lipf (lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444)


Basic Information

Item Value
gene id lipf
gene name lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7651748 ~ 7662731 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253708.1
TACATTGGCTGGCGTTACCTGTCATTCAAAACCATTCCGGTGTGCAACGTGAACTGCCTTCGTTTTGCGAAAACTCGGGGttgtaaaatgaaacatttaaacctCGATTTAACAACAATAAAGATGTCGTGGCTGGTGTTATCACTGGTACTGCTTGCATTTGGGCTGGTTCAGTGCAGGCCACCTGTTGAGGACAAGACAGGACTGGACCCTGAAGTAAATATGAACATCAGTGAGATCATCAGACACTGGGGCTACCCAGCTGAAGAATTTGAAGTGGTCACTGAGGATGGGTACATCCTGAGCATCAATCGAATCCCACACGGGGTCAAAAACAAGGATGGACAAGaagCCAAGCCTGTAGTGTTCCTTCAACATGGACTTCTCGCTGCTGGAAGTAACTGGGTGACAAACCTGCCCAACACGAGCCTGGGTTTCCTGCTAGCCGACGCTGGGTTTGATGTGTGGATAGGCAACAGCCGTGGGAACACCTGGTCTAGAAAACACATCAACCTTGACCCTAAACAGAAAGAATACTGGGAGTTCAGTCATGATGAACTGGCTAAGAAGGATCTTCCTGCAGTGATAAACTTCATTACAAACACCACTGGCCAGGAGAAACTCTTTTATGTGGGCCATTCCCAGGGAACCACTATAGCGTTCATCGCTTTCTCCACAATGCCGGAACTGGCCAGCAAAATCAAGATGTTCTTTGCTTTGGCTCCTGTTGCCACAGTGGGGCTGACCAAGAGCCCCATGACCAAATTGTCTGTTATTCCAGAATTTCTCATTTGGGATCTCTTTGGACGAAAGGACTTCTTTCCTCAGAATGAGTTGATTAAGTTTTTTGCCACCGAGTTCTGCAGCAGAAAGCCTTTAAGCGTGCTCTGCGGGAACgtcttctttcttctctgtgGTTTTGATGAGAAGAACCTGAACATGAGCCGAACACCTGTGTACACAACACACTGCCCAGCCGGAACCTCAGTCCAGAACATGGTTCATTGGgctcaggcCGTGAAATCCAGTAAGCTTACGGCATATGATTATGGAAAAGCTGGAAATATGGCACATTATAATCAGTCGACCCCTCCCCTGTACAACGTGCGGGACATGACGGTACCCACAGCCTTGTGGTCTGGCGGGCAGGATACTCTGGCAGATCCTCAGGACGTGGCACTACTACTAACACAGATACCCAAATTGGTGTACCACCGTGACATTAAGCACTGGGAACATCTGGACTTCATCTGGGGTTTGGATGCCCCGCAAGAGATGTACAACAAAATTATCGCAATGATGAGGGAGAACGTgtgaagaaacattttgtttgagCTGTAGGTTTTATCAGCAGTTTTTAACATTCCTTGAGCTAATACTTTCGTACCTCTTTATTTGTTCTTTCTGTAAGCAGATGAACCCGTTTGTTTGAGGTGCGGGTAATCGAATCTGCAATTTGCGAATGTAAATTTGATATTGGAAACTGAATTAAGCCTTCAAGCCATTACCCAGAGACTTTTGCGCTCATGATCAGGGGTTGCCTTTTAATGTCTTTTACAAGGACATGCActtgtttaatgtgtttttttaactttagcTTTTACTAACCACTACATCCTCAATCTCAATATACTGTAGCATTTCATGACCCGTCTTATCGCCTTGTCATTTAAATCGACtgatttttgtaaaacatgaCTAGAAATAAACATCCaccgaagaaaaaaaaaaagaa
>XM_043253709.1
GCAGCTATTGGCGCTTCATAAATGAATCGCACTTCTTAGGAGGGCGACTGATTGATTAAAGGCGTTCAAGAACAGTGATCAGGTCATGATGTCATTGTCAGCTGATGTTAAAGCATTTTCGTTGCTATCAGTGTGGTCGACTGAGGCTGCTCACTTTTGATTCCAGTACGCTGCTATGGAAGTTGGAAAGATGTCGTGGCTGGTGTTATCACTGGTACTGCTTGCATTTGGGCTGGTTCAGTGCAGGCCACCTGTTGAGGACAAGACAGGACTGGACCCTGAAGTAAATATGAACATCAGTGAGATCATCAGACACTGGGGCTACCCAGCTGAAGAATTTGAAGTGGTCACTGAGGATGGGTACATCCTGAGCATCAATCGAATCCCACACGGGGTCAAAAACAAGGATGGACAAGaagCCAAGCCTGTAGTGTTCCTTCAACATGGACTTCTCGCTGCTGGAAGTAACTGGGTGACAAACCTGCCCAACACGAGCCTGGGTTTCCTGCTAGCCGACGCTGGGTTTGATGTGTGGATAGGCAACAGCCGTGGGAACACCTGGTCTAGAAAACACATCAACCTTGACCCTAAACAGAAAGAATACTGGGAGTTCAGTCATGATGAACTGGCTAAGAAGGATCTTCCTGCAGTGATAAACTTCATTACAAACACCACTGGCCAGGAGAAACTCTTTTATGTGGGCCATTCCCAGGGAACCACTATAGCGTTCATCGCTTTCTCCACAATGCCGGAACTGGCCAGCAAAATCAAGATGTTCTTTGCTTTGGCTCCTGTTGCCACAGTGGGGCTGACCAAGAGCCCCATGACCAAATTGTCTGTTATTCCAGAATTTCTCATTTGGGATCTCTTTGGACGAAAGGACTTCTTTCCTCAGAATGAGTTGATTAAGTTTTTTGCCACCGAGTTCTGCAGCAGAAAGCCTTTAAGCGTGCTCTGCGGGAACgtcttctttcttctctgtgGTTTTGATGAGAAGAACCTGAACATGAGCCGAACACCTGTGTACACAACACACTGCCCAGCCGGAACCTCAGTCCAGAACATGGTTCATTGGgctcaggcCGTGAAATCCAGTAAGCTTACGGCATATGATTATGGAAAAGCTGGAAATATGGCACATTATAATCAGTCGACCCCTCCCCTGTACAACGTGCGGGACATGACGGTACCCACAGCCTTGTGGTCTGGCGGGCAGGATACTCTGGCAGATCCTCAGGACGTGGCACTACTACTAACACAGATACCCAAATTGGTGTACCACCGTGACATTAAGCACTGGGAACATCTGGACTTCATCTGGGGTTTGGATGCCCCGCAAGAGATGTACAACAAAATTATCGCAATGATGAGGGAGAACGTgtgaagaaacattttgtttgagCTGTAGGTTTTATCAGCAGTTTTTAACATTCCTTGAGCTAATACTTTCGTACCTCTTTATTTGTTCTTTCTGTAAGCAGATGAACCCGTTTGTTTGAGGTGCGGGTAATCGAATCTGCAATTTGCGAATGTAAATTTGATATTGGAAACTGAATTAAGCCTTCAAGCCATTACCCAGAGACTTTTGCGCTCATGATCAGGGGTTGCCTTTTAATGTCTTTTACAAGGACATGCActtgtttaatgtgtttttttaactttagcTTTTACTAACCACTACATCCTCAATCTCAATATACTGTAGCATTTCATGACCCGTCTTATCGCCTTGTCATTTAAATCGACtgatttttgtaaaacatgaCTAGAAATAAACATCCaccgaagaaaaaaaaaaagaa

