zgc:171971 (zgc:171971,LOC107695535,LOC107596590)


Basic Information

Item Value
gene id zgc:171971
gene name zgc:171971,LOC107695535,LOC107596590
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 1652449 ~ 1658747 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253882.1
CATTTGCCTCGTCATCCCATGCATTTCCTAATCCGCCGGTGCAAACGACGTATTAAAGGCTTTGTTTTGATAGCTTAGGCTGCTAACAAAATGGAGGCGCGCGCTTCTTGAACCGTGATCTCGGATGTCTGAACATGGAGATGGGGATGCAGAAGCGAGCTCATCCGCCACTCTCAGACCATCTTTTGCTCTGGGGAGAGCGCTGCCCGGCCGAATATCTCTGAATCCTCCTCCGCCAGGCAGACTGACCTCTCTGCGCTCCAGAGACCTGACTCTGGGAGGATATAAAAAGAAAACCTTTGTACCAAATGTTCACTCTGTTCGCAAAACTAAAGATGAGTTACAGGAGGAGATGCACACTGCGccgaagaaagagagaagagagagggaagacagacaaagagagagacgcCGACGAGAAAAACCTCAGACCATTCAGTCTCACTCCATCTTTGAGCAGGGTCCAGCGGACACCTACAGGAAGCTGGGTAATTGGAGCGGCTCAAACCTGAGCGACTGCGATCCCGCACTCgtgacaaaatgcattaaaaaggaaaagaacaacATCGAGGATGACGATAATGAAATTTTACAAAAACTCCAACGAGACGACTTTTTGGACGATCCCGGATTAAAAAATGATCCCAAGCAACGACCAATCAGACTCCCGCTCTATCAGTCATGCAACTTTTTGTCAACGGATGCAGCGAGTTCGTTTAAAGAGGACACGGCGTCTGATAATGCTCTGAAAGTAGCCAAAGCCGAGCAGAAATACCCTGTGCCAGCGAGGGGCGCGTCTGCATGTCCGCAGCAGCCAACGGTCGGAGAACTTTTCCAACGGCTGAGCGTTTCGGATAAGGAAGAACTGCTGTTTATTCAACTTCCCGATACCATACCTGGTCAACCCAAAACCTTGAGCCCAGAGAAACCCAGAAAGGAAGGCAAGACTGAAGATAAGCGTTCGTCACAAATTAAAGCTCTGGATCTGCCCGAGAAAGCCCCTGTACCTATGCTGTCAGACTTCTCTGAGGGTCTGATTGGAAAATTGCAAATCAGAAAGTCTGGTAAAGTCCAGCTGGTCATGGGAAACGTTACATTAGATGTCTCAGAGGGAGCCGCCTTCTCTTTCCTACAGCAACTGGTGTGTGTGCGGATGTCGGAGGGCCTGACCGGAGACATGACTGTGCTCGGAAACATCACACACAAACTGGTGTGTTCACCCGATTTTGAGACTTTGCTGCAAGAAGCCAAACTGTCATCTGACCCCGGCTCGGCTTCAAAGTCCTGATTTTATCCCACTAGAATATATcgttatatttaagtttttttttatttttatgtaaacattttaaacgtGAAGTTAACGCCCTGTAGTTGACAATTGCATTATAAGATCATATTCTAATAGAGACAActtgatttgtatttaaagaGAGAGTCCATCTAAAAATGCaattgtcatttactcactctacGTGTTAtaagaaaaaagttttgaaaaaaaaaaaaatatcataacaTTTTTCCTCCATAGAATGTAACTATCTGTAATTCGGCACAGTTTACGGAAAAGAGCAGCTCggacattctttaaaatacctGAATTTGTTTTACACAGAATGAAGAAAGCCGGTTTTGGAGAGGTTaagtaaagtattttaaaaatgtaaatcttttgtaaatagCTCCTGTTGCTTTTATAGAAAATGTTCGTGTTTATTTTGTAAGTAAAGACATTGTACAAAA
>XM_043253884.1
CTCGTGATGCTTCTGCAAGGATGTAGCTGTCAGCTGGAGGAGTTTAACAGACATGGCTTAAGGTGTTTGCACCGGTTTCAAGATGTCTGAACATGGAGATGGGGATGCAGAAGCGAGCTCATCCGCCACTCTCAGACCATCTTTTGCTCTGGGGAGAGCGCTGCCCGGCCGAATATCTCTGAATCCTCCTCCGCCAGGCAGACTGACCTCTCTGCGCTCCAGAGACCTGACTCTGGGAGGATATAAAAAGAAAACCTTTGTACCAAATGTTCACTCTGTTCGCAAAACTAAAGATGAGTTACAGGAGGAGATGCACACTGCGccgaagaaagagagaagagagagggaagacagacaaagagagagacgcCGACGAGAAAAACCTCAGACCATTCAGTCTCACTCCATCTTTGAGCAGGGTCCAGCGGACACCTACAGGAAGCTGGGTAATTGGAGCGGCTCAAACCTGAGCGACTGCGATCCCGCACTCgtgacaaaatgcattaaaaaggaaaagaacaacATCGAGGATGACGATAATGAAATTTTACAAAAACTCCAACGAGACGACTTTTTGGACGATCCCGGATTAAAAAATGATCCCAAGCAACGACCAATCAGACTCCCGCTCTATCAGTCATGCAACTTTTTGTCAACGGATGCAGCGAGTTCGTTTAAAGAGGACACGGCGTCTGATAATGCTCTGAAAGTAGCCAAAGCCGAGCAGAAATACCCTGTGCCAGCGAGGGGCGCGTCTGCATGTCCGCAGCAGCCAACGGTCGGAGAACTTTTCCAACGGCTGAGCGTTTCGGATAAGGAAGAACTGCTGTTTATTCAACTTCCCGATACCATACCTGGTCAACCCAAAACCTTGAGCCCAGAGAAACCCAGAAAGGAAGGCAAGACTGAAGATAAGCGTTCGTCACAAATTAAAGCTCTGGATCTGCCCGAGAAAGCCCCTGTACCTATGCTGTCAGACTTCTCTGAGGGTCTGATTGGAAAATTGCAAATCAGAAAGTCTGGTAAAGTCCAGCTGGTCATGGGAAACGTTACATTAGATGTCTCAGAGGGAGCCGCCTTCTCTTTCCTACAGCAACTGGTGTGTGTGCGGATGTCGGAGGGCCTGACCGGAGACATGACTGTGCTCGGAAACATCACACACAAACTGGTGTGTTCACCCGATTTTGAGACTTTGCTGCAAGAAGCCAAACTGTCATCTGACCCCGGCTCGGCTTCAAAGTCCTGATTTTATCCCACTAGAATATATcgttatatttaagtttttttttatttttatgtaaacattttaaacgtGAAGTTAACGCCCTGTAGTTGACAATTGCATTATAAGATCATATTCTAATAGAGACAActtgatttgtatttaaagaGAGAGTCCATCTAAAAATGCaattgtcatttactcactctacGTGTTAtaagaaaaaagttttgaaaaaaaaaaaaatatcataacaTTTTTCCTCCATAGAATGTAACTATCTGTAATTCGGCACAGTTTACGGAAAAGAGCAGCTCggacattctttaaaatacctGAATTTGTTTTACACAGAATGAAGAAAGCCGGTTTTGGAGAGGTTaagtaaagtattttaaaaatgtaaatcttttgtaaatagCTCCTGTTGCTTTTATAGAAAATGTTCGTGTTTATTTTGTAAGTAAAGACATTGTACAAAA
>XM_043253885.1
GAGCGCTGCCCGGCCGAATATCTCTGAATCCTCCTCCGCCAGGCAGACTGACCTCTCTGCGCTCCAGAGACCTGACTCTGGGAGGATATAAAAAGAAAACCTTTGTACCAAATGTTCACTCTGTTCGCAAAACTAAAGATGAGAGGAGATGCACACTGCGccgaagaaagagagaagagagagggaagacagacaaagagagagacgcCGACGAGAAAAACCTCAGACCATTCAGTCTCACTCCATCTTTGAGCAGGGTCCAGCGGACACCTACAGGAAGCTGGGTAATTGGAGCGGCTCAAACCTGAGCGACTGCGATCCCGCACTCgtgacaaaatgcattaaaaaggaaaagaacaacATCGAGGATGACGATAATGAAATTTTACAAAAACTCCAACGAGACGACTTTTTGGACGATCCCGGATTAAAAAATGATCCCAAGCAACGACCAATCAGACTCCCGCTCTATCAGTCATGCAACTTTTTGTCAACGGATGCAGCGAGTTCGTTTAAAGAGGACACGGCGTCTGATAATGCTCTGAAAGTAGCCAAAGCCGAGCAGAAATACCCTGTGCCAGCGAGGGGCGCGTCTGCATGTCCGCAGCAGCCAACGGTCGGAGAACTTTTCCAACGGCTGAGCGTTTCGGATAAGGAAGAACTGCTGTTTATTCAACTTCCCGATACCATACCTGGTCAACCCAAAACCTTGAGCCCAGAGAAACCCAGAAAGGAAGGCAAGACTGAAGATAAGCGTTCGTCACAAATTAAAGCTCTGGATCTGCCCGAGAAAGCCCCTGTACCTATGCTGTCAGACTTCTCTGAGGGTCTGATTGGAAAATTGCAAATCAGAAAGTCTGGTAAAGTCCAGCTGGTCATGGGAAACGTTACATTAGATGTCTCAGAGGGAGCCGCCTTCTCTTTCCTACAGCAACTGGTGTGTGTGCGGATGTCGGAGGGCCTGACCGGAGACATGACTGTGCTCGGAAACATCACACACAAACTGGTGTGTTCACCCGATTTTGAGACTTTGCTGCAAGAAGCCAAACTGTCATCTGACCCCGGCTCGGCTTCAAAGTCCTGATTTTATCCCACTAGAATATATcgttatatttaagtttttttttatttttatgtaaacattttaaacgtGAAGTTAACGCCCTGTAGTTGACAATTGCATTATAAGATCATATTCTAATAGAGACAActtgatttgtatttaaagaGAGAGTCCATCTAAAAATGCaattgtcatttactcactctacGTGTTAtaagaaaaaagttttgaaaaaaaaaaaaatatcataacaTTTTTCCTCCATAGAATGTAACTATCTGTAATTCGGCACAGTTTACGGAAAAGAGCAGCTCggacattctttaaaatacctGAATTTGTTTTACACAGAATGAAGAAAGCCGGTTTTGGAGAGGTTaagtaaagtattttaaaaatgtaaatcttttgtaaatagCTCCTGTTGCTTTTATAGAAAATGTTCGTGTTTATTTTGTAAGTAAAGACATTGTACAAAA

