vwa2 (vwa2,LOC107755546,LOC107702446,LOC107707947)


Basic Information

Item Value
gene id vwa2
gene name vwa2,LOC107755546,LOC107702446,LOC107707947
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13307621 ~ 13324695 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253834.1
CCAGCAGTGAGACTGACACTTCAGTACCTGCGGGGAGAACAGGACGGTCGTGTCATTGAGAGGCGAGGGTGTAAAAATGTCCTCTAGTAGCCGGTTGCATCTTCTTCTCATGCTCCTGTTTGGTCAAGTTTGGTCCATTTCCTCTGTGCAGGAAATGCAGACGGATCTTGAAACCATAATGAAGATAAATGCTGCTGGAGAAATGATGCAGTGCTCCGCAGCAATGGATATTATCTTTGTGATGGATAGCTCTTACAGCGTTGGGAAAGGAGGATTTGAGCGGTCCCGCCACTACGTGTTGAAGCTGAGTGAGGCTCTCGATGTCAGCGCAGACAAGGTGAGAGTCGGCGTGATTCAGTTTGGCTCCACACCCAAGCTGGAAATCAGTCTAGATTCTTACAAGAGCAAAGAGGAGCTGaagaaaaagatgaagaaaatCCACTATAGAGGTGGAAGCACACAGACAGGGCTGGCTCTGAAGTTCGTTCTGAGGAAGGGGTTTTCCGGCGGACGCAATTCCACAGTGACACGCGTCGTCATCCTCTTATCCGACGGAAAGTCCCAGGGGGCAGTGCAGCTGGCTGCCTCTGAGCTCAAACTGTCTGGAGTGACTCTGTTTGCTGTGGGGATCCGTTACCCCAGATGGGAAGAGCTCCGTGAATTGGCGAGCAGCCCTTCAGACACTCATGTGTTTTTCGCGGAGCACTTCAGTGATGCTGTAAATGGATTATTCACCACCCTCACCACCTCATCTGTCTGCACTGCCGTACCTTCAGGGTGTAAAGTGAAGTCTTACCCCTGTGTTCAAAAAACCTTGGAGACAGTCAAAGAGCTTCAGGGAAACTTCATGTGCTGGAAGGGTTCCAAGGGACACTCAGCATTCACATCCCTCTGCCCTCATTACAGGTATAACAAAGTTTACAGGCAACACCCTGTTGTGTGTCACAGAACTACATGTCCAGACCCCTGTGACTCTCAGCCCTGCCAGAACGGTGGGACGTGTATATCTGAGGGTCTGGACAAGTACCGCTGCGAGTGTCCCGCAGGCTACGGCAGTGACCCCAATTGCGCTCCCATTCTGAGTTTCGACTGCTCCGTGGATGTGCTCTTCCTGGTCGAGGGCTCCTCTGCACTTACTCTGGAGGGTTTCTTACGCCTCAAGTCCTTCCTGAAGCGCTTCATGCAGGCTGTACTGAGTTCGGACACCCCTGTGAAGATGGGGTTGGCCCAGTATGGAAGGGACGTGAAGATAGAAGCCAAAATCGGGGAGCACAGAGATCCTGCAAAGCTAATCCAGGCTGTTGAGGGCATGCAGTTTCGGGGTGGGCAGGCCAAGGCTGGAAACGCCCTTCGCTACATCACGCACCACGGCTTCCAAAGCGCACCCGTGTTTGCCGATGTTCAGGACGATCTGCCGCGGGTGGTAGTGCTGCTCACGGGAACACCATCTGTGGACCCTGTGGTGGAGCCGTCGAAGTACGCGCGGGACAGAGAGATCTTCATCATTGGTGTAGCACCGGATGGGATGAGGGCTGAAATAAACAACATCACGGCGAACCCCCAGCGCACCATCACATACCAGTCACCTGACAGATTGAGCGCAAAGATCCCAGAGCTAAGAGCCAAAATTTGCAGCGTCGACAACCAGGGCTGTCTGGGTCAAGCTTTGGACCTTGTTTTTGTGTTGGATGCCTCCAGCGGTGTAGGAAAGGACAACTTCGTTCAACTTCAAGACTTTGTTCGCAGCACCTCGGTGCAGTTTGACATCAATCGAGATGTGGCTCAGGTGGGACTGGTGGTTTATGGGAGGCGACCCGTCACAGTTTTTGACCTGGACAAGTATGACTCGGGCTCCGCTGTGCTGAAGGCGGTGGGAGATGCTGCTTTTCTGGGTGGGAAGGCCTCAACAGGTTCAGCCCTGCTCCATGTGCTCTCCCAAAGCCTGACGGTGGGGAAAGGAGCACGGCCTGGAGTCAACAAGGCCGTGGTGGTCTTGACTGATGGGACGAGTGCCGAAGATGCAGCGGTTCCTGCTCAGAAGATCCGGGATAGCGGAGTGTCAGTGTTCGTGATTGGCATCGGGGACATACATCAGGAGGTTCTCTTCCGCATCACCGGCTCTGAGGATCACATGATCTCTGTACCTTCGTATGATGACCTGAAATACTCTGAGGATGTGCTGGTACAGATGGTGTGTGCAGATGTGAAGAAACCTGTTAACCTGTGCAATCCAAACCCGTGTATGAATGATGGCACCTGTGTGCTGCTCAACGGCAGTTACCGTTGTGACTGCAATGGTTGGAAGGGTCCACACTGCGAAACACGAAGCAGAGAGCAGCCACCCAGAGGAGATCTTCCTAAACCTGCAGGCCTGAGACGCCGTCAGCACAAGAATGAAAAAGAGCTGCTGCAGCGCTATAGGCAGCACCGCAGGAGACAAGCATCCCCAGCACAGCACagataaaggggaaaaaaacagacagagagacacagcaATGCGAGGTAGAAATCATTCTCAATTCACGTTGACTTAAAATACTGATGAACACTCAGGTAACACACCAAGTGGGATCTATTTCATGAATTTTGTAAATGCTATTAATGACTtaattgaggatttttttttattattatttgtggtcAGTCTTAAGggttttaatgctgtttatataGTTTATCCAGCACTGAAAATCCTGAATATATATTCTGTCTGAGATTTGTCATATTGAAAAATCCTTGTTACAGAAAGCCTCGTGTTAGAGGCTTATGTTTttgagtatatttattttgtattaactACATTGGTGTGTAAGTCTGTTGTAAAgctattaaa

Function

symbol description
vwa2 Predicted to enable calcium ion binding activity. Acts upstream of or within epithelial structure maintenance. Predicted to be active in basement membrane and extracellular space. Is expressed in several structures, including fin; median fin fold; myoseptum; nervous system; and somite. Orthologous to human VWA2 (von Willebrand factor A domain containing 2).

NR:

description
PREDICTED: von Willebrand factor A domain-containing protein 2

GO: NA

KEGG:

id description
K24508 VWA2; von Willebrand factor A domain-containing protein 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253834.1 True 2833 mRNA 0.51 14 13307621 13324695

Neighbor

gene id symbol gene type direction distance location
LOC122355472 NA coding downstream 11367 13293736 ~ 13296254 (-)
trub1 trub1,LOC107755443,LOC107689966,LOC107702428,LOC107708440 coding downstream 104751 13199764 ~ 13202870 (-)
atrnl1b atrnl1b,atrnl1,LOC107755548,LOC107689951,LOC107708169,LOC107702414 coding downstream 110536 13113810 ~ 13197085 (-)
nrg3b nrg3b,LOC107678479,LOC107566665,LOC107689960,LOC107563798,LOC107754077 coding downstream 287918 12900935 ~ 13019703 (-)
sh2d4bb LOC107754115,LOC107565991,LOC107675008,LOC107689965,LOC108273974,LOC107722446 coding downstream 421457 12879600 ~ 12886164 (-)
tdrd1 LOC107702448,LOC107755540,LOC107566104,LOC107581549,LOC107708149,LOC107689961 coding upstream 458 13325153 ~ 13334792 (-)
adrb1 adrb1,LOC107755541,LOC107566002,LOC107702449,LOC107689959,LOC107581665 coding upstream 47794 13372489 ~ 13375488 (-)
nhlrc2 nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116 coding upstream 56949 13381644 ~ 13398387 (-)
plekhs1.1 LOC107566815,LOC107755416,LOC107702419 coding upstream 81098 13405793 ~ 13410281 (-)
LOC122355682 NA coding upstream 89486 13414181 ~ 13418256 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 499975 12804696 ~ 12807646 (-)
LOC122355629 NA non-coding downstream 668885 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 820226 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 960555 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 1154884 12152240 ~ 12152737 (-)
G88003 NA non-coding upstream 41258 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 109199 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 133761 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 135450 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 384360 13709055 ~ 13712541 (-)
G87845 LOC107675011 other downstream 554943 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 632149 12649383 ~ 12675472 (-)
G87608 NA other downstream 1356466 11948540 ~ 11951155 (-)
G87569 NA other downstream 1472009 11832879 ~ 11835612 (-)
G87489 NA other downstream 1985018 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 99613 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 198973 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 284725 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 648187 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 823352 14148047 ~ 14150005 (-)

Expression


Co-expression Network