pelo (pelo,LOC107653258,LOC107674509)


Basic Information

Item Value
gene id pelo
gene name pelo,LOC107653258,LOC107674509
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5360364 ~ 5367143 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253686.1
CTAATGACGCGATCAGAAAGCGACAGTTCGAATCGTCTGATTCATTCTAAAGTGGCAGAATGTGCCACTGCTGATGCGGAAAcgtcatcaaaattaaattgaatagtacacaattaaatatgcattttgtttttgaatagcTAAGCCCTTTGACCATGAAGTTGGTTCATAAAGACATCGAGAAGGATAATGCCGGtcAGGTGACACTAATACCTGATGAAGCAGAGGATATGTGGCACACCTACAACCTACTGCAGGTGGGCGACAGCCTTAGAGCCTCAACCATCagGAAAGTGCAGACAGAGTCCTCTACAGGCAGTGTGGGCAGCTCACGTGTGCGCACCACACTGACTTTATGCGTGGAGACGATAGACTTCGATTCCCAGGCATGTCAGCTCAGAGTCAAAGGGACAAATATCCAGGAGAACCAGTATGTGAAGATGGGTGCCTATCATACCATTGAACTGGAGCTCAACAGGAAGTTCACTCTTGCCAAAAAAGTCTGGGACAGCGTGGTGTTGGACAGAATTGAGCAGGCATGTGACCCCGCTCAGAAAGCAGATGTGGCTGCTGTTGTGATGCAGGAAGGTCTGGCCAATCTAGTTCTCGTGACTCCAGCCATGACCTTGCTAAGGGCAAAGGTTGAGGTCACCATCCCCCGTAAGAGAAAAGGCAGTTGCACTCAACATGACAAGGCATTAGAGAGATTTTATGAGGCTGTCATGCAGGGCATTCTTAGGCACTTCAATTTTGATGtggtGAAATGTATACTGGTGGCCAGTCCTGGATTTGTGAAAGATCAGTTTATCTCGTACCTGTTTAAAGAGGCTGTGAGGCAAGACTGTAAAATACTACTGGAGAACAGGCCCAAATTCATGGTGGTGCACTCCTCATCTGGACACAAGTATTCACTCAAAGAAGTGCTGTGTGATCCAGCAGTCACGGCCCGGTTGTCTGACACCAAGgcAGCTGGAGAGGTTAAGGCTTTGGAAGACTTTTACAAGATGCTTCAACAGGAGCCTGATCGAGCTTTCTATGGACTGGCTCATGTGGAAAGAGCGAGTGAAGCTTTAGCCGTTGACATCCTGCTCATCAGTGACAAACTATTTagACATCAAGACATAGCCACTCGTAGCCGATATGTTCGGCTTGTGGACAACGTGAAGGAAAATGGAGGAAATGTCAGaatattCTCAAGCCTTCACGTATCTGGAGAACAGCTGAATCAGTTGAGTGGAGTGGCGGCCATCTTGAGGTTCCCCATTGCTGACATGTCTGAAGCTGAGGACGACAGCAGCACTGATGAAGACTAACGTTAAGCAGTCATGCAAAAGGATTTGGTATGAAAGACCAGAAATTCTTCAGTTAGGACTACATGGAATGAGACTCTATGGCCTTTAATAAAGGATTTGAAATCAGTTGAAACATCATAAAACACTGggataattatgatttattatctTCAGAGCTCTGAAGAATGGCAAAAAGTATTGAAAGTCATTACTTTATTAATCCCGTATGCAAAGTGGGTTTTCTGCGTTCattgaaacaacatttatttgtaaataattgcaaattaatttagAGTTTTAAGGCATTACAGAGCTGTGGATGATTTGCATGGATTTGGACACAGGTACTTAAACTGCAACGCATCCTTGCAATGCACCCTTTTCAGAGAAGAGCAtttgcaaatgaaaaacaaaccaaattaAGGAAGAAAATGTGCAGGTTTCTATAACAAACACTCCCCCCAACGAGCCAGGTTTGAAAACTGTGaaagttcaaatgtttttctaaaacaCCCATTTGTTCCAATTTTTGAAATTCATTGTCAGAGTAGATTGGAGCGTATTTAGAAATTGCTATGCATATTTAACCAATCATCAGCGTCACAGTTTGTTACACAAAAAATAGTTACAGGTGCAAAACATAAACACTTATGCTATGAAATCTATTTACAATATCACACACATTTTAGTCTCCAGTAGCAATACAAATATAAGTTACCTAGCCATGCAGGAGCAGCTTCCAGACAATATGTATCTTAgatttaaagtagctgttttgtTGACAGTGAACCATGTTTTATAGTGTATTCCGGTCATTTAGAAaagattgttttttaaaaaaaaaaattttaatgcaCGTAAATGGCACCACAAAGCCCAGCGTTTTCAAGTTGGGGGGCATGTTggtaaaaaatacaatagatGCAGAATCTATATTAACTAGTTATTTCATTTACGAAAAAAATAGCAAAGGTGCATGTACAAAATATGATTGTACTGTGCAATTAcaatagaatatataatattcagtttacagcaatttataatttaacaaaaccataaagcaaaaatacacCCGACGTGCATTCCGCAGTCAGCATTTTGTAGaagtagatttaaaaaaaaaaaaaaatcttgtgtaaatatttttttgttttaagtagaTAAGGTTTATTGCTATATTAAACTGACCGAAGTGGAGTGTTTTCACTTGACATCGGAATTGCAACTTTGCCAGTTCCTTAATATCAACTTCCCAGGAGGACACACACATCATTACACATCACTGTCACGGCAGTAGCTCTGATCACAAATGTTGAAATGACATCTCCCtcaaaagaatatatttgtataatctATACACGTAGTTGCTTTTTCACTACAGGAGCATGCTATAACAGTACAGACAGAGGACACAGAACATACTTTCTAGTGGCCATGTGTCAACAGTGGTTTAGGAGTATACTTTTTAAAAGGCTGTGCATTTGGCTGTactttaacatttgtatttaactATACTTAAACTAGGCTTAAAGTGAATACTACATTAAGTCATTTCTAATAACATCCATAAATTAACACTAAACCTCAAATTAAATCTGAATTCAGTCATGTTtactaaacataaaatatttgtgtaccTCTCACTCAGATTAAAATCTTGGTCTGACAGACGTCTCTTCTTTTTAGGAATGTGTAAGTAGTCATTTGtgcttctttaaaaatgactgcGTATGTTGATATGTTATGATTATagctcatttttcattttatgcacATGCCAGGACGGTAAATTTGAATGTCAGCCTCCTGTAAAACTGTCACCACTGTGAATCGAAGATGTGTCTGGGTAGCCAAATGGTTAAAGGAGCACTTACTCCAATCTCTAGATATAGCTCGGGGacaactttttgttttaataattttacaaaattttattttcgtttttttttcaatgtgttGTCAGATTTGACAgtgttgaaaatgttaaatatcaaTGCATACTCTTAAATGGAAACTGATTTCTCCAATTGTGCTTTGATAGTATAACAACAAGTCCAGCTTGTTTAATTCAAGTAATATTTTATGCTCATATACAATTCATATTTGACATATGTAGCACCAtgtaaataaagcacatttgttAACAGTA

