cdc42ep1a (LOC107584101,LOC107690062,LOC107734237,LOC107692066,LOC107554048,LOC107731423)


Basic Information

Item Value
gene id cdc42ep1a
gene name LOC107584101,LOC107690062,LOC107734237,LOC107692066,LOC107554048,LOC107731423
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8583518 ~ 8592029 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253683.1
CCCCAGACCAGACCAAACGCGTTTCACTGACACGGAGCTTCACACTGACCGCTGCCTCTCAAACGGGAGACCGTACAAAAGAGAAAAGTTTGATGGTGGACTGCGGGATCCTAACATACGTGGAGATAAATCCCATTCATCGCTTTCTGGGGCGTGATACGCTTCTATTCATCAACCCACGAGGACCTTTGTTGATTTTACAAGAACCCTTTCAATCTGGGACGCCTGAGTGGAATAAACCAGCAGAGGGGGATTCCGGGTGAAGAAGGAGAAGAGGGATTAGGGGCTTATCCTGGACATGAACAATCCTTAAGGAGCCTCCGTCTAGCTGTACTATTGCCCAGATTATTACATTTAAGTTATTGCCTTTTAAAGACCCTTTATCTTTCCCGGGGGATTCCTGGCGAGCGGGCCGCTGGATTTGAGTATCTTTAAAATCAGAGGATCAGGAGCAGAAGCCGGTGGGAGTGGAGGAGCATGAGAAGATACAAGCAGGGATAAAGCAACAAGCCTCCCTGTCACCTTACACTTCAGCAGGGTGCAGGTCAAGGGTCACTGAATGAACTTGGATTGGGAAAGAATGCGATCACATTGATTACACAAATTTGATTAAGAGCATGTAGCAGCAGACTCTCTGGACCTTACTAAAGAAGGAGCACATGGTTTCAGTCCTAAACCACAAAGATATCTGCAGCCCGAGCTGAATTTATTTCtgagctgattttttttcagaagcacAAACCCAGAACAACTGTGAAGCCCAGAATCTTTGACCGCATATGCAGCAGAGGTTTTCAGGAATTGGAGTCATGCATATTTTCAGCTCGCATTTATCTTCACAGAATCTTTCTGGATATGAACAAAGACCTATGGCCAAAATGGGACATAGCTGAATGCTTCTGCCTTTTGAGAAACTTCTTAGCAAAAGAAACTTTCCACTCAACTGCAGTTGTCATTTTGCCGGGATATTTTAAAGCTGGAAGGTTGATACGTGTATAGTTAGCTTTTTTACAGTCTtctcacaattttttaaaacaatttttgtgGATATTTTCTTACTGACTCTGGAAATTTGCAGTCCGTACCCAGAGAAGCCATGAACTTGGGCAAGCTCGCTGGCCTGAAGGGCCTGGTTTCCCACTCCTCAGGAAAGCGCAAATTTAAAGGTGACCTCACCCCAGACATGATCAGCCCTCCATTGGGTGACTTCCGCCACACCATGCATGTGGGCCGTGGAGGGGACGTGTTTGGGGACACCTCGTTCCTCAGCAACCATGGTGGAGCAGGAAATAACGCAGATGGAGACTCCTCCTCCACTTCAGAGAAGAATGAGGGATTCTTCTCCCGCACGCTTCGCCATGTCCGCAAGACCCCCGACAGGCCCCGTGGCGGTTCCAAGGATCTTTCGCCTCCACCTCCACCCATTTCTCCAATCATTAAGAATGCCATTTCCCTCCCCCGGCTGGACGTGGACTCACCCAACGGCTGTCCTGTGAAAGTGCTTTTCCCTAGTCCACCCAAAACACCAGACAACTCCACTTACCTCTATGGTTTGGAGTCTGGCTTTGTAACCTTGCCGAGACTGTCCCGCACTGAGCGTCCAGCCCAGGGCAGTTCTTCCTCAGCCTGCCCGCCTGAAATCCACAGAGGCTCTCTCACAGACACTGGTATCCCGTCCTTCCCCTGCTCAGACTCCATCAGTCCCTCTGACTCCATGAACTCCTTCACACTTGATCTGGGCCCTTCCCtcatgtctgaagtctttgcCATGATTGACAGCCCTGTGTGTGAAAAGGCCGATCCCATCAGTGAAAAAACACAGTCCACCGATGATAACTCCGAAGTGGACTCGGACGCAACCACGTCCTTGGTGGACTCTCTCCTGAGAGAAGACGACGACGGTAGGACACGCTTGTATGGAGGAGAGTGGAAGCATTCAGACTTTGTAAATGGTGAGTCACCCAAAAAACCCATGCTGGGGGACCGGATGCGCTCCTTCTCCATTGAGGATCACGGCATGGAGCCGGAACGTTTCCAGAGGGCTGCTGATGTGCTGGCACGTCACTACGGGAGTGGAGGACTCAGGAATACAAACACCAACAACTCTCATAGGAGAGGACCATACAGCTATcctgatgaagaagaagaaatcaaAGTCTAACACTATGAGATGCCTCAGGTCTAAATCGCAGAGCAcatttaaatggatagttcagccaaaaacgTCTTAATTTCTTCagcctcatgttgttccaaacctgattCTTTCCTTTGTGATATAATTAAAAGTAGTTTCAAAGAATgccactttttcattttaatgtaattgaatGAGGACTGGGCCTATTAAGCTCCATAACTTTAAAAACACCAAGAAAGTATCATAGATGCAGTTCAGAGTTTTCTGAAAGCATTTTAGAGTACAGTGAGGATCAAACCAAAATTCCAAGAAGTTATTATTGAAGTGATTATGTTCTTTTCTTCTGGGCTGTGAACTGAATTACCGAGTCAttcgagcagcaaatcagttCTGGTTCAATTTCGAACGAATCATCCAGACTGGTTTTCTGTATTGGATAAGCATAATGATAATAAAGATAATGGTGAcaattttttcagaaatatgacATTATAACTACTAGAACAGATgtcaatgaaaaacaaaaataaataataatgtaaatggaTGTtccatctaaaaataaaaaacaattgtaaatTCACCCGCATGTCAATCCAAAAACTGACTTTCGTTCTTCTGTAGAACACTAGAAGATCATTTCATGTAAAAAGTACAACATACAGTAAAAGTCAGTGGAGTTCAAATTGTTGTTTGGTTTCTAATGTTCATCAAAATCCCTTAGTCCTGCAGAAGACAGAAATGCTTGGAGAGTTGAGAATGACATGATGGGTAGAGTGTCCCTTGaaaagcaattaaataataaattagaaatgtaacGTCATAATGAAATCTGCTCTGTTTCTCACAGAAAGCTATTGCATGATTCCAGAGGACTACCTACAACCCTCAAGTCAATTGGATCGCTTTTATAAaacttttggtgcttttttttattaaagtttttgaaaTGGCAGCCCAGGttcttattaaaattaatttcatgaaAAAAGCACCAACATTAAACGTCTAAAATGTTTGTTACACAAAGGAGGCTCataatgacatgagagtgatgactgaattataatttttggatgaactattcctttaaaactatTTCTAAATTTTGCAATGGGGAAAATGAAGGTGAATTAACTATTATTTACGCCTATGCCGATGGTGTTTTATAGAAAGtattacaaacaaaaagaattaCCTGCCATATGAGTGAATCtacattttgcaaatattaagCAAGAACATTCTCTAGTATTGGCATCTTGAATTTTCTCCTATGTTTGATCCTACCATCTCATCCTTACCCAAACATTAGCTTTTATCCAGGGAAATAAAACCTGCCACGGTTGCTCTGTAATGCACAGTAAACACAGCTAGCTATACAATGGTAACAATATGccattaaaatatgcaatattttagtttacaatatttagatttcaAGTAAACCTATGCAATGTACAGTGGTGATACCATGTAAAATACAGACATATACCTGCTAGCAATCTTGTATCTACTACTCAAAACActttacattttgcattcatGTAGTTTTAATAGCTCATTGTTGCAGTAGAATTATTTTCTGAGAAACCGGCGAACAAGAAATATTGGTCACTGCGATGCACGAAACTGTGATGTGCTTTATGTTTTCACATCAGTACAAAACAACAGCAGCCATACTGTCAtttatcttttctttattaCATGATAAATACCTTAAGATCAACACAgtatacagtaatattatatGATGTCCACCAGCTTTTATCAATGTATTATGGaattatgattaaatattaatatgaattttatttgaatttgtttcTGACAGAGGAGTTGACCTCTCCGTTCCCTTAATCACAATATAATATGTACATACTGTACGTATGTGCGGCTTTGCACAAGAAAGTTGCAAAATAGCAATGTATGTTACCtgcaatgttttcattaaaataagctATGAACAACA

