pigf (pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117)


Basic Information

Item Value
gene id pigf
gene name pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11006964 ~ 11013659 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253696.1
GCTTTGTTTAGTTGGTTCCATCTACCGGAAGCACACGGCagtcatgttttgtaaataaactgttcgatttttaaatttgtagtCTTATGGCATTCGGTTTAGAAGGGGTACGATcgtaatttgtacatatttaagtGCTCGATGAATCTGTTAATGTAACGTTATTAGTTTAGGAATTTATATTGGTGGATATAAACTTTAACCAGGCACCTCACTCCATTGGTACCGCCATTTAACCTCCATAATGTGGGATGTTGAGATCAGGGGCATGGCATCGGCTCATGCCATTATTGCCTCCTCCATCTTCATGGCAACCGTGATGCCTGCTGTCTTCGTGGAAAACTTCTCTGTTTATGGGACCCACATGATTTGGCTGTATTGTGTAGCTGGATCTATTGCTGTGGTCAACATCGCAGTTTTTTGGCTTCTTGGCATCAGCCCGCCAGCAAAGAAGAACACACTGACCTACAAGATCAACAGATTGTTAAAATCATGTCTGCACTTTCTTCTGTCATGCCTTTTTTTTCACACCGTGGTGGTACTCTACGGAGCACCTTTgcttgaGTCAGCTCTGGAGACGTTTTCTCTGGCCGTGCTGCTGTCCACGCTCACCACATTGAGATGTCTCTGTATCCTGGGTCCTAATGTACAGGCATGGATCCGAGTTTTCAGCAGAGATGGGGCGATGTCAGTGTGGGACACGTCTCTTCAGATTACCACAGGCTGTAGTGTGATTGGGGCCTGGCTGGGAGCTTTCCCTATTCCTCTCGACTGGGACAGACCCTGGCAGGTTTGGCCCATCTCCTGTACGCTTGGGGCAACTACTGGATTTCTGACCGGCCTCCTCGCTGCTCCTGTCTGGATCCACTGGCATCGCAAACAACTCACCTACAAGCTCAAGTGAGGAAGAGAAGGACACGATCACAGGCCACCAGgaactgagagagaaagagatccAGGCTGGAGTCCACCCATTACGTGCTCTAAAAAATCTCAGAGGTCCCatttacaacaataaaaaaaccttttgtttctttgtttttctttttttttttttgtagagtaGATATTCGATTTGTTGTATGCTCCTAATGGCAGTATATTTATTCGATCGTTCCTCTCGTTCTTCCTGTAAATAAAGCCAGCGCTGACTTGAGACATTTTGTAAAAGGCAAATGTTTTGCAACCCAAACTGAGATTCTGAGTTTCCCTTTTTGAAGAAAGTCTTACTTCTGTAAATGGCCGACGGGTTTGGTTGTGCTGTTTAGGCTTGTCTACATCTCTCAGACGAACTCATGCATGCTGAGCCAGACATGGAAATACAGTTcgaattttttgtttttagtcacTGGAAAGGTTGTCCGTTCTCTGTGCTTGTATGTTCAATAAATCATCGTTGTCGGGTTTTCTTTGTA
>XM_043253697.1
tcctaaCAAATGCCACTCAATATACTTGTATCAACGTCTGTAGTCTTTgcagGTACCGCCATTTAACCTCCATAATGTGGGATGTTGAGATCAGGGGCATGGCATCGGCTCATGCCATTATTGCCTCCTCCATCTTCATGGCAACCGTGATGCCTGCTGTCTTCGTGGAAAACTTCTCTGTTTATGGGACCCACATGATTTGGCTGTATTGTGTAGCTGGATCTATTGCTGTGGTCAACATCGCAGTTTTTTGGCTTCTTGGCATCAGCCCGCCAGCAAAGAAGAACACACTGACCTACAAGATCAACAGATTGTTAAAATCATGTCTGCACTTTCTTCTGTCATGCCTTTTTTTTCACACCGTGGTGGTACTCTACGGAGCACCTTTgcttgaGTCAGCTCTGGAGACGTTTTCTCTGGCCGTGCTGCTGTCCACGCTCACCACATTGAGATGTCTCTGTATCCTGGGTCCTAATGTACAGGCATGGATCCGAGTTTTCAGCAGAGATGGGGCGATGTCAGTGTGGGACACGTCTCTTCAGATTACCACAGGCTGTAGTGTGATTGGGGCCTGGCTGGGAGCTTTCCCTATTCCTCTCGACTGGGACAGACCCTGGCAGGTTTGGCCCATCTCCTGTACGCTTGGGGCAACTACTGGATTTCTGACCGGCCTCCTCGCTGCTCCTGTCTGGATCCACTGGCATCGCAAACAACTCACCTACAAGCTCAAGTGAGGAAGAGAAGGACACGATCACAGGCCACCAGgaactgagagagaaagagatccAGGCTGGAGTCCACCCATTACGTGCTCTAAAAAATCTCAGAGGTCCCatttacaacaataaaaaaaccttttgtttctttgtttttctttttttttttttgtagagtaGATATTCGATTTGTTGTATGCTCCTAATGGCAGTATATTTATTCGATCGTTCCTCTCGTTCTTCCTGTAAATAAAGCCAGCGCTGACTTGAGACATTTTGTAAAAGGCAAATGTTTTGCAACCCAAACTGAGATTCTGAGTTTCCCTTTTTGAAGAAAGTCTTACTTCTGTAAATGGCCGACGGGTTTGGTTGTGCTGTTTAGGCTTGTCTACATCTCTCAGACGAACTCATGCATGCTGAGCCAGACATGGAAATACAGTTcgaattttttgtttttagtcacTGGAAAGGTTGTCCGTTCTCTGTGCTTGTATGTTCAATAAATCATCGTTGTCGGGTTTTCTTTGTA