Function

symbol description
zgc:171971 Predicted to enable DNA binding activity and DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription by RNA polymerase III. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex.

NR:

description
PREDICTED: DNA-directed RNA polymerase III subunit RPC4-like

GO:

id name namespace
GO:0006383 transcription by RNA polymerase III biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0003899 DNA-directed 5'-3' RNA polymerase activity molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253882.1 True 1746 mRNA 0.44 9 1652449 1658621
XM_043253884.1 False 1704 mRNA 0.44 9 1652449 1658747
XM_043253885.1 False 1542 mRNA 0.43 8 1652449 1658283

Neighbor

gene id symbol gene type direction distance location
ube2d1b ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC106607701,LOC107553913,LOC107733527 coding downstream 3687 1642834 ~ 1648762 (-)
ipmkb ipmk,ipmkb,LOC107746459,LOC107654052,LOC107708928,LOC107695532 coding downstream 10452 1628163 ~ 1641997 (-)
pcdh15b pcdh15b,pcdh15,LOC107654051,LOC107695531,LOC106578947,LOC106589399 coding downstream 278365 1217427 ~ 1374084 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding downstream 596015 1045416 ~ 1056434 (-)
aarsd1 aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654 coding downstream 635219 1009987 ~ 1017230 (-)
fam13c fam13c,LOC107654055,LOC107727053,LOC107596592,LOC107695537,LOC107746461 coding upstream 103051 1761798 ~ 1774365 (-)
slc16a9b slc16a9b,slc16a9,LOC107654057,LOC107596608,LOC107727058,LOC107695515,LOC107746460 coding upstream 131262 1790009 ~ 1796994 (-)
ccdc6b ccdc6b,ccdc6,LOC107695538,LOC107654058,LOC107746455,LOC107727062 coding upstream 139311 1798058 ~ 1813172 (-)
tmem26b tmem26,tmem26b,LOC107695511,LOC107745662 coding upstream 316023 1974770 ~ 1977715 (-)
egr2b egr2b,LOC107739063,LOC107653961,LOC107745678,LOC107596614,LOC107593522,LOC107596611 coding upstream 482623 2141370 ~ 2143777 (-)
G84892 NA non-coding downstream 2315 1649461 ~ 1650134 (-)
G84884 NA non-coding downstream 24413 1626295 ~ 1628036 (-)
G84885 NA non-coding downstream 47650 1599857 ~ 1604799 (-)
G84882 NA non-coding downstream 66499 1585749 ~ 1585950 (-)
LOC122355293 NA non-coding downstream 105955 1545553 ~ 1546494 (-)
LOC122355537 NA non-coding upstream 51751 1710498 ~ 1737269 (-)
G84909 NA non-coding upstream 68359 1727106 ~ 1729422 (-)
G84919 NA non-coding upstream 92655 1751402 ~ 1754571 (-)
G84928 rhobtb1,LOC107654062,LOC107727061,LOC107745661,LOC107695540 non-coding upstream 306239 1964986 ~ 1969050 (-)
G84956 NA non-coding upstream 342587 2001334 ~ 2001636 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 754932 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 1100006 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 1152230 496964 ~ 500219 (-)
LOC122355759 NA other downstream 1162070 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 1291967 340273 ~ 360482 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 155336 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 515241 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 1109161 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 1430882 3089629 ~ 3103315 (-)
G85366 NA other upstream 1599784 3258531 ~ 3299688 (-)

Expression


Co-expression Network