LOC122355418 (pnmt,LOC107571312,LOC107676565)


Basic Information

Item Value
gene id LOC122355418
gene name pnmt,LOC107571312,LOC107676565
gene type misc
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6051168 ~ 6078068 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253681.1
ATGGAGAGAGACAAAGAAATACATAGGATAAAGATAGAAAAGTTAAAGACAGTGGCTTCTTTGGAGGCACGTTACCACGGTTTTGATCCTGTAGCTTATCTGCACTATAACTACACTCCACCTCGAGCTGATTTTGAGCGGAAAAGTAGCATTGTGCCATGGAAACTCAGCTGTCTGCACAAAGCCTTTACTGAAGATGATATAAGAGGGGACATTTTAGTTGATGTGGGATCCGGCCCCACTCTCTACCAAGTCATGAGTGGTTGTGAGAGATTTAATCGTGTCATCCTGTCTGACTTTTTGGAAGTGAATCGAAGAGAGCTACGAAACTGGCTACAGGAGGGAAAGAGCAGTATAGACTGGACTGCTTACTTCAAGTACGTTTGTGAACTGGAGGGTCGCAGTTCATCGGCTTGGGCAGAAAAGGCAACACGTCTTCGTTCGGTTGTGTCTGATGTGCTGCCAGTTGATGTACACCAGTCCTTTCCATTATCACCAGAGTTCTTGCCCCCTTCTGGAGCAGACTGTCTGGTGTCATCTTTCTGTCTGGAGAGTGTAAGCCATGACTTGCTTTCCTTCGACCATGCCTTAGGCCACATCTCCAGCCTGCTTAAAAAAGATGGTCACCTCCTGCTTATTGGTGCCTTGGGAGAGAGCTTCTACATGGGGGCACCAGGGCTATACATCCCTGTGGTCCCTCTGGATGAGTCTCAGGTCTGTGCTAGCCTGAAGGCCAGTGGATATCAGCTGTTGCAGTTGTGCATTTACCACCTGCCCCCAGACATGAAGCTGGGAGTGGATGATGTCACTGGTGTGTTCTTTGTAAAAGCTAAGAAAACATGAACAATTGTAGTTGAAGAGTAGTTCATGGACTGTAAAGTTAGGCCATGTATGACTGTCTTATGTCTTAATTCTTCACTTTTAATTGAACATGAAAAATTACGACGAAttctaaacaaaacaattgttCCCAATGTTTGATTTTACTCATTGCAATTATCACAATTATTAAATCACCCCACATTCATTGCAGTTAATATTGTCTGTCTCTTAAGCAGCATATGTGACAGTCTATTAGTATCTAAATTACACAA
>XR_006252215.1
GGCTACAGGAGGGAAAGAGCAGTATAGACTGGACTGCTTACTTCAAGTACGTTTGTGAACTGGAGGGTCGCAGatgtgaggATAAGTGCAAAAGAACCTGTTGCAAAGGGAGCCAATGCAAATAAACAGCCTACTCAGGATCCTGGAACACAGCTTGACGAAATGAGGCATTTTTCCGCCATGAGTCTCTTCAAAACGTCTTTCAGAGCACATAAACAATATACACATTGGAAATGCCAGGTATGTGATgctcatttatatatttcaacacgacacactaccagtcaaagtttttgaacagcaagatttttaatgtttcaagcctgcatttatttggtccaaaatacataatgtattttCTAGTAATATTAGAAGTCTTTCTTCGTCTTTCTT
>XR_006252216.1
taataaatgtacatgccCTGTcatgtgaaaatgtaaacaggTTTGCAAAAAAGTCAATTGCAAATAAAGAGAAGTAATGGGAATGTGGTGTTTCtatgttctgtttttatgtGAGCAATAGACATTAAtaagttctttaaaaaacataaatgaccACGGAAACATAGCCAGTCATGCTCTACATTAAACTATGATTcactgtctgtcagtcactacaagttatgttgtgacgacaaactggggtcttgcttggaactcttattagctctgattaagagaaaagtggttaactaatcctgaggcACTCCCCATCACACGGGTATAAATAGAAGACAGGTGTAACCACTTGTCAAATTTTGCTTCGGAGTGCTGCATGTTGACTGTACTGGCAATTTCTTTTGAAGAGAGCGCTGGAAAAGAAGCTGTTCTTGTGGTGTTCATCGGCTTGGGCAGAAAAGGCAACACGTCTTCGTTCGGTTGTGTCTGATGTGCTGCCAGTTGATGTACACCAGTCCTTTCCATTATCACCAGAGTTCTTGCCCCCTTCTGGAGCAGACTGTCTGGTGTCATC

Function

symbol description
pnmt Predicted to enable phenylethanolamine N-methyltransferase activity. Predicted to be involved in catecholamine biosynthetic process. Predicted to be active in cytosol. Implicated in Alzheimer's disease; hypertension; and multiple sclerosis.

NR:

description
PREDICTED: phenylethanolamine N-methyltransferase

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function

KEGG:

id description
K00553 PNMT; phenylethanolamine N-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253681.1 True 1094 mRNA 0.44 3 6051168 6078068
XR_006252215.1 False 393 transcript 0.39 2 6064298 6073432
XR_006252216.1 False 571 transcript 0.41 2 6051723 6054353

Neighbor

gene id symbol gene type direction distance location
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding downstream 29012 6017991 ~ 6022156 (-)
mylpfb mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412 coding downstream 172947 5875085 ~ 5878221 (-)
pkmyt1 pkmyt1 coding downstream 288557 5748277 ~ 5762611 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding downstream 304638 5736592 ~ 5746530 (-)
avl9 avl9 coding downstream 317880 5703313 ~ 5733288 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding upstream 119414 6197482 ~ 6280348 (-)
hexim1 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 coding upstream 1093328 7171396 ~ 7173368 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding upstream 1096550 7174618 ~ 7182834 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding upstream 1281315 7359383 ~ 7365015 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding upstream 1426648 7504716 ~ 7521406 (-)
G85939 NA non-coding downstream 518 6050200 ~ 6050650 (-)
G85935 NA non-coding downstream 17399 6033481 ~ 6033769 (-)
G85934 NA non-coding downstream 21144 6029733 ~ 6030024 (-)
G85929 NA non-coding downstream 62829 5987861 ~ 5988339 (-)
LOC122355182 NA non-coding downstream 70096 5972473 ~ 5981072 (-)
G85966 NA non-coding upstream 18992 6097060 ~ 6097867 (-)
G86017 NA non-coding upstream 360832 6438900 ~ 6439334 (-)
G86020 LOC107570179 non-coding upstream 362749 6440817 ~ 6441521 (-)
G86024 NA non-coding upstream 364750 6442818 ~ 6443073 (-)
G86026 NA non-coding upstream 365260 6443328 ~ 6443697 (-)
G85930 LOC107711793,LOC107755027 other downstream 39057 5990913 ~ 6012111 (-)
G85925 NA other downstream 63388 5984989 ~ 5987780 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 624657 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 654256 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1634271 4412573 ~ 4416897 (-)
G86049 LOC101886504,LOC101886427 other upstream 592251 6670319 ~ 6671247 (-)
G86108 NA other upstream 1025812 7103880 ~ 7104218 (-)
G86203 NA other upstream 1310168 7388236 ~ 7388910 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 2256336 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 2433335 8511403 ~ 8513265 (-)

Expression


Co-expression Network