>XM_043253698.1
ATATTATGCTTTGTTTAGTTGGTTCCATCTACCGGAAGCACACGGCagtcatgttttgtaaataaactgttcgatttttaaatttgtagtCTTATGGCATTCGGTTTAGAAGGGGTACGATcgtaatttgtacatatttaagtGCTCGATGAATCTGTTAATGTAACGTTATTAGTTTAGGAATTTATATTGGTGGATATAAACTTTAACCAGGCACCTCACTCCATTGGTACCGCCATTTAACCTCCATAATGTGGGATGTTGAGATCAGGGGCATGGCATCGGCTCATGCCATTATTGCCTCCTCCATCTTCATGGCAACCGTGATGCCTGCTGTCTTCGTGGAAAACTTCTCTGTTTATGGGACCCACATGATTTGGCTGTATTGTGTAGCTGGATCTATTGCTGTGGTCAACATCGCAGTTTTTTGGCTTCTTGGCATCAGCCCGCCAGCAAAGAAGAACACACTGACCTACAAGATCAACAGATTGTTAAAATCATGTCTGCACTTTCTTCTGTCATGCCTTTTTTTTCACACCGTGGTGGTACTCTACGGAGCACCTTTgcttgaGTCAGCTCTGGAGACGTTTTCTCTGGCCGTGCTGCTGTCCACGCTCACCACATTGAGATGTCTCTGTATCCTGGGTCCTAATGTACAGGCATGGATCCGAGTTTTCAGCAGAGATGGGGCGATGTCAGTGTGGGACACGTCTCTTCAGATTACCACAGGCTGTAGTGTGATTGGGGCCTGGCTGGGAGCTTTCCCTATTCCTCTCGACTGGGACAGACCCTGGCAGATGTCTAGACGAGACCGATTCATTACTGGAGAGAGGGGAAGCTGTAGGGAGGCAGTGATTCCTCCACACGTGATGATGGGAGCGTGAACTCTGGGGTGGTTCAATCCTGATGTCTAGCTTTAGAGAGTGGACGAGCCGTGTGACTCACACACAGATTCTCTCCTCCTCATTGCCATGACACTCTTGTAATATTGCAGCCCGTATTATGGTCTTGAGATAACTGGATAATCAATTCTGAGACCCAAATCAAGTATGAAGCGAAGAAATCTTATTCTctgtataaaacaaacagaaatgagTGCTGATCGTTATGTATTAGCCTATATTCAAAAATTTAGGGtcattaatagtttttttttatttaaaaaatgataattttatttagaaaggtTGCATGGCATTGATCAAATCCGGTAAGTACATAATATTGAACCTTCTTTACATCAAATAATCTACACACAAAAAGCAATGATAAGAAATCAGCATTTTAGTATTGtcaccacaggaataaattaaatttcagaTACAAAATCTTTAAATTACTGCAGTAATATTAGtgttttaccgtattttttattaaataaaattttatgcGCTTGCTTGGTAAGCACATAACATTTCTATCAAAACATTCTTTAAGACCCCAAAATTTTGAATGGTagccttatttttttttgtgtgtctgtcatatttcttaatatataaaaagaatttAATATGTATGTGCAACACTGAAATAAGGCATTCAAATCTATATAAAGAAGCAACGCGACTAAAAAAAggcaacatttttgaaaaacctGTTTTATACTCATTAAAGATCTTGAGGCAAGtcattaaaatttacatttttgtttatctaCTGCGGATTGGGCATCATCAGCAagttttcatattaattatgttCTTCCACAAAACCATTGTGCCTTTCAATTTTTAGATTTGCATTccatatatttactatttataaaggctttttttttttttttgtagttgttgcTCACAATGTGCTGGAAGCTTTAAAAGACCACTCAGACCACTCCACATATTTGCATGGACTGCgagaaattcataaaaaaaataaaaataaaaattgaataaaattttaaaatcaccTTGATATGAAGcaaaaattcaaaatgcaaaGCAGTCGGCACACACCTGAGAGGCAAGGCCACCAATACATAACACTCAAAACTCTacgttaaaaaaagaaagaggaataAAGCAGTCTCAAATAGAAAATTTGGTTGGTAAAACACCACAGTGAGTCAGTCAGCAGTAAGTCACTTGTGCTCCTGCAAAATGACAGTTTcgatcttcattttttttttttggctcttgTATCCAGGTTTGGCCCATCTCCTGTACGCTTGGGGCAACTACTGGATTTCTGACCGGCCTCCTCGCTGCTCCTGTCTGGATCCACTGGCATCGCAAACAACTCACCTACAAGCTCAAGTGAGGAAGAGAAGGACACGATCACAGGCCACCAGgaactgagagagaaagagatccAGGCTGGAGTCCACCCATTACGTGCTCTAAAAAATCTCAGAGGTCCCatttacaacaataaaaaaaccttttgtttctttgtttttctttttttttttttgtagagtaGATATTCGATTTGTTGTATGCTCCTAATGGCAGTATATTTATTCGATCGTTCCTCTCGTTCTTCCTGTAAATAAAGCCAGCGCTGACTTGAGACATTTTGTAAAAGGCAAATGTTTTGCAACCCAAACTGAGATTCTGAGTTTCCCTTTTTGAAGAAAGTCTTACTTCTGTAAATGGCCGACGGGTTTGGTTGTGCTGTTTAGGCTTGTCTACATCTCTCAGACGAACTCATGCATGCTGAGCCAGACATGGAAATACAGTTcgaattttttgtttttagtcacTGGAAAGGTTGTCCGTTCTCTGTGCTTGTATGTTCAATAAATCATCGTTGTCGGGTTTTCTTTGTA

