synpo2lb (synpo2lb,LOC107706876,LOC107727319,LOC107700134,LOC107582764,LOC107552728,LOC107698791)


Basic Information

Item Value
gene id synpo2lb
gene name synpo2lb,LOC107706876,LOC107727319,LOC107700134,LOC107582764,LOC107552728,LOC107698791
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11536670 ~ 11550425 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253908.1
CTCTTGGCCCACGGGGTGTGTGTCTGCGCTCACCTCTCACGACCGACAGAAGCTCTGCAGGCAGACTGGGCCACGGAGGACTGAACATCCAGGGATGGGACGAGACTATTGAAAGAAACCTAAGAACCAAGAAACATTAACGAGagacaactaaataaaaatggtcGCAGAGGAGGTAGTGGTGACCCTGTCAGGAGGTGCACCGTGGGGTTTCCGATTACAAGGAGGAGCTGAGCACