Item | Value |
---|---|
gene id | tcf7l2 |
gene name | tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 |
gene type | misc |
species | tiger barb (Puntius tetrazona) |
category of species | ornamental fish |
Item | Value |
---|---|
chromosome id | NC_056710.1 |
NCBI id | CM032079.1 |
chromosome length | 20499150 |
location | 13609420 ~ 13691340 (-) |
genome version | ASM1883169v1_2021_tiger_barb_Genome |
symbol | description |
---|---|
tcf7l2 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in digestive system development. Acts upstream of or within several processes, including diencephalon development; exocrine pancreas development; and intestinal epithelial structure maintenance. Located in nucleus. Is expressed in several structures, including anterior neural plate; brain; digestive system; gonad; and sensory system. Used to study type 2 diabetes mellitus. Human ortholog(s) of this gene implicated in colorectal cancer; diabetes mellitus (multiple); pancreatic cancer; and prostate cancer. Orthologous to human TCF7L2 (transcription factor 7 like 2). |
description |
---|
PREDICTED: transcription factor 7-like 2 isoform X1 |
id | name | namespace |
---|---|---|
GO:0060070 | canonical Wnt signaling pathway | biological_process |
GO:0006357 | regulation of transcription by RNA polymerase II | biological_process |
GO:0060729 | intestinal epithelial structure maintenance | biological_process |
GO:0044333 | Wnt signaling pathway involved in digestive tract morphogenesis | biological_process |
GO:0007420 | brain development | biological_process |
GO:0048699 | generation of neurons | biological_process |
GO:0005667 | transcription regulator complex | cellular_component |
GO:0043565 | sequence-specific DNA binding | molecular_function |
GO:0003682 | chromatin binding | molecular_function |
GO:0003700 | DNA-binding transcription factor activity | molecular_function |
GO:0008013 | beta-catenin binding | molecular_function |
id | description |
---|---|
K04491 | TCF7L2; transcription factor 7-like 2 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_043253756.1 | False | 4248 | mRNA | 0.44 | 15 | 13609420 | 13691336 |
XM_043253757.1 | True | 4249 | mRNA | 0.44 | 15 | 13609420 | 13691337 |
XM_043253758.1 | False | 4233 | mRNA | 0.44 | 15 | 13609420 | 13691336 |
XM_043253759.1 | False | 4234 | mRNA | 0.44 | 15 | 13609420 | 13691337 |
XM_043253760.1 | False | 4234 | mRNA | 0.44 | 15 | 13609420 | 13691337 |
XM_043253761.1 | False | 4218 | mRNA | 0.44 | 15 | 13609420 | 13691336 |
XM_043253762.1 | False | 4198 | mRNA | 0.44 | 14 | 13609420 | 13691337 |
XM_043253763.1 | False | 4198 | mRNA | 0.44 | 14 | 13609420 | 13691337 |
XM_043253764.1 | False | 4187 | mRNA | 0.44 | 14 | 13609420 | 13691335 |
XM_043253765.1 | False | 4182 | mRNA | 0.44 | 14 | 13609420 | 13691336 |
XM_043253766.1 | False | 4183 | mRNA | 0.44 | 14 | 13609420 | 13691337 |
XM_043253767.1 | False | 4172 | mRNA | 0.44 | 14 | 13609420 | 13691335 |
XM_043253769.1 | False | 4157 | mRNA | 0.44 | 14 | 13609420 | 13691335 |
XM_043253770.1 | False | 4147 | mRNA | 0.44 | 14 | 13609420 | 13691337 |
XM_043253771.1 | False | 4121 | mRNA | 0.44 | 13 | 13609420 | 13691335 |
XM_043253772.1 | False | 4106 | mRNA | 0.44 | 13 | 13609420 | 13691335 |
XM_043253773.1 | False | 4106 | mRNA | 0.44 | 13 | 13609420 | 13691335 |
XM_043253774.1 | False | 4086 | mRNA | 0.44 | 13 | 13609420 | 13691336 |
XM_043253775.1 | False | 4056 | mRNA | 0.44 | 13 | 13609420 | 13691336 |
XM_043253776.1 | False | 1996 | mRNA | 0.52 | 16 | 13611734 | 13691337 |
XM_043253777.1 | False | 1860 | mRNA | 0.52 | 15 | 13614147 | 13691338 |
XM_043253778.1 | False | 1998 | mRNA | 0.52 | 16 | 13611734 | 13691339 |
XM_043253779.1 | False | 1862 | mRNA | 0.51 | 15 | 13614147 | 13691340 |
XM_043253780.1 | False | 1872 | mRNA | 0.52 | 15 | 13614730 | 13691338 |
XM_043253781.1 | False | 1961 | mRNA | 0.52 | 16 | 13611734 | 13691338 |
XM_043253783.1 | False | 1824 | mRNA | 0.52 | 15 | 13614147 | 13691338 |
XM_043253784.1 | False | 4186 | mRNA | 0.43 | 11 | 13609420 | 13631901 |
XM_043253785.1 | False | 1946 | mRNA | 0.52 | 15 | 13611734 | 13691338 |
XM_043253786.1 | False | 1931 | mRNA | 0.52 | 15 | 13611734 | 13691338 |
XM_043253787.1 | False | 1919 | mRNA | 0.52 | 15 | 13611734 | 13691335 |
XM_043253788.1 | False | 1911 | mRNA | 0.52 | 15 | 13611734 | 13691339 |
XM_043253789.1 | False | 1804 | mRNA | 0.52 | 14 | 13611734 | 13691337 |
XR_006252218.1 | False | 2007 | transcript | 0.52 | 16 | 13611736 | 13691338 |
XR_006252219.1 | False | 2070 | transcript | 0.52 | 17 | 13611734 | 13691338 |
XR_006252220.1 | False | 1933 | transcript | 0.52 | 16 | 13614147 | 13691338 |
XR_006252221.1 | False | 2020 | transcript | 0.52 | 16 | 13611734 | 13691339 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
crygmxl2 | crygmxl2,LOC107566855,LOC107708427,LOC107702435,LOC107581669,LOC107684145 | coding | downstream | 52330 | 13555693 ~ 13557090 (-) |
crygmx | crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 | coding | downstream | 54395 | 13553556 ~ 13555025 (-) |
casp7 | casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 | coding | downstream | 164688 | 13436907 ~ 13444732 (-) |
LOC122355076 | LOC107566710,LOC107684141,LOC107581554 | coding | downstream | 186462 | 13418717 ~ 13422958 (-) |
LOC122355682 | NA | coding | downstream | 191164 | 13414181 ~ 13418256 (-) |
vti1a | vti1a,LOC107702459,LOC106589328,LOC107566351 | coding | upstream | 28331 | 13719671 ~ 13839456 (-) |
acsl5 | acsl5,LOC107702457,LOC107566323,LOC107722228,LOC107755526,LOC107581566,LOC107684041 | coding | upstream | 154833 | 13846173 ~ 13854773 (-) |
tectb | tectb,LOC107755437,LOC107702437,LOC107566341,LOC107581573,LOC107684045,LOC107722201 | coding | upstream | 173486 | 13864826 ~ 13872555 (-) |
nat9 | LOC107702469,LOC107566461,LOC107581577,LOC107722187 | coding | upstream | 309338 | 14000678 ~ 14003093 (-) |
grin2cb | grin2c,LOC107755516,LOC107702470,LOC107722186,LOC107684146,LOC107581635 | coding | upstream | 352231 | 14043571 ~ 14081743 (-) |
G88035 | nrap,LOC107702452,LOC107755535 | non-coding | downstream | 148175 | 13460145 ~ 13461245 (-) |
G88034 | nrap,LOC107755535,LOC107702452 | non-coding | downstream | 149555 | 13458456 ~ 13459865 (-) |
G88019 | NA | non-coding | downstream | 175295 | 13433894 ~ 13434125 (-) |
G88003 | NA | non-coding | downstream | 241100 | 13365953 ~ 13368320 (-) |
G87860 | gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 | non-coding | downstream | 801774 | 12804696 ~ 12807646 (-) |
LOC122355666 | NA | non-coding | upstream | 17715 | 13709055 ~ 13712541 (-) |
G88146 | NA | non-coding | upstream | 133260 | 13824600 ~ 13894358 (-) |
G88205 | NA | non-coding | upstream | 302320 | 13993660 ~ 13994186 (-) |
G88206 | NA | non-coding | upstream | 303032 | 13994372 ~ 13995952 (-) |
G88233 | NA | non-coding | upstream | 440579 | 14131919 ~ 14133138 (-) |
entpd1 | LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 | other | downstream | 69119 | 13523668 ~ 13540301 (-) |
LOC122355808 | LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 | other | downstream | 177225 | 13424308 ~ 13432195 (-) |
G87845 | LOC107675011 | other | downstream | 856742 | 12751904 ~ 12752678 (-) |
prr15lb | prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 | other | downstream | 933948 | 12649383 ~ 12675472 (-) |
G87608 | NA | other | downstream | 1658265 | 11948540 ~ 11951155 (-) |
srsf2a | srsf2,LOC107702465,LOC107566380,LOC107684046 | other | upstream | 281542 | 13972882 ~ 13976511 (-) |
G88250 | LOC107702476 | other | upstream | 456707 | 14148047 ~ 14150005 (-) |
G88365 | NA | other | upstream | 850226 | 14541566 ~ 14643780 (-) |
LOC122355209 | NA | other | upstream | 1011228 | 14702568 ~ 14706251 (-) |
ndufaf8 | NA | other | upstream | 1602493 | 15293833 ~ 15295240 (-) |