTCCTACTCCCCAGCCACCTCAGCCCCATCAGACCCCCCCACCAACCACCTCTCCAGCAAGCAATACCAAAAACCACCCCATGCTAATGAACCTACTGAAGGATAATCCCTCACAAGATTTTGCTGCACTGTATGGCAGTAGCCCTTTAGAAAGGCAGAACTCATCTGGCTCCCCGAGGACAGATAGTCAAGGGCAGTCTTGCCCTGGCACCAAGGGCaagaaaaagcgtccaagaggcTCTGATAAAGGAGTAATGGGAGCAGGTGGTGGAATGAACATGAAACAATCATCTCAGCAGCAAGTGGGAAGTATGACCCAACAGCATCATCATACACACCATTCTGAAGATGATTTCCACCGAGAGCTTTTCTCCATGGATGTTGACGCCTCCCAGAACCCTATTTTTGATGTTAGTCTTCCAGGTGATGGACTTGACACCCCTCACAGTATCACTCCAGCTCCAAGTCAGTGTGGAACACCACCTTCAGGTCCTGGAATGCCATACCACTCTCAGTGTCATGTCCAACCCCAGACACAAGTCCAGTCTCAGCCACAAGGATCCATACCCCGTATGGTCCGCCTCTCCAGCTCTGACAGTATTGGGCCTGATATCAATGATATTTTGTCTGATATTCCTGATCAGGCCAACAAAGGAAGCAACAGCAGTCATGGCCAGCACCTCATGGCTGGTGAGGAAGGGGGTTCATTGGGAACTCCACTCCGGGATTCTTCCAGCTCAGGTCAAGGTAGTGCTGTTTTTGAGGCAGACTTGTTCAATGCAAACAGCAATGAAAATCCTTTTACTGATGCAGCAGATCTGATTGCAGAAGCTGCTACTGCAGCAACACCCAATAGTGATTCTTCCTCAACTAATTTTTTCCCAGACACAGACTTTAACCCAGAGCTTTTGCCAGGGCAGGGAAGTTTTTCACAGACTTACTTTGAAGATAGCTCCCCCAGCCCTGACCCAGATCTTGAACTGGTTAAAAGTTTTAGTGGGGGAAGTCAGCAGAACACTCCTACAGGCACACCTCAGAATCCTGCCTCACATGGCCAAAATACTCCAGAGGCTTCATTGAAAGACCCTTTTGAAATGGGTATTTTTAGTGGGAATGGTAGTGGAGCAAAGCCAACACTAGGCCCAGCATCAGATATGGCGGACTCGCACCTTCCACATACTGGTGGAGGCCAAAGTCCACTCATGTTGGGCATTGTGGTAGCcagtaatgattttaaaagcagtGACACAAAAGTTAAACCACAGCAGATGAGGGCAAAGGAGGATAATGGGGGAGGAAATTCTGGAATAGGAATGGGGAATGTATGTTCTTCTGAAATTAAGCAGGTAAAGCGCAGCCGTACTCCTTCAAGTGAGGGCAAATCAAAAGATAAACCACCAAAACGTAAGAAGCTAGATCCAGATGGCAAGTCACCTTCACATAGCTCAGGGGGTCGGCCATACACTCCTCCTTGTGGGGGTGCCACTTCTGGAGGATTAGTAAGCGCAGGTGGATCCAAGTCCCCTGGAAGCTCAGGCAGGTCTCAGACACCACCGGGAGGTGCTACTCCACCAATCCCCAAAATTACTATACAAATACCCAGGACTTTAACTGGAGGAAAAACATCGTCTCATGGAGGCTACACAACAAGTAGCTCAGCAAGTGGAGGTACTGGTAATACAAGTGGTACAAGCAGTAGCAAAAGTCACCATTCTCACTCTTCTTTAGGGAAGATAAAAAGTAGTAAACTTGAAGGCTCAGTTGGGCAAGGCAATATCCCCAAATCAAGCATGGCAGGTATTGGAAGTGGTATGTCTTCTCAATCTAAAGGATCCTCCATGGGGATGGGTGTAGGCAAGCCATCCTCTTCTCCCATAACAAAGCACGGTTTGTCAGGCTCAGGCAGTAGTGGCAGCAGtggaacaggaagtggaaaTAAAATTAAGCCCCAAGGTGGTAAACCGCCCGGCTCACTCATGAACCCCAACATCAAGCCCAACATATCACCCTCACACTCTCGCTCTGGAAGTTCTGAAAAACTGTCCTCGCCAATGAAACTTCAACAAGGCCAGGTACCTGGAACTCCACCCTCTTCTAAGGCTAAATCCCCTATTGGCTCAGGCAGTGGAGGTTCAGGAGGGTCCAAGTCTTCAAGTGGTGGAATGGGAACCCAAAAACAGTTAGGCAGTAGCTCATCCACAAGCACTTCATCATCTACTTCCTCTGCAAGCTCCTCTTCATCATCTGGCTCTATACCCTTTTCTTCAAATGGTCAGTCACAATATGGGAGCAGTGGTTGCAGTGGTGGAGGGGGTGGTGGAAGTGGAAACAACCCTAATTCAAAAGGCAAATCCCCAAGCCGAAACAAAAAGCCATCTCTTACTGCAGTCATAGACAAACTGAAGAGTGTGGGTAGTGGGGGAATTAGTGGAGAGGAGGGCGAAGGTTGTGGTGGCAGTTCAGGTGGGGTAGTGCCGCAAAATATTGGTCCTACAACCTCCAAGCACGGTATGTCCTCCCTGGGAGGTGAGTTTCTGAGCAAGAGAGATAAGATGGACAAAGATGGCAAGTCCAAGGTGTCTGGATCAGGGGGAAATTCTGGTGACAAGAAGACTGATTCTAAAAGTAGTGCTGTGACAGGCACTGGTGTGGCAAAAATTATCATCAGCAAGCCAGAAGGGGGTTCTCCAAGCATAAAATCTAAAGTAACTCTTCAGAAACCtggagaaagttctggagatgGTACCATGCGTCCCCAGCACTCGGGTCACAAAGCATCTCCTCTTTTCAGTGGCTCTACACCAAAACATGACCGTAGCTCTCCAAGTCATAGCCGTTCCCCTGGGTACACGCCTATAAATCCAGACAGTGAGAGTGAGTCTGGTAGCAGTTCAATTGCTGAAAAATCTCATCAAAACAGTCCTAGCTCTGAAGATGACCAAACTATGAGACCACACCAACCCATTCAAGACTACATGAATTCCATGTCCATTAGCCAGAgtgaaaaacacaagaaacataaaaaagagaagaaaaagcaaaaagagcgagacagagagcgagacagagaaaaagaaaagaaaaaatcaacAATGTCTTGTGGACCGTCCTCTCACCCAGTAAAGACAGATGGTTGGTCCAGATCCCCTATAGCTTCGGAAACTTCAATGTCAATGCTTAGCTCTGAACGCTCCTCACGACCAAGTcctgtatatatgcatacagAGGATGATGACCTCATGGACTCTGCCTTGACGGGCAATCTAGAACCttttaaataatgaagaaaaaaactaaaaataataataattaatttgtagaggcaaataacagattttttaggctgtagtactttttttaataaaaagtattttataacaATTCTATGTATAAATGTTGCTATTTTTTCACgtggaattattatttttgtctttttccatttttatttggaaaaagacttttttttattgtatgctttatttttgcattttttcaaaTGAGATATTTGAGTGTATATACACTgaaatcacacttaaaaatgttttgagagtTAATATTATCAAACGCATGATAAAatgaaagctttctttttttagtctgtttaactgtatttgaaatgaatgagagaagaatattgttaaaaaaaaaaaaaaaaaaaaaaaaaaaaacaccttttaacCTTGGAAAAtatcagtatattttaaatgttcaattatTTTACATCTTGCTTTTCTATTATCACTTCTATTTGCTACTAGGTGAATATATGTCTTTGTGTAAAATGGATTATGTTTTACAGgactgaataaatgtttttgttttgttttttggggttttttttgggcATCCTACCTATAACTTTGGGCAGTATAACAATGGCACAAGTTTAAGTATTCTAGCTAAGGTATTCACTTTACTATGGttcatatttgtaattattttaaatccttttttattCACTCCATGAAGTGAGTTTACTATAAGTCAAAGTGAGAtggatatttattttggatggtaCATAAGATTAAAGAATAATTTACTTTAGAATTTA

Function

symbol description
med1 Predicted to enable nuclear receptor binding activity and transcription coregulator activity. Predicted to be involved in cellular response to thyroid hormone stimulus and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of mediator complex. Orthologous to human MED1 (mediator complex subunit 1).

NR:

description
mediator of RNA polymerase II transcription subunit 1

GO: NA

KEGG:

id description
K15144 MED1; mediator of RNA polymerase II transcription subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253648.1 True 6306 mRNA 0.44 16 5840203 5863290

Neighbor

gene id symbol gene type direction distance location
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding upstream 74360 5762494 ~ 5765843 (+)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 140297 5691358 ~ 5699906 (+)
si:ch211-217a12.1 si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406 coding upstream 155875 5668900 ~ 5684328 (+)
fkbp10b fkbp9,fkbp10b,LOC107674681 coding upstream 218863 5614079 ~ 5621340 (+)
ppp1r16a ppp1r16a,LOC107716460,LOC107653270,LOC107674642,LOC107727964,LOC107551825 coding upstream 275449 5543755 ~ 5564754 (+)
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding downstream 461203 6324493 ~ 6391831 (+)
LOC122355310 LOC107569775 coding downstream 718298 6581588 ~ 6583943 (+)
plxdc1 plxdc1,LOC107732187,LOC107566549,LOC107694606 coding downstream 936495 6799785 ~ 6961984 (+)
plcd3b plcd3b,LOC107751666,LOC107561636,LOC107662566 coding downstream 1320140 7183430 ~ 7219444 (+)
nmt1b LOC107561637,LOC107662571,LOC107758416 coding downstream 1362572 7225862 ~ 7233649 (+)
G85774 NA non-coding upstream 18516 5821431 ~ 5821687 (+)
G85713 NA non-coding upstream 238022 5601474 ~ 5602181 (+)
G85687 stat5b,LOC107674616,LOC107556764,LOC107727963,LOC102309899 non-coding upstream 343969 5495107 ~ 5496234 (+)
G85685 NA non-coding upstream 347269 5491714 ~ 5492934 (+)
G85683 ghdc,LOC107556765,LOC107727961 non-coding upstream 354454 5483574 ~ 5485749 (+)
G85905 NA non-coding downstream 94604 5957894 ~ 5958234 (+)
G85967 NA non-coding downstream 234838 6098128 ~ 6098334 (+)
G85971 NA non-coding downstream 237872 6101162 ~ 6118513 (+)
LOC122355060 NA non-coding downstream 467047 6330337 ~ 6336029 (+)
G86033 NA non-coding downstream 660670 6523960 ~ 6524390 (+)
LOC122355829 tgfb1i1 other upstream 23888 5766397 ~ 5816315 (+)
drosha drosha,rnasen,LOC107716466,LOC107727962,LOC107556767 other upstream 393484 5426581 ~ 5446719 (+)
LOC122355392 pnmt,LOC107571312,LOC107676565 other upstream 731157 5081165 ~ 5109046 (+)
G85587 NA other upstream 750565 5088925 ~ 5089638 (+)
G85567 NA other upstream 1386928 4452855 ~ 4453275 (+)
becn1 becn1,atg6 other downstream 23662 5886952 ~ 5953486 (+)
G85962 NA other downstream 232658 6095948 ~ 6096732 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other downstream 351629 6214919 ~ 6216567 (+)
G86019 LOC107570179 other downstream 577531 6440821 ~ 6441526 (+)
G86029 NA other downstream 658539 6521829 ~ 6522571 (+)

Expression


Co-expression Network