rhoq (rhoq,LOC107550049,LOC107582780)


Basic Information

Item Value
gene id rhoq
gene name rhoq,LOC107550049,LOC107582780
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11012472 ~ 11027430 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253699.1
CAATCCGTGTTGGGCTCAAGAGTCAGAGGAGGTGATACCGGGGTTGGAAAGTAGGGAAAGTGGGACAGCGGTGAGGGCGTAGGGTGTTGAGCACGCGGCTTTTAGGTTGTCGTCTTGACGACGCAAAGTTTGTCGCTCGCTCCCGTCTCGTCAGAAGCGGCACGCGCTCGGCGTGTGCCAGTGTTGAGAGGGGAAAACCTCAGTCAGTGGCAAATTTGGGAAACGGGGTGGAGGAAATGgcatttcagctgtttttgctGCCCGAGCGcggcgctgctgctgctggtggaGGTGACGCCTGAAGGGAGCTTTACTAACGAGGGATATATCTCTGATAGCTGAAGATGGTGAATTCAAGTGTTTTATTATCGTCATGGCAAACGGAACCGGCAGCATCATGTTGAAATGCGTGGTCGTCGGCGACGGCGCCGTTGGAAAAACTTGTCTGTTGATGAGCTATGCCAACGACGCGTTTCCAGAGGAATATGTGCCCACTGTCTTTGATCATTATGCAGtgagtgTGACGGTTGGGGGAAAACAGTACCTGCTGGGGCTGTATGACACTGCGGGTCAGGAGGACTACGATCGCCTGCGACCCCTGTCCTACCCCATGACAGATGTCTTCCTCATTTGCTTCTCCGTGGTGAATCCGGCCAGCTTCCAGAACGTGAGAGAGGAGTGGGTCCCTGAGCTGCAGGAGTACGCACCCAACGTCCCTTACTTGCTCATTGGCACTCAGATTGACCTGCGGGACGACCCCAAGACTATTGCCAAGCTGAACGACGTGAAGGAGAAGCCCATTGCGACAGAACAAGGCCAAAAGCTAGCAAAGGAGATTGGTGCCTGCTGTTATGTTGAATGTTCAGCACTGACACAGAAAGGCCTGAAGACTGTGTTCGATGAGGCTATTATAGCCATTCTGGCTCCTAAGAAAGGTGCGCTCAAGCGAAGACTGGGCCCACGCTGCATCAACTGCTGCCTCATCACATGATACACCAGCTCAAGGGCATCCAGTGAACCAACGGTGACCAACTGACAAACAACCAGATTTCAATCTGACTTCTGAACTAAAGCAATGGGCCCAGGCACCTACAAGTCCAAGTTATGGGCGAACGACAAGAGGAACTGACAAAAAAGACATATTGTTGAGGGAGAAATTAATATTGGGAATGGAATACAAAGAAAACCCGACAACGATGATTTATTGAACATACAAGCACAGAGAACGGACAACCTTTCCAgtgactaaaaacaaaaaattcgAACTGTATTTCCATGTCTGGCTCAGCATGCATGAGTTCGTCTGAGAGATGTAGACAAGCCTAAACAGCACAACCAAACCCGTCGGCCATTTACAGAAGTAAGACTTTCTTCAAAAAGGGAAACTCAGAATCTCAGTTTGGGTTGCAAAACATTTGCCTTTTACAAAATGTCTCAAGTCAGCGCTGGCTTTATTTACAGGAAGAACGAGAGGAACGATCGAATAAATATACTGCCATTAGGAGCATACAACAAATCGAATATCtactctacaaaaaaaaaaaaagaaaaacaaagaaacaaaaggtttttttattgttgtaaatGGGACCTCTGAGATTTTTTAGAGCACGTAATGGGTGGACTCCAGCCTggatctctttctctctcagttcCTGGTGGCCTGTGATCGTGTCCTTCTCTTCCTCACTTGAGCTTGTAGGTGAGTTGTTTGCGATGCCAGTGGATCCAGACAGGAGCAGCGAGGAGGCCGGTCAGAAATCCAGTAGTTGCCCCAAGCGTACAGGAGATGGGCCAAACCTGGATAcaagagccaaaaaaaaaaaatgaagatcgAAACTGTCATTTTGCAGGAGCACAAGTGACTTACTGCTGACTGACTCACTGTGGTGTTTTACCAACCAAATTTTCTATTTGAGACTGCTTtattcctctttctttttttaacgtAGAGTTTTGAGTGTTATGTATTGGTGGCCTTGCCTCTCAGGTGTGTGCCGACTGCtttgcattttgaatttttgCTTCATATCAAggtgattttaaaattttattcaatttttatttttattttttttatgaatttctcGCAGTCCATGCAAATATGTGGAGTGGTCTGAGTGGTCTTTTAAAGCTTCCAGCACATTGTGAgcaacaactacaaaaaaaaaaaaaaagcctttataaatagtaaatatatggAATGCAAATCTAAAAATTGAAAGGCACAATGGTTTTGTGGAAGaacataattaatatgaaaactTGCTGATGATGCCCAATCCGCAGtagataaacaaaaatgtaaattttaatgaCTTGCCTCAAGATCTTTAATGAGTATAAAACaggtttttcaaaaa

Function

symbol description
rhoq Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including cell projection assembly; cortical actin cytoskeleton organization; and endocytosis. Predicted to act upstream of or within small GTPase mediated signal transduction. Orthologous to human RHOQ (ras homolog family member Q).

NR:

description
PREDICTED: rho-related GTP-binding protein RhoQ isoform X1

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07194 RHOQ, TC10; Ras homolog gene family, member Q

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253699.1 True 2363 mRNA 0.45 5 11012472 11027430

Neighbor

gene id symbol gene type direction distance location
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding downstream 15891 10985042 ~ 10996581 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding downstream 74459 10931862 ~ 10938013 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding downstream 81315 10918779 ~ 10931157 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding downstream 96588 10900253 ~ 10915884 (-)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 398970 10610648 ~ 10613502 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding upstream 22249 11049679 ~ 11054806 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding upstream 54775 11082205 ~ 11084036 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding upstream 91988 11119418 ~ 11122838 (-)
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding upstream 189862 11217292 ~ 11219552 (-)
sncgb LOC108430421,LOC107550059,LOC107700127 coding upstream 296971 11324401 ~ 11331793 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 116325 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 117755 10868848 ~ 10894717 (-)
G87376 NA non-coding downstream 147876 10816561 ~ 10864596 (-)
G87388 NA non-coding downstream 207734 10793063 ~ 10804738 (-)
G87164 NA non-coding downstream 406453 10605232 ~ 10606019 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding upstream 43819 11071249 ~ 11071765 (-)
G87449 NA non-coding upstream 81466 11108896 ~ 11165039 (-)
G87450 NA non-coding upstream 97017 11124447 ~ 11126279 (-)
G87409 NA non-coding upstream 231587 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 244311 11271741 ~ 11273302 (-)
cript cript,LOC107582781,LOC107728714 other downstream 5518 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1072623 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1523160 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2134341 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 2324902 8687498 ~ 8687570 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 15458 11042888 ~ 11045889 (-)
G87489 NA other upstream 293993 11321423 ~ 11322603 (-)
G87569 NA other upstream 805449 11832879 ~ 11835612 (-)
G87608 NA other upstream 921110 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1621953 12649383 ~ 12675472 (-)

Expression


Co-expression Network