Function

NR:

description
PREDICTED: cdc42 effector protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253683.1 True 4112 mRNA 0.41 4 8583518 8592029

Neighbor

gene id symbol gene type direction distance location
si:ch211-141o9.10 si:ch211-141o9.10,LOC107690061,LOC107584211,LOC107734185,LOC107584178,LOC108431982,LOC107089545 coding upstream 10119 8568778 ~ 8573399 (+)
maff maff,LOC107690056,LOC107584105,LOC107692071,LOC107554043,LOC107731405,LOC107734233 coding upstream 42347 8535986 ~ 8541171 (+)
shisa9a shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107692077,LOC107731434 coding upstream 195190 8361185 ~ 8388328 (+)
LOC122355370 NA coding upstream 279977 8292736 ~ 8303541 (+)
ubald1a ubald1a,ubald1,LOC107734217,LOC107669224,LOC107731421,LOC107554033 coding upstream 294749 8279068 ~ 8288769 (+)
zc3h7bb LOC107690064,LOC107692064,LOC107734154,LOC107554050 coding downstream 21310 8613339 ~ 8626327 (+)
tefa LOC107584098,LOC107734194,LOC107663181 coding downstream 36598 8628627 ~ 8634070 (+)
aco2 aco2,LOC107734200,LOC107584097,LOC107731401,LOC107554054,LOC107692062,LOC108273913 coding downstream 48621 8640650 ~ 8649914 (+)
csdc2a csdc2a,csdc2,LOC107584207,LOC107731402,LOC107554055,LOC105919973 coding downstream 58302 8650331 ~ 8652780 (+)
gucy2cb si:ch73-139e5.4,LOC107734164,LOC107584206,LOC107663179 coding downstream 61972 8654001 ~ 8668389 (+)
G86593 NA non-coding upstream 238550 8344669 ~ 8344968 (+)
G86577 NA non-coding upstream 291456 8291843 ~ 8292062 (+)
LOC122355856 NA non-coding upstream 376770 8204145 ~ 8206748 (+)
G86536 NA non-coding upstream 379375 8203583 ~ 8204143 (+)
G86540 NA non-coding upstream 385108 8198094 ~ 8198410 (+)
G86713 LOC107578697 non-coding downstream 90360 8682389 ~ 8686117 (+)
G86756 NA non-coding downstream 281298 8873327 ~ 8873545 (+)
G86758 NA non-coding downstream 283086 8875115 ~ 8875455 (+)
G86943 NA non-coding downstream 889556 9481585 ~ 9487179 (+)
G86959 LOC107657285,LOC107733473,LOC107738963,LOC107665891 non-coding downstream 1004264 9596293 ~ 9600682 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other upstream 385614 8195964 ~ 8197904 (+)
msrb1b msrb1b,LOC100705913 other upstream 476738 8105148 ~ 8106780 (+)
LOC122355675 NA other upstream 739435 7815823 ~ 7844083 (+)
G86143 NA other upstream 1275289 7307924 ~ 7308229 (+)
G86142 NA other upstream 1278670 7303138 ~ 7304848 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 244419 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 693634 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1064640 9656669 ~ 9664139 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other downstream 1165218 9757247 ~ 9767228 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other downstream 1272785 9864814 ~ 9874515 (+)

Expression


Co-expression Network