spata20 (spata20)


Basic Information

Item Value
gene id spata20
gene name spata20
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12113257 ~ 12147867 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253674.1
TATGAGTTTCGGGTCGCTCCACTGACAGTGCATTGCGTGAATCCTCACGTCGAGCAGCTCGGTGCGGATCTATGATGCTGAGACTGGGTCTCGCATGGTCTACATCGTCAACCTCCACCAAACACATCGCACAGGCCAGGCTCTTCACCGGATCCCTTCTGCGAAAACACAGTCCTCATACTTTATGTAACAGCCGGTGCTCTGGACTACCACAAGCCCTCCGGTTTGGCCAGAAGTCAGTGCTTGCCAGTACCAGATCGTCCTGGGACAGATTCAGGTCTTCGGGAACGGTTTTCTTCAGCATGGCATCTGGGAGCGATGGACCGGACACAATAAAGACCCCAAAACACACCAATCGCCTGAGTAAAGAGAAGTCTTCCTACCTATTACAACATGCACACAACCCTGTGGATTGGTATGCTTGGGGACAAGAAGCGTTTGACAAAGCGAAGAGCGAAGACAAGCCTATTTTTCTTTCAGTGGGTTATTCCACCTGTCACTGGTGTCATGTGATGGAGAGGGAATCGTTTGAAGATGAGGAGATTGGAAAAATCCTCAGTGAGAACTTTGTCTGTATAAAGGTGGACAGAGAGGAGAGGCCTGATGTGGACAAAGTTTACATGACATTTGTGCAGgcaACAAGTGGTGGTGGTGGCTGGCCAATGAGTGTTTGGCTCACTCCAGATCTCAGGCCTTTCATAGGTGGCACTTACTTCCCACCCAGAGACAGTGGAAGAAGACCTGGACTGAAAACTGTGCTTTTACGAATTATAGGACAATGGCAGAGCAACAGAGAAACCCTGGAGTCTAGTGGAGAGAGAGTACTGGAAGCCCTCAGGAAGGGGACAGAAATCTCTGCAAGCCCTGGAGAAACTCTTCCATCCGGCCCAGATGTTGCCAGCAGATGTTACCAGCAGCTGGCTCACTCATACGAAGAAGAATATGGAGGTTTTCGAGAGGCTCCGAAGTTCCCTTCACCAGtgAACCTGATGTTCCTGATGTCATTTTGGGCAGTAAATCGTGCCAGCTCTGAGGGAGCAGAAGCGCTGCAAATGACCCTTCACACTCTCCGGATGATGGCATTGGGGGGTATTCATGACCATGTGGCACAGGGCTTTCACAGATACTCCACAGACTCCTCCTGGCATGTTCCTCATTTTGAAAAGATGTTATATGACCAAGGCCAGCTTGCTGTAGCCTATATCACTGCTTATCAGGTGTCTGGGGAACGCCTGTTTGCAGATGTGGCTCGTGACGTGTTGCTTTATGTCTCCAGAGACCTAAGTGACAAGTCTGGCGGCTTCTATAGCGCTGAGGATGCAGATTCCTTTCCTACGGTGGAATCCACTGAGAAGAGAGAGGGAGCGTTTTGTGTGTGGACAGCAGGAGAGATCAGAGAGCTGCTTCCTGACATCGTGGAAGGCGCCGCAGGAGGTGCAACACAGGCGGATGTCTTCATGCATCATTATGGTGTGAAAGAACAAGGCAACGTGGACCCCACTCAGGACCCCCATGGAGAGCTGCAGGGTCAAAATGTGCTGATTGTGCGTTACTCAGTGGAACTCACCGCTGCTCACTTTGGCATCAGTTTGGACAAACTGTCCGAGCTGCTGTCCGATGCCAGGGCCAAGCTGGCCGAGGTGCGAAAAGCACGCCCACCTCCTCACCTGGACACCAAAATGCTAGCTTCTTGGAACGGGCTGATGTTGTCCGGGTTTGCACGTGTCGGAGCCGTGCTGGGCGACAAGGCTCTGCTGGAAAGAGCTGAGAGGGCAGCTTGTTTTCTCCAAGAACACCTGTGGGACGAAGCGGGCCAGAGGATTCTCCATTCCTGTTATCGTGGAAATAATATGGAGGTGGAGCAAGTTGCGTCTCCCATCGCAGGCTTCCTAGACGACTACGCTTTTGTGGTGTGTGGGCTGCTGGACCTGTTCGAGGCCACGCAAAGGGTCCGCTGGCTGCAGTGGGCCGAAGAACTCCAGCTGAAGCAGGATCAGCTCTTCTGGGATTCCCAGGGCAGCGGCTACTTCTGCAGTGACCCCTCGGATCCGACGCTGATGTTAGCTCTCAAACAGGaTCAGGATGGTGCCGAACCCAGTGCAAACTCTGTCTCAGCCATGAACTTGCTGCGTCTCTCACACCTCACAGGCCGGCAGGACTGGATACAGCGCTCGCAGCAATTACTGACTGCCTTCTCTGATAGACTGATTAAGGTTCCAATCGCCTTACCAGATATGGTCCGCAGTGTCATGGCCCAGCATTATACCCTCAAACAGATTGTTATCTGTGGCCAGCCTGATTCTCAGGACACTGCAAGTTTGATTTCCTGTGTCAACTCCCTCTTTCTGCCCCATAAAgtcCTGATGTTGGCAGATGGTAACACAGAGGGTTTCCTCTATCAGAGACTGCCCGTTCTCTCCAGCCTTGTTCCTCAGGACGGCAAAGCAACTGCGTACGCGTGTGAGAACTTCGCCTGTGCCCTCCCAGTCACCTGCCCGCAGGAATTGAGGAGACTGCTGCTGGAGTGAGAGCTGCCGTCACAGCACACAAACATCACTGTGGGATCTCTCCATAGTCGGACCGCTAGATATCTCAGATTATTACGCAAGTAGCAAAACTGCAGTCATCAAAAAACATTCGTAAATGAAATGCACTGGAAGACATTATACAGTGGCAAGGCAAACCTCTAGGGGTTGCCCTAGTTGTGATGTTCTGCCTCATTTTAGACCTATTATACAAGACGGTAGTCTTGGGAGATGGAAATACAATGACATCGTAATGTGAGGGGGAACGCTGAGATTAAACCTTTCATAGGTTTGCCTCATGGGCTCAGTTGATCTTCGTCAACCTGCTTTCTAAACAATCAAGCATGTTTCTCTGCAACCTTTCTATGCAGTGCAGCTGATCAGCCCTGTGTATGCAACATGCTGATGAACACGCTAGATTTAGAGTGGAATGACACATACGATGTATGTATAATAGACTCGGTGGAATATAATAAATACGCACTGAGTAAC