Function

symbol description
pelo Predicted to enable endonuclease activity and metal ion binding activity. Predicted to be involved in nonfunctional rRNA decay; nuclear-transcribed mRNA catabolic process, no-go decay; and ribosome disassembly. Predicted to act upstream of or within RNA surveillance; cell division; and nuclear-transcribed mRNA catabolic process, non-stop decay. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human PELO (pelota mRNA surveillance and ribosome rescue factor).

NR:

description
protein pelota homolog

GO:

id name namespace
GO:0007049 cell cycle biological_process
GO:0051301 cell division biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K06965 PELO, DOM34, pelA; protein pelota

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253686.1 True 3444 mRNA 0.38 13 5360364 5367143

Neighbor

gene id symbol gene type direction distance location
ccser2b LOC107716476,LOC107653247,LOC107727960,LOC107569472,LOC107674460 coding downstream 30131 5280381 ~ 5330233 (-)
LOC122355389 grid1b,grid1,LOC106578986,LOC106589364 coding downstream 305249 4929813 ~ 5055115 (-)
LOC122355129 LOC107560557,LOC107753319,LOC107735415,LOC107694068 coding downstream 1123135 4232549 ~ 4237229 (-)
dnajc9 dnajc9,LOC107694081,LOC107684784,LOC107751706,LOC107753312 coding downstream 1189442 4167639 ~ 4170922 (-)
p4ha1a p4ha1a,LOC107684765,LOC107753313,LOC107751705,LOC107560551 coding downstream 1206489 4139060 ~ 4153875 (-)
emc9 emc9,LOC107716469,LOC107551848,LOC107674563,LOC107727956,LOC107653261 coding upstream 48756 5415899 ~ 5419866 (-)
ghdc ghdc,LOC107556765,LOC107727961,LOC107716443,LOC107577004 coding upstream 110379 5477522 ~ 5486280 (-)
stat5b stat5b,LOC107716464,LOC107674616,LOC107653267,LOC107556764,LOC107727963,LOC107551841 coding upstream 120657 5487800 ~ 5504829 (-)
foxh1 LOC107716461,LOC107551840,LOC107556762,LOC107727966,LOC107653269 coding upstream 168030 5535173 ~ 5540436 (-)
adam11 adam11,LOC107716458,LOC107653271,LOC107727973,LOC107674663,LOC107551824 coding upstream 197465 5564608 ~ 5600663 (-)
G85572 NA non-coding downstream 907088 4452755 ~ 4453276 (-)
G85569 NA non-coding downstream 948164 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 1047316 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 1048460 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 1075429 4275337 ~ 4284935 (-)
G85868 NA non-coding upstream 360161 5727304 ~ 5731090 (-)
G85889 tgfb1i1 non-coding upstream 443514 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 453206 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 470229 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 471416 5838559 ~ 5838957 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 943467 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 963871 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 967209 4393074 ~ 4393155 (-)
trnal-uag_70 NA other downstream 968528 4391754 ~ 4391836 (-)
trnal-aag_71 NA other downstream 970677 4389600 ~ 4389687 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other upstream 55941 5423084 ~ 5426511 (-)
G85925 NA other upstream 617846 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 623770 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 684025 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 1303176 6670319 ~ 6671247 (-)

Expression


Co-expression Network