socs5a (LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045)


Basic Information

Item Value
gene id socs5a
gene name LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10985042 ~ 10996581 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253847.1
GCCGGAACACAGAACTTCGCGCAATTGGAGTCCCTCGATGTCAGTCAACAGCAGCTTTGCCACCACCTCTCCTGATTCTCTTCTCTGCTGCACTTGGCGACCATATCGGCCGTCAGGGAAAGAAATGCCAACGGGATGAGGGGATCGTAGGCcatgtaaatacaaaatgttaaacGTTTACGAGTTCATCGACACATTGACGCGCAGTTTGCTTTTCGATGATCGCAGTTATGGTCCCGATCGTATCCCGTCCGTGTGTTTTATCCACCACCGTCTGTAGCCTCGGGAAAACGCACCCGACTGTTCTTGATAGCATTTTTTTCGCAAACAAAAGAAGACACccgaaaaaacaataaaagagcGCGACAGAAGGATCGATCCAGGTGCCCCCACCTCATGGAGAAAGTTGGCAAGGTGTGGAGCAACCTTAAGAAGGGATGTCAATCTCTGCTCCACACAGATGGGGGTTCTCGCATTGAAAGGCCACCACAGCTTCAACCGCAAACAGACACTGTTTGCCAGAGTGGGGACAAGGCCCAGGCAGACATCACTCTGGAGGCTGTTAGTCCCTCTAGCAGTGTGGCAGCACTCCCTCTAGTGGCATGGAGGACCAGTGGGAGTGTGACACGACAGGGCCACAACTGTGTAGTGGATGTACCCCAGATACTAGAGATCACAGTCGAGCAGGATACTGAAGATGCTCGAGCTCCCTTGGGAGCTCGGAGAGACTCTTACTCACGTCATGCACCTTGGAGTGGAAAGAAGAGACACTCGTGTTCCACTAAGGCTCAGAGCTCTCTGGAGACCACAGATCGACGATCAGGTCGGTCTCGGCGCAGGCATGGGGCTGGTAGCAGCCGTGAGGAACTGGAGTCAGGGGGAGCACGCTCCCTACGGCAGCAGATTCATGATACAGTGGGCCTGTGCCTGCCACTGCGTTCATCCTCTCGGAACACTCACCTTCCACCACCCAAACGTAAGATACAAATCACAGAGCTGATGCTAGAGACATGCCCCTTCGCTCCAGGATCAGACCTTGCCCGAAAATGGCACCTCATTAAACAGCACACAGCACCAGTCACAGTGACACAAGTAGATTCATCCACAGATGCTTGCAGTGCTACCTGTGCATCTCCGGAAGATGAAGAGGAGCGCTTGAGAGAGAGAAGACGACTCAGCATTGAGGAGGGTGTTGACCCACCTCCAGATGCCCAAATTCACACAGTGGAGGCTATCACAGCGCCTCTGGCTTCCCTTTATAAACTGGGACCTAAATTGGCCCCTGGAATGGGTGAGGCCACAGGAGATAGCCGGGGGGCAACAGCAGCTAACTGTGACTCTGAGGATGACGATACCACCACTCTTTGCTTGCAAGCTCGCAGGCCCAAGCAGCGGCACGCTTCGGCGGAGGGCATCCTGAGCAGCAAGCAACAGGGGCCTTGGAAAGTACACACTCAGATTGACTACATACACTGCTTGGTTCCAGATCTGCTACAGATCACAGCACTTCCCTGCTACTGGGGTGTGATGGACCGTTATGAGGCTGAAGCACTGCTGGATGGTCGGCCTGAGGGAACCTTTCTCCTGCGAGACTCGGCTCAAGAAGACTACCTGTTTTCTGTTAGCTTCCGCCGCTATGGCCGTTCGTTGCACGCTCGCATTGAGCAGTGGAATCACAACTTCAGTTTTGATGCACACGACCCTTGCGTGTTCCATGCAGCCACCGTCACGGCACTCTTGGAACACTACAAGGACCCTAGCGCTTGCATGTTCTTTGAGCCATTGCTCACTGTTCCTCTGCACCGGACTTTTCCATTTGGCCTGCAAAGCCTGGCTCGATCAGCCATTTGCGGTGGGGTCACCTACGATGGCATCGGGGCACTGCCACTGCCCCCTGCTCTGCAGGACTACCTCAGGGAGTATCATTATAAGCAGAGGGTCCGCGTACGCTGGCTTGAGAGAGAACCAGTCAAGGCCAAGTGAGGCAGGGCAGATACTTCTCAGCTCTCCAACAGGAGTAGTCCATTCAGCACTTTGCAGAGGTGGaggaattagttttttttggggtgggggGATGTTCAGGGTTGAAAGGAGGGACCTGAAACTGAACACTATATAAGCTCCtatcatttttttatcactcttaacaaacaaaagaaattacATATACAGTGGCTCTCCAGTGTGCACATTTCATTACAGCTTCTGGAATAGAAAGCAGCAGCCGAGGTCTCATTTTCCCTTCTCCCTCAGTTTCCATGGCTATGGGGGAATCTGCAGATACAGATATTTTCATACCCCTCCACTCTTTCACTGCTTGACTTTGTGGTTTATAGccatttcactttatttttgttgtacCGTTTACCTGCTCTCAAATCCCTTACGttaaatatgcattgttaaTGTTCAAAGTAACATTGCGGACAAATTTTGAGAGAAGGGGAAATGAAGGGTGATGTTCAAATATTGCTTTCCCAGCTTCTTTCATCATCCTTAGCTTTTATGGTGCTCTGTCAGTGGTTCCTATGGTAACATTCTGCGCTCATTCCGTTGTTAAAGGAGGAGGCATTCTAGAGCAGGACATAGAAAGGCTTTCATCCTGCTCATAGAGAACGAGACGAAGAAATCATGAAAGATGGATTGACTTTAAACTATGTGTCCAGACAGCTTTTGGGAATGCGTTGCAGTGGAGAGAAGGGTTCTATGGCATTCTGCTTCCAGGAAGCGATAAGATGTGCACAACGTGGCACGGTGTGATGTGAGAGTGCtcggttttcaaaaaacatagtTACTCACACTCTGCGTTCTGTTGCTGTCAATGTTTTGTAATCATTAATTCCTACCACTAATTGCACAGGGGGGTGACTAATTCTGTATCGtcttttttgtattgatttgaATGGTCTATCAGTGCCCTGGAGGTTGGGCGCTGGTTGAGAGcactttaactttaactgtGCTTATGTTAGTGGGTGAAGCAAAGGCAATACATTAACCTGCTACACTGGGACCATTGCTTTTAGACATAAACACCCTCCTATATAGGAATAAA
>XM_043253848.1
CGCCGGAACACAGAACTTCGCGCAATTGGAGTCCCTCGATGTCAGTCAACAGCAGCTTTGCCACCACCTCTCCTGATTCTCTTCTCTGCTGCACTTGGCGACCATATCGGCCGTCAGGGAAAGAAATGCCAACGGGATGAGGGGATCGTAGGCcatATCCAGGTGCCCCCACCTCATGGAGAAAGTTGGCAAGGTGTGGAGCAACCTTAAGAAGGGATGTCAATCTCTGCTCCACACAGATGGGGGTTCTCGCATTGAAAGGCCACCACAGCTTCAACCGCAAACAGACACTGTTTGCCAGAGTGGGGACAAGGCCCAGGCAGACATCACTCTGGAGGCTGTTAGTCCCTCTAGCAGTGTGGCAGCACTCCCTCTAGTGGCATGGAGGACCAGTGGGAGTGTGACACGACAGGGCCACAACTGTGTAGTGGATGTACCCCAGATACTAGAGATCACAGTCGAGCAGGATACTGAAGATGCTCGAGCTCCCTTGGGAGCTCGGAGAGACTCTTACTCACGTCATGCACCTTGGAGTGGAAAGAAGAGACACTCGTGTTCCACTAAGGCTCAGAGCTCTCTGGAGACCACAGATCGACGATCAGGTCGGTCTCGGCGCAGGCATGGGGCTGGTAGCAGCCGTGAGGAACTGGAGTCAGGGGGAGCACGCTCCCTACGGCAGCAGATTCATGATACAGTGGGCCTGTGCCTGCCACTGCGTTCATCCTCTCGGAACACTCACCTTCCACCACCCAAACGTAAGATACAAATCACAGAGCTGATGCTAGAGACATGCCCCTTCGCTCCAGGATCAGACCTTGCCCGAAAATGGCACCTCATTAAACAGCACACAGCACCAGTCACAGTGACACAAGTAGATTCATCCACAGATGCTTGCAGTGCTACCTGTGCATCTCCGGAAGATGAAGAGGAGCGCTTGAGAGAGAGAAGACGACTCAGCATTGAGGAGGGTGTTGACCCACCTCCAGATGCCCAAATTCACACAGTGGAGGCTATCACAGCGCCTCTGGCTTCCCTTTATAAACTGGGACCTAAATTGGCCCCTGGAATGGGTGAGGCCACAGGAGATAGCCGGGGGGCAACAGCAGCTAACTGTGACTCTGAGGATGACGATACCACCACTCTTTGCTTGCAAGCTCGCAGGCCCAAGCAGCGGCACGCTTCGGCGGAGGGCATCCTGAGCAGCAAGCAACAGGGGCCTTGGAAAGTACACACTCAGATTGACTACATACACTGCTTGGTTCCAGATCTGCTACAGATCACAGCACTTCCCTGCTACTGGGGTGTGATGGACCGTTATGAGGCTGAAGCACTGCTGGATGGTCGGCCTGAGGGAACCTTTCTCCTGCGAGACTCGGCTCAAGAAGACTACCTGTTTTCTGTTAGCTTCCGCCGCTATGGCCGTTCGTTGCACGCTCGCATTGAGCAGTGGAATCACAACTTCAGTTTTGATGCACACGACCCTTGCGTGTTCCATGCAGCCACCGTCACGGCACTCTTGGAACACTACAAGGACCCTAGCGCTTGCATGTTCTTTGAGCCATTGCTCACTGTTCCTCTGCACCGGACTTTTCCATTTGGCCTGCAAAGCCTGGCTCGATCAGCCATTTGCGGTGGGGTCACCTACGATGGCATCGGGGCACTGCCACTGCCCCCTGCTCTGCAGGACTACCTCAGGGAGTATCATTATAAGCAGAGGGTCCGCGTACGCTGGCTTGAGAGAGAACCAGTCAAGGCCAAGTGAGGCAGGGCAGATACTTCTCAGCTCTCCAACAGGAGTAGTCCATTCAGCACTTTGCAGAGGTGGaggaattagttttttttggggtgggggGATGTTCAGGGTTGAAAGGAGGGACCTGAAACTGAACACTATATAAGCTCCtatcatttttttatcactcttaacaaacaaaagaaattacATATACAGTGGCTCTCCAGTGTGCACATTTCATTACAGCTTCTGGAATAGAAAGCAGCAGCCGAGGTCTCATTTTCCCTTCTCCCTCAGTTTCCATGGCTATGGGGGAATCTGCAGATACAGATATTTTCATACCCCTCCACTCTTTCACTGCTTGACTTTGTGGTTTATAGccatttcactttatttttgttgtacCGTTTACCTGCTCTCAAATCCCTTACGttaaatatgcattgttaaTGTTCAAAGTAACATTGCGGACAAATTTTGAGAGAAGGGGAAATGAAGGGTGATGTTCAAATATTGCTTTCCCAGCTTCTTTCATCATCCTTAGCTTTTATGGTGCTCTGTCAGTGGTTCCTATGGTAACATTCTGCGCTCATTCCGTTGTTAAAGGAGGAGGCATTCTAGAGCAGGACATAGAAAGGCTTTCATCCTGCTCATAGAGAACGAGACGAAGAAATCATGAAAGATGGATTGACTTTAAACTATGTGTCCAGACAGCTTTTGGGAATGCGTTGCAGTGGAGAGAAGGGTTCTATGGCATTCTGCTTCCAGGAAGCGATAAGATGTGCACAACGTGGCACGGTGTGATGTGAGAGTGCtcggttttcaaaaaacatagtTACTCACACTCTGCGTTCTGTTGCTGTCAATGTTTTGTAATCATTAATTCCTACCACTAATTGCACAGGGGGGTGACTAATTCTGTATCGtcttttttgtattgatttgaATGGTCTATCAGTGCCCTGGAGGTTGGGCGCTGGTTGAGAGcactttaactttaactgtGCTTATGTTAGTGGGTGAAGCAAAGGCAATACATTAACCTGCTACACTGGGACCATTGCTTTTAGACATAAACACCCTCCTATATAGGAATAAA
>XM_043253850.1
GGGGAAAagtgtttggacatgtctgctTTGTGGTAGTGAACCGAAAGGAGAAGATAATCAGAAAGAGAAGATTTTTCCTAAGTGAATTGAGAATTTAATGAGGCGAAAAATCCAGGTGCCCCCACCTCATGGAGAAAGTTGGCAAGGTGTGGAGCAACCTTAAGAAGGGATGTCAATCTCTGCTCCACACAGATGGGGGTTCTCGCATTGAAAGGCCACCACAGCTTCAACCGCAAACAGACACTGTTTGCCAGAGTGGGGACAAGGCCCAGGCAGACATCACTCTGGAGGCTGTTAGTCCCTCTAGCAGTGTGGCAGCACTCCCTCTAGTGGCATGGAGGACCAGTGGGAGTGTGACACGACAGGGCCACAACTGTGTAGTGGATGTACCCCAGATACTAGAGATCACAGTCGAGCAGGATACTGAAGATGCTCGAGCTCCCTTGGGAGCTCGGAGAGACTCTTACTCACGTCATGCACCTTGGAGTGGAAAGAAGAGACACTCGTGTTCCACTAAGGCTCAGAGCTCTCTGGAGACCACAGATCGACGATCAGGTCGGTCTCGGCGCAGGCATGGGGCTGGTAGCAGCCGTGAGGAACTGGAGTCAGGGGGAGCACGCTCCCTACGGCAGCAGATTCATGATACAGTGGGCCTGTGCCTGCCACTGCGTTCATCCTCTCGGAACACTCACCTTCCACCACCCAAACGTAAGATACAAATCACAGAGCTGATGCTAGAGACATGCCCCTTCGCTCCAGGATCAGACCTTGCCCGAAAATGGCACCTCATTAAACAGCACACAGCACCAGTCACAGTGACACAAGTAGATTCATCCACAGATGCTTGCAGTGCTACCTGTGCATCTCCGGAAGATGAAGAGGAGCGCTTGAGAGAGAGAAGACGACTCAGCATTGAGGAGGGTGTTGACCCACCTCCAGATGCCCAAATTCACACAGTGGAGGCTATCACAGCGCCTCTGGCTTCCCTTTATAAACTGGGACCTAAATTGGCCCCTGGAATGGGTGAGGCCACAGGAGATAGCCGGGGGGCAACAGCAGCTAACTGTGACTCTGAGGATGACGATACCACCACTCTTTGCTTGCAAGCTCGCAGGCCCAAGCAGCGGCACGCTTCGGCGGAGGGCATCCTGAGCAGCAAGCAACAGGGGCCTTGGAAAGTACACACTCAGATTGACTACATACACTGCTTGGTTCCAGATCTGCTACAGATCACAGCACTTCCCTGCTACTGGGGTGTGATGGACCGTTATGAGGCTGAAGCACTGCTGGATGGTCGGCCTGAGGGAACCTTTCTCCTGCGAGACTCGGCTCAAGAAGACTACCTGTTTTCTGTTAGCTTCCGCCGCTATGGCCGTTCGTTGCACGCTCGCATTGAGCAGTGGAATCACAACTTCAGTTTTGATGCACACGACCCTTGCGTGTTCCATGCAGCCACCGTCACGGCACTCTTGGAACACTACAAGGACCCTAGCGCTTGCATGTTCTTTGAGCCATTGCTCACTGTTCCTCTGCACCGGACTTTTCCATTTGGCCTGCAAAGCCTGGCTCGATCAGCCATTTGCGGTGGGGTCACCTACGATGGCATCGGGGCACTGCCACTGCCCCCTGCTCTGCAGGACTACCTCAGGGAGTATCATTATAAGCAGAGGGTCCGCGTACGCTGGCTTGAGAGAGAACCAGTCAAGGCCAAGTGAGGCAGGGCAGATACTTCTCAGCTCTCCAACAGGAGTAGTCCATTCAGCACTTTGCAGAGGTGGaggaattagttttttttggggtgggggGATGTTCAGGGTTGAAAGGAGGGACCTGAAACTGAACACTATATAAGCTCCtatcatttttttatcactcttaacaaacaaaagaaattacATATACAGTGGCTCTCCAGTGTGCACATTTCATTACAGCTTCTGGAATAGAAAGCAGCAGCCGAGGTCTCATTTTCCCTTCTCCCTCAGTTTCCATGGCTATGGGGGAATCTGCAGATACAGATATTTTCATACCCCTCCACTCTTTCACTGCTTGACTTTGTGGTTTATAGccatttcactttatttttgttgtacCGTTTACCTGCTCTCAAATCCCTTACGttaaatatgcattgttaaTGTTCAAAGTAACATTGCGGACAAATTTTGAGAGAAGGGGAAATGAAGGGTGATGTTCAAATATTGCTTTCCCAGCTTCTTTCATCATCCTTAGCTTTTATGGTGCTCTGTCAGTGGTTCCTATGGTAACATTCTGCGCTCATTCCGTTGTTAAAGGAGGAGGCATTCTAGAGCAGGACATAGAAAGGCTTTCATCCTGCTCATAGAGAACGAGACGAAGAAATCATGAAAGATGGATTGACTTTAAACTATGTGTCCAGACAGCTTTTGGGAATGCGTTGCAGTGGAGAGAAGGGTTCTATGGCATTCTGCTTCCAGGAAGCGATAAGATGTGCACAACGTGGCACGGTGTGATGTGAGAGTGCtcggttttcaaaaaacatagtTACTCACACTCTGCGTTCTGTTGCTGTCAATGTTTTGTAATCATTAATTCCTACCACTAATTGCACAGGGGGGTGACTAATTCTGTATCGtcttttttgtattgatttgaATGGTCTATCAGTGCCCTGGAGGTTGGGCGCTGGTTGAGAGcactttaactttaactgtGCTTATGTTAGTGGGTGAAGCAAAGGCAATACATTAACCTGCTACACTGGGACCATTGCTTTTAGACATAAACACCCTCCTATATAGGAATAAA