Function

symbol description
lipf Predicted to enable hydrolase activity, acting on ester bonds. Acts upstream of or within response to hypoxia. Is expressed in gill. Human ortholog(s) of this gene implicated in Wolman disease; cholesterol ester storage disease; and lysosomal and lipase deficiency. Orthologous to human LIPA (lipase A, lysosomal acid type) and LIPF (lipase F, gastric type).
lipa Enables sterol esterase activity. Predicted to be involved in sterol metabolic process. Predicted to act upstream of or within several processes, including homeostasis of number of cells within a tissue; lung development; and tissue remodeling. Located in cytosol; fibrillar center; and nucleoplasm. Implicated in Wolman disease; cholesterol ester storage disease; and lysosomal and lipase deficiency.

NR:

description
unnamed protein product

GO:

id name namespace
GO:0001666 response to hypoxia biological_process
GO:0016042 lipid catabolic process biological_process
GO:0016788 hydrolase activity, acting on ester bonds molecular_function

KEGG:

id description
K01052 LIPA; lysosomal acid lipase/cholesteryl ester hydrolase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253708.1 False 1735 mRNA 0.45 10 7651748 7662378
XM_043253709.1 True 1802 mRNA 0.45 10 7651748 7662731

Neighbor

gene id symbol gene type direction distance location
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding downstream 4957 7636843 ~ 7646791 (-)
ifit9 LOC107669232,LOC107753434,LOC107584193 coding downstream 37381 7612135 ~ 7614367 (-)
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding downstream 39756 7609394 ~ 7611992 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding downstream 43032 7604853 ~ 7608716 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding downstream 73547 7573171 ~ 7578201 (-)
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding upstream 57656 7720387 ~ 7735245 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding upstream 84861 7747592 ~ 7754731 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding upstream 92126 7754857 ~ 7760517 (-)
usp42 usp42,LOC107753425,LOC107669212,LOC107724691,LOC107584191 coding upstream 115565 7778296 ~ 7789396 (-)
eif2ak1 eif2ak1,LOC107753420 coding upstream 126856 7789587 ~ 7795766 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding downstream 15604 7634638 ~ 7636144 (-)
G86334 NA non-coding downstream 17192 7631396 ~ 7634556 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding downstream 34535 7615868 ~ 7617213 (-)
G86325 NA non-coding downstream 54750 7592801 ~ 7596998 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding downstream 60765 7588311 ~ 7590983 (-)
G86354 NA non-coding upstream 35934 7698665 ~ 7699014 (-)
G86356 NA non-coding upstream 42490 7705221 ~ 7705483 (-)
G86357 NA non-coding upstream 45129 7707860 ~ 7708194 (-)
G86375 NA non-coding upstream 183750 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 225235 7887966 ~ 7888246 (-)
G86203 NA other downstream 262838 7388236 ~ 7388910 (-)
G86108 NA other downstream 547530 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 980501 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1573680 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1639637 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 671673 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 848672 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 947821 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1019712 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1024767 8687498 ~ 8687570 (-)

Expression


Co-expression Network