stambpl1 (stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140)


Basic Information

Item Value
gene id stambpl1
gene name stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7636843 ~ 7646791 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253706.1
CATGATATACATGTACCTTTTCCGCCGCACAGTCGTTTCAAACCCCTTTAGCCGGTACACCGGACTCAAACCTAGTGAACTATACAGCGTTTGGGCATCAGAGAAGAATCCGGATACTGACTAGATAGGCTGCTGGTGAGGTTTTGAAACACAGCCAGTAAAAGCACCGCTGCTACAGCAGCATTTATCTGACTCGCAGAGCTCCGGGCGAACCATCTGACATCGCAGGGTTATTCGCTCTGAAAGACAGCAATCAGCCATTTTAGCCTTGCGCGCATATCCACGCCAAAAGAACAAAGCTTCCATGAGGCACAAAGGCAAAAGACCGAgagttttaaacaataataaaaaacctgCTCTTTTATTTACGCGAGTTGCCATGTTTTCGAACTGAATTCTAGCATGTGCCACATCTGACGATCGTAGGAATGTGGAGCATGGGATCACAGCAGCTCTTCACCTACAGTTCGGAATCGTCTTGGGAGATGACAGATGGATGCATAGGGAGGATCGAAGCCTGCCAGCCAACGTTGTAAACTCACCATGGACCAGGGCTTCAGTTTCAGCACACTGAAGAAGTTAGCGGCCGAGCCAGATCACACTGACGTTACTCTGCCAGCAGTCGAACGTGTGCGGGCCCTTAGCAAAATGGGCTAtaacattgaaataaatgaagacaTTGCCCCAAGACGCTACTTTCGTTCTGGCGTCGAGATGGAGCGTATGGCAGCTGTTTATTTAGAGGAGGGCAGTCTTGAGAATGCCTTTGTCCTCTACAACAAGTTCATCACTTTATTTGTAGAGAAACTCCCCAGTCACAGGGACTATCAGCAGTGCAACGTCCCTGAGAAGCAAGTGATAATGAAGAAATTGCAGGAAGTGGCCTTTCCACGAAAGGACCAATTGAAGAGACTTCTCCATGAGAAATACAGCAAAGAACACAGTGAATATCTAAAGAGTCAGGCTCAGGCCATGGCTGTTGACATGTGTAGTGAACGACTGCAAAAGATGTCTCTGTTGGAGGAGGAACGGCAACGTGTAGCACAGCTCAGGAAGATGCAAATCGAGTCCGAGCAGTTCCGCTACTTCGAGGACCAACTACGTAGACAAGAGCTGGCCAGTCGCAGGGATGAGGCTGTTCCCAAAGTGCCTGAACAAACCGACGGGTCCTGCTTATCCCAGACCCCGAGAAACCATGTGCGCCTTGACCCCAATCGTAACAAACCAGCGGCTCCTGTCCCCAAACCTGCAGCCACCTTAGCAGCTGTACAAAATCAGCGTGTCGAAGGCCTGAGGCGGGTTTTAATCCCACGAGACCTGACTTACAGGTTCCTCCTGCTGGCTGACAGTAACACGGCAAGAGGAATTGAGACGTGTGGAGTTCTCTGTGGAAAACTTACGCACAATGAGTTTGTGTTGACCCATGTGATCGTCCCCAAGCAGTCCGCTGGCCCTGACTACTGTGACATGGAGAACGTGGAAGAGCTGTTCAGTTATCAGGACCATCATAACCTTCTGACCTTGGGCTGGATCCATACACACCCGACACAGACAGcctttctctccagtgtggatctgcacacacacagctcctATCAGCTCATGCTACCTGAGGCCATCGCTATTGTTTGCGCACCTAAACACAATGACACGGGAGTGTTTCGACTCACCAGTACTGGGATGGGAGAAGTGGCCGGATGCAGGTTGAAAGGTTTTCACCCCCACTCTAAAGACCCTCCTCTGTTCACTGTAAGAACCCTCTGTTCCtgctgtaaatatgaaaatcagcAGCTTTCTGTGCCTTCTGTAACAAATGTTGACATCAAAACAGTAATACCTTTTAGAGaagtgaaacacatttttttatgtgtgtgtatatatatatatatatgtttgcagATTTGCAAGCACATTGTGGTGAAGGACGCGAAAACGACAGTTCTGGACCTCAGGTgacagaggaagagaggaaaTATTTCAGTATCAGCAAACCATTGAGAATATTTATATCTTTCTTTACTTGAAggcttttttgtatttatttattttacaaaaaggtACTGTGAAACAGAATCCCTCAGCTACACAGTGTGCTGTGAGCAGGTTTAATGAAGTTATTGAGATGTTCCAATGgcgttttgtgttttttaggtCATCATGCGCTTTTTGTTCGTGGCcaggtgttttttaaaaaaatgttgtggtCAGATGGTACTGTCTCTTATGATCTGACTACGGTCTTTGTCCTCAAGGTGGCGTGCTTTATCAAGGTATAATACGAGGCTGCCACAACGTGAATTGATTTCAGgacattttaaaaggtttaaaaagtgtgtgtgatttttgcCTTTTGATATCCAGCGATATCACTTGCAGTTCTCGTTCTAACACAATacacactgaagaagagaaattttctttttaaacctaACTGAATTTTCTAGTTTTGTGTATGCTgccagtacaaaaataaaacaagagtaaTTTCTAGGCCTTACTACATATTACTATCATTTTTGTGGTCGGATTGGTTGATAATTCTACTTTGTATATGCAGTCAGTTCAGATCATTTCAGGCTAATggatttctgtcttttttcagCCTAATGACGCAATATGAAGTTGGCCAGTGAACTGTTTTGATTTCCAacttaagcattttttttccagtgtggaTCTGATTGCAATGGAAGtgatgtttgaaataaataaacaagattgGGATCTCTTAGACCACACCAAAGTTCCCGTAACAGAATAAGCGAAGAAACCTAAGAGACATTACCACTGTTCTCAGGGATACATTCCCTCATTTTAAGGTCATTTTATGGTTTGAGAAGGAGACTTTTTGTCACCAGCGGAAGATAACATTTTACTTATGATGAATTGTGAACTAATTCATGCATTTCAGAAAGTGTTGAACATAACTTGTTTTTCTTGTACAATGCGGCATTGGGTTGTTTCTTTTAGTGTGTGGCTGTGTGCCAGTGGCTCCACTGAGATCGTGCTATGATGTTGTAGGTCTTTGTACTCAAGAGAGTACAACGAGGCTTATGTGTCTGTACAagcaccattttttttcccctcagcgCATTTCTTAATAAAAGCTAAACATCTGCTTTCAAA
>XM_043253707.1
ACCTTTTCCGCCGCACAGTCGTTTCAAACCCCTTTAGCCGGTACACCGGACTCAAACCTAGTGAACTATACAGCGTTTGGGCATCAGAGAAGAATCCGGATACTGACTAGATAGGCTGCTGGTGAGGTTTTGAAACACAGCCAGTAAAAGCACCGCTGCTACAGCAGCATTTATCTGACTCGCAGAGCTCCGGGCGAACCATCTGACATCGCAGGGTTATTCGCTCTGAAAGACAGCAATCAGCCATTTTAGCCTTGCGCGCATATCCACGCCAAAAGAACAAAGCTTCCATGAGGCACAAAGGCAAAAGACCGAgagttttaaacaataataaaaaacctgCTCTTTTATTTACGCGAGTTGCCATGTTTTCGAACTGAATTCTAGCATGTGCCACATCTGACGATCGTAGGAATGTGGAGCATGGGATCACAGCAGCTCTTCACCTACAGTTCGGAATCGTCTTGGGAGATGACAGATGGATGCATAGGGAGGATCGAAGCCTGCCAGCCAACGTTGTAAACTCACCATGGACCAGGGCTTCAGTTTCAGCACACTGAAGAAGTTAGCGGCCGAGCCAGATCACACTGACGTTACTCTGCCAGCAGTCGAACGTGTGCGGGCCCTTAGCAAAATGGGCTAtaacattgaaataaatgaagacaTTGCCCCAAGACGCTACTTTCGTTCTGGCGTCGAGATGGAGCGTATGGCAGCTGTTTATTTAGAGGAGGGCAGTCTTGAGAATGCCTTTGTCCTCTACAACAAGTTCATCACTTTATTTGTAGAGAAACTCCCCAGTCACAGGGACTATCAGCAGTGCAACGTCCCTGAGAAGCAAGTGATAATGAAGAAATTGCAGGAAGTGGCCTTTCCACGAAAGGACCAATTGAAGAGACTTCTCCATGAGAAATACAGCAAAGAACACAGTGAATATCTAAAGAGTCAGGCTCAGGCCATGGCTGTTGACATGTGTAGTGAACGACTGCAAAAGATGTCTCTGTTGGAGGAGGAACGGCAACGTGTAGCACAGCTCAGGAAGATGCAAATCGAGTCCGAGCAGTTCCGCTACTTCGAGGACCAACTACGTAGACAAGAGCTGGCCAGTCGCAGGGATGAGGCTGTTCCCAAAGTGCCTGAACAAACCGACGGGTCCTGCTTATCCCAGACCCCGAGAAACCATGTGCGCCTTGACCCCAATCGTAACAAACCAGCGGCTCCTGTCCCCAAACCTGCAGCCACCTTAGCAGCTGTACAAAATCAGCGTGTCGAAGGCCTGAGGCGGGTTTTAATCCCACGAGACCTGACTTACAGGTTCCTCCTGCTGGCTGACAGTAACACGGCAAGAGGAATTGAGACGTGTGGAGTTCTCTGTGGAAAACTTACGCACAATGAGTTTGTGTTGACCCATGTGATCGTCCCCAAGCAGTCCGCTGGCCCTGACTACTGTGACATGGAGAACGTGGAAGAGCTGTTCAGTTATCAGGACCATCATAACCTTCTGACCTTGGGCTGGATCCATACACACCCGACACAGACAGcctttctctccagtgtggatctgcacacacacagctcctATCAGCTCATGCTACCTGAGGCCATCGCTATTGTTTGCGCACCTAAACACAATGACACGGGAGTGTTTCGACTCACCAGTACTGGGATGGGAGAAGTGGCCGGATGCAGGTTGAAAGGTTTTCACCCCCACTCTAAAGACCCTCCTCTGTTCACTATTTGCAAGCACATTGTGGTGAAGGACGCGAAAACGACAGTTCTGGACCTCAGGTgacagaggaagagaggaaaTATTTCAGTATCAGCAAACCATTGAGAATATTTATATCTTTCTTTACTTGAAggcttttttgtatttatttattttacaaaaaggtACTGTGAAACAGAATCCCTCAGCTACACAGTGTGCTGTGAGCAGGTTTAATGAAGTTATTGAGATGTTCCAATGgcgttttgtgttttttaggtCATCATGCGCTTTTTGTTCGTGGCcaggtgttttttaaaaaaatgttgtggtCAGATGGTACTGTCTCTTATGATCTGACTACGGTCTTTGTCCTCAAGGTGGCGTGCTTTATCAAGGTATAATACGAGGCTGCCACAACGTGAATTGATTTCAGgacattttaaaaggtttaaaaagtgtgtgtgatttttgcCTTTTGATATCCAGCGATATCACTTGCAGTTCTCGTTCTAACACAATacacactgaagaagagaaattttctttttaaacctaACTGAATTTTCTAGTTTTGTGTATGCTgccagtacaaaaataaaacaagagtaaTTTCTAGGCCTTACTACATATTACTATCATTTTTGTGGTCGGATTGGTTGATAATTCTACTTTGTATATGCAGTCAGTTCAGATCATTTCAGGCTAATggatttctgtcttttttcagCCTAATGACGCAATATGAAGTTGGCCAGTGAACTGTTTTGATTTCCAacttaagcattttttttccagtgtggaTCTGATTGCAATGGAAGtgatgtttgaaataaataaacaagattgGGATCTCTTAGACCACACCAAAGTTCCCGTAACAGAATAAGCGAAGAAACCTAAGAGACATTACCACTGTTCTCAGGGATACATTCCCTCATTTTAAGGTCATTTTATGGTTTGAGAAGGAGACTTTTTGTCACCAGCGGAAGATAACATTTTACTTATGATGAATTGTGAACTAATTCATGCATTTCAGAAAGTGTTGAACATAACTTGTTTTTCTTGTACAATGCGGCATTGGGTTGTTTCTTTTAGTGTGTGGCTGTGTGCCAGTGGCTCCACTGAGATCGTGCTATGATGTTGTAGGTCTTTGTACTCAAGAGAGTACAACGAGGCTTATGTGTCTGTACAagcaccattttttttcccctcagcgCATTTCTTAATAAAAGCTAAACATCTGCTTTCAAA