Function

NR:

description
PREDICTED: suppressor of cytokine signaling 5-like isoform X1

GO:

id name namespace
GO:0035556 intracellular signal transduction biological_process
GO:0016567 protein ubiquitination biological_process

KEGG:

id description
K04698 SOCS5; suppressor of cytokine signaling 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253847.1 True 3055 mRNA 0.50 2 10985042 10995906
XM_043253848.1 False 2834 mRNA 0.50 2 10985042 10995907
XM_043253850.1 False 2787 mRNA 0.49 2 10985042 10996581

Neighbor

gene id symbol gene type direction distance location
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding downstream 47029 10931862 ~ 10938013 (-)
fbxo11b fbxo11b,fbxo11,LOC107728720,LOC107582786,LOC107550041,LOC107673644,LOC107698831,LOC108430631 coding downstream 53885 10918779 ~ 10931157 (-)
foxn2b LOC107698833,LOC107749364,LOC107550040,LOC107582787,LOC107728721,LOC107673647 coding downstream 69158 10900253 ~ 10915884 (-)
chac2 chac2,LOC107749368,LOC107686371 coding downstream 371540 10610648 ~ 10613502 (-)
LOC122355804 nrg3b,LOC107566665,LOC107573948,LOC107678479,LOC107689960 coding downstream 840313 10138438 ~ 10144729 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding upstream 15891 11012472 ~ 11027430 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding upstream 53098 11049679 ~ 11054806 (-)
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding upstream 85624 11082205 ~ 11084036 (-)
zfp36l2 zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775 coding upstream 122837 11119418 ~ 11122838 (-)
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding upstream 220711 11217292 ~ 11219552 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 88895 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 90325 10868848 ~ 10894717 (-)
G87376 NA non-coding downstream 120446 10816561 ~ 10864596 (-)
G87388 NA non-coding downstream 180304 10793063 ~ 10804738 (-)
G87164 NA non-coding downstream 379023 10605232 ~ 10606019 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding upstream 74668 11071249 ~ 11071765 (-)
G87449 NA non-coding upstream 112315 11108896 ~ 11165039 (-)
G87450 NA non-coding upstream 127866 11124447 ~ 11126279 (-)
G87409 NA non-coding upstream 262436 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 275160 11271741 ~ 11273302 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1045193 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1495730 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2106911 8875617 ~ 8878131 (-)
trnar-ccu_66 NA other downstream 2297472 8687498 ~ 8687570 (-)
plbd1b LOC107578697 other downstream 2297494 8682443 ~ 8687548 (-)
cript cript,LOC107582781,LOC107728714 other upstream 8425 11005006 ~ 11006954 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other upstream 46307 11042888 ~ 11045889 (-)
G87489 NA other upstream 324842 11321423 ~ 11322603 (-)
G87569 NA other upstream 836298 11832879 ~ 11835612 (-)
G87608 NA other upstream 951959 11948540 ~ 11951155 (-)

Expression


Co-expression Network