Function

symbol description
pigf Predicted to enable mannose-ethanolamine phosphotransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Orthologous to human PIGF (phosphatidylinositol glycan anchor biosynthesis class F).

NR:

description
PREDICTED: phosphatidylinositol-glycan biosynthesis class F protein

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004307 ethanolaminephosphotransferase activity molecular_function

KEGG:

id description
K05287 PIGF; GPI ethanolamine phosphate transferase 2/3 subunit F

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253696.1 False 1415 mRNA 0.44 6 11007127 11013659
XM_043253697.1 False 1245 mRNA 0.46 6 11006964 11013659
XM_043253698.1 True 2773 mRNA 0.39 6 11007120 11013659

Neighbor

gene id symbol gene type direction distance location
gch2 gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138 coding upstream 2022 11000854 ~ 11004942 (+)
calm2b calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206 coding upstream 57923 10944753 ~ 10949041 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding upstream 109684 10888133 ~ 10897280 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding upstream 142519 10707898 ~ 10864445 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding upstream 386478 10614193 ~ 10620486 (+)
mta3 LOC107698822,LOC107582777,LOC107728718,LOC107700107,LOC108430512 coding downstream 42035 11055694 ~ 11082276 (+)
ppm1bb ppm1bb,LOC107582773,LOC107698817,LOC107749348,LOC107550052,LOC107700122,LOC108430462,LOC108273990,LOC107739221 coding downstream 127965 11141624 ~ 11165042 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding downstream 196592 11210251 ~ 11212765 (+)
prkcea prkcea,LOC107550054,LOC107698816,LOC107739250,LOC108274197,LOC108430457 coding downstream 216528 11230187 ~ 11277491 (+)
epas1a LOC107698815,LOC107550055,LOC107739260,LOC107700124,LOC107582769 coding downstream 264613 11278272 ~ 11298505 (+)
G87210 NA non-coding upstream 9970 10996730 ~ 10996994 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding upstream 19254 10981278 ~ 10987710 (+)
LOC122355200 NA non-coding upstream 51169 10954658 ~ 10955795 (+)
LOC122355308 NA non-coding upstream 67135 10916186 ~ 10939829 (+)
G87181 NA non-coding upstream 117339 10889418 ~ 10889625 (+)
G87222 NA non-coding downstream 27009 11040668 ~ 11040906 (+)
G87220 LOC107749353,LOC107550036,LOC107698821,LOC107700109,LOC107728709,LOC107582776 non-coding downstream 68541 11082200 ~ 11089057 (+)
LOC122355479 NA non-coding downstream 69739 11083398 ~ 11089158 (+)
trnai-uau_3 NA non-coding downstream 70618 11084277 ~ 11084370 (+)
LOC122355611 NA non-coding downstream 109264 11122923 ~ 11130890 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 424419 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 507266 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 510687 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1107963 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1132449 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 681185 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 868492 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 923182 11936841 ~ 11945635 (+)
G87817 NA other downstream 1719105 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1746715 12760374 ~ 12762731 (+)

Expression


Co-expression Network