acta2 (acta2,LOC107683715,LOC106531354)


Basic Information

Item Value
gene id acta2
gene name acta2,LOC107683715,LOC106531354
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7630560 ~ 7636148 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253898.1
GGAGTGAGGCTACCGATATGAGTGCAGCCCAGGCTCCTTGTTTGGGATGTAGGAGGGTGCGGTGAGCAGGGATGGGAACTACATAAGTACACCACAAGCCAGTGAGTGGTACACCATCACCAAGTGGCTAAATTCCCCCCCGGCCCAGCACTGTCAGGTGATTGTCTCCTGTAGGAGTAAGGAAGGAAATCTGAGCTGAAAATGTGTGACGACGAGGAAAGCACTGCCCTTGTGTGTGACAATGGATCAGGACTGTGTAAGGCAGGCTTCGCCGGGGATGATGCTCCGAGAGCAGTGTTCCCCTCCATAGTGGGTCGTCCAAGACACCAGgGAGTGATGGTGGGAATGGGGCAGAAAGATAGTTACGTAGGCGATGAGGCGCAAAGCAAAAGGGGAATCCTGACCCTCAAGTACCCTATCGAGCACGGCATCATCACAAACTGGGACGACATGGAAAAAATCTGGCATCACTCTTTCTACAATGAGCTCCGTGTGGCTCCTGAGGAGCACCCCACTCTACTGACAGAAGCCCCTCTCAATCCCAAAGCCAACAGGGAAAAGATGACCCAGATCATGTTTGAGACCTTCAATGTTCCAGCCATGTATGTAGCTATCCAAGCGGTGCTGTCCCTCTATGCTTCCGGTCGTACAACAGGCATTGTCCTTGACTCTGGTGATGGTGTCACCCACAATGTGCCCATTTACGAGGGCTACGCTCTTCCGCATGCCATTATGCGTTTGGACTTGGCCGGCCGTGATCTCACTGACTACCTCATGAAGATCCTAACCGAAAGAGGCTACTCATTTGTCACCACTGCTGAAAGAGAAATTGTCAGAGACATCAAAGAGAAGTTGTGTTATGTGGCGCTGGATTTTGAGAATGAGATGGCCACTGCAGCCTCTTCCTCCTCCCTGGAGAAGAGCTATGAGCTTCCTGATGGACAGGTCATCACCATTGGCAATGAGAGGTTCCGCTGCCCTGAGACACTCTTCCAGCCATCCTTCATCGGAATGGAATCTGCTGGCATCCACGAAACCACTTACAACAGCATCATGAAATGCGACATTGACATCCGTAAGGACCTTTACGCCAACAATGTGTTGTCTGGTGGTACCACCATGTACCCTGGCATTGCCGACAGGATGCAGAAGGAGATCACTGCTTTGGCCCCCAGCACCATGAAGATCAAGATCATCGCCCCACCTGAGCGCAAGTACTCAGTATGGATTGGTGGCTCCATCCTGGCCTCCCTCTCCACCTTCCAGCAGATGTGGATAAGCAAGCAGGAGTATGACGAGGCCGGGCCATCCATTGTGCATCGCAAGTGCTTCTAAAGACACCTCCAACTCCCTCCTGCTCCCCTAATTCTGTTATTGCTTCATAGCCTGTAAACTGTGAACGTACCCTTTACTTCCCTCTattgttttgtctttgcactgccCACATCTGTTTGAATGTTCTGATTTAATTATGTCATGACATTATAGTGTTGTTCCCAATGGGCTAAAAAGCTTGATTGTGCTGCCAATATGAAAGATTTGGGAGATTCCTTGAGGTAGTGAGAATCCAGAGATGAGGAGAGGGTGTTGAGGAACAGGGCTCATTCTCCCCTTTGTGTTAAATTGCTACGAGGTAACACAACTGCATGTCGGCTTTCAGGCAGTCTGTATGGATATCATATGATAACTCCATGAAGGAATAAAGCTCTGCAATAATAA

Function

symbol description
acta2 Acts upstream of or within heart contraction. Predicted to be located in several cellular components, including cell body; filopodium; and lamellipodium. Predicted to be part of dynactin complex. Is expressed in several structures, including cardiovascular system; gut; mesoderm; musculature system; and swim bladder. Human ortholog(s) of this gene implicated in Moyamoya disease; megacystis-microcolon-intestinal hypoperistalsis syndrome; and thoracic aortic aneurysm. Orthologous to several human genes including ACTA2 (actin alpha 2, smooth muscle).