Function

symbol description
stambpl1 Predicted to enable Lys63-specific deubiquitinase activity and thiol-dependent deubiquitinase. Predicted to be involved in protein K63-linked deubiquitination. Predicted to act upstream of or within protein deubiquitination. Predicted to be active in endosome and membrane. Orthologous to human STAMBPL1 (STAM binding protein like 1).

NR:

description
PREDICTED: AMSH-like protease isoform X2

GO: NA

KEGG:

id description
K11867 STAMBPL1; AMSH-like protease

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253706.1 True 3126 mRNA 0.44 10 7636843 7646791
XM_043253707.1 False 2962 mRNA 0.45 11 7636843 7646777

Neighbor

gene id symbol gene type direction distance location
ifit9 LOC107669232,LOC107753434,LOC107584193 coding downstream 22476 7612135 ~ 7614367 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding downstream 24851 7609394 ~ 7611992 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding downstream 28127 7604853 ~ 7608716 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding downstream 58642 7573171 ~ 7578201 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding downstream 81991 7552132 ~ 7554852 (-)
lipf lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444 coding upstream 4957 7651748 ~ 7662731 (-)
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding upstream 73596 7720387 ~ 7735245 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding upstream 100801 7747592 ~ 7754731 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding upstream 108066 7754857 ~ 7760517 (-)
usp42 usp42,LOC107753425,LOC107669212,LOC107724691,LOC107584191 coding upstream 131505 7778296 ~ 7789396 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding downstream 699 7634638 ~ 7636144 (-)
G86334 NA non-coding downstream 2287 7631396 ~ 7634556 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding downstream 19630 7615868 ~ 7617213 (-)
G86325 NA non-coding downstream 39845 7592801 ~ 7596998 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding downstream 45860 7588311 ~ 7590983 (-)
G86354 NA non-coding upstream 51874 7698665 ~ 7699014 (-)
G86356 NA non-coding upstream 58430 7705221 ~ 7705483 (-)
G86357 NA non-coding upstream 61069 7707860 ~ 7708194 (-)
G86375 NA non-coding upstream 199690 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 241175 7887966 ~ 7888246 (-)
G86203 NA other downstream 247933 7388236 ~ 7388910 (-)
G86108 NA other downstream 532625 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 965596 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1558775 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1624732 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 687613 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 864612 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 963761 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1035652 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1040707 8687498 ~ 8687570 (-)

Expression


Co-expression Network