Function

symbol description
spata20 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

NR:

description
spermatogenesis-associated protein 20

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253674.1 True 3017 mRNA 0.51 16 12113257 12147867

Neighbor

gene id symbol gene type direction distance location
etv4 etv4,LOC107552771,LOC107706904 coding upstream 10554 12080097 ~ 12102703 (+)
meox1 meox1,LOC107706874,LOC107669480,LOC107666908,LOC107743797 coding upstream 62254 12045523 ~ 12051003 (+)
sost LOC107552770,LOC107706903,LOC107582741,LOC107743777 coding upstream 119629 11989281 ~ 11993628 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding upstream 131263 11971695 ~ 11981994 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318 coding upstream 159274 11951851 ~ 11953983 (+)
cacna1g cacna1g,LOC107754113,LOC107552774 coding downstream 17722 12165589 ~ 12352484 (+)
LOC122355068 uts2r,LOC107552777,LOC107754100,LOC107689263,LOC107577513,LOC107743796,LOC107691210 coding downstream 224561 12372428 ~ 12402861 (+)
LOC122355615 LOC107754112,LOC107689267,LOC107743783,LOC107566616,LOC107691214,LOC107568947 coding downstream 304127 12451994 ~ 12457855 (+)
cdk5r1b cdk5r1b,cdk5r1,LOC107568950,LOC107565647,LOC107754098,LOC107675021,LOC107691215,LOC108426451 coding downstream 334185 12482052 ~ 12487183 (+)
tbkbp1 tbkbp1,LOC107565677,LOC107754096,LOC107677885,LOC107743771 coding downstream 419214 12567081 ~ 12607101 (+)
G87621 NA non-coding upstream 45628 12067403 ~ 12067629 (+)
G87617 NA non-coding upstream 115745 11997290 ~ 11997512 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 289935 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 309630 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 312630 11800356 ~ 11800627 (+)
G87644 NA non-coding downstream 1556 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 3285 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 9719 12157586 ~ 12157815 (+)
G87665 NA non-coding downstream 10379 12158246 ~ 12158508 (+)
G87669 NA non-coding downstream 91916 12239783 ~ 12240201 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 167622 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 229160 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 411602 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1530712 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1613559 10497425 ~ 10499698 (+)
G87817 NA other downstream 584897 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 612507 12760374 ~ 12762731 (+)
G88016 NA other downstream 1294076 13441943 ~ 13444915 (+)
G88082 NA other downstream 1447927 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 1707828 13855695 ~ 13864743 (+)

Expression


Co-expression Network