NR:

description
PREDICTED: actin, aortic smooth muscle

GO:

id name namespace
GO:0045471 response to ethanol biological_process
GO:0055003 cardiac myofibril assembly biological_process
GO:0055008 cardiac muscle tissue morphogenesis biological_process
GO:0043066 negative regulation of apoptotic process biological_process
GO:0042493 response to drug biological_process
GO:0030240 skeletal muscle thin filament assembly biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0030049 muscle filament sliding biological_process
GO:0060048 cardiac muscle contraction biological_process
GO:0005829 cytosol cellular_component
GO:0070062 extracellular exosome cellular_component
GO:0031674 I band cellular_component
GO:0042643 obsolete actomyosin, actin portion cellular_component
GO:0017022 myosin binding molecular_function
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K12313 ACTA2; actin, aortic smooth muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253898.1 True 1719 mRNA 0.50 9 7630560 7636148

Neighbor

gene id symbol gene type direction distance location
ch25h ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 coding upstream 13547 7615839 ~ 7617013 (+)
slc16a12b slc16a12b,LOC107753457,LOC107669179,LOC107584144,LOC107758438,LOC108413683 coding upstream 26006 7597840 ~ 7604554 (+)
pank1b pank1b,LOC107753437,LOC107669213,LOC107683711,LOC107758439,LOC107594157,LOC108413682 coding upstream 33556 7588301 ~ 7597004 (+)
kif20bb kif20bb,LOC107669226,LOC107753438,LOC107584147 coding upstream 64389 7555013 ~ 7566171 (+)
ankrd1b ankrd1b,LOC107584237,LOC107669173,LOC107753461 coding upstream 78066 7549004 ~ 7552494 (+)
ankrd22 ankrd22,LOC107753431,LOC107758445,LOC107584139,LOC107594161 coding downstream 12033 7648181 ~ 7651744 (+)
rnls rnls,LOC107669231,LOC107584138,LOC107680274,LOC107594162 coding downstream 26958 7663106 ~ 7696729 (+)
atad1b atad1,atad1b,LOC107680273,LOC107669218 coding downstream 106687 7742835 ~ 7747786 (+)
cyth3a cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600 coding downstream 126841 7762989 ~ 7777555 (+)
pms2 pms2,LOC107753423,LOC107594169,LOC107724702 coding downstream 160112 7796260 ~ 7802299 (+)
G86219 NA non-coding upstream 126061 7502578 ~ 7504499 (+)
G86202 NA non-coding upstream 241579 7387668 ~ 7388981 (+)
LOC122355189 NA non-coding upstream 310969 7317500 ~ 7319591 (+)
G86141 NA non-coding upstream 332526 7297683 ~ 7298034 (+)
G86140 NA non-coding upstream 333017 7297318 ~ 7297543 (+)
G86275 NA non-coding downstream 65195 7701343 ~ 7701799 (+)
G86283 NA non-coding downstream 82836 7718984 ~ 7719283 (+)
G86268 NA non-coding downstream 84244 7720392 ~ 7723861 (+)
G86374 NA non-coding downstream 210410 7846558 ~ 7846862 (+)
G86460 NA non-coding downstream 420783 8056931 ~ 8060176 (+)
G86143 NA other upstream 322331 7307924 ~ 7308229 (+)
G86142 NA other upstream 325712 7303138 ~ 7304848 (+)
G86029 NA other upstream 1107989 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1189034 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1413993 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 179675 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 469000 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 559816 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1200300 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1649515 9285663 ~ 9306831 (+)

Expression


Co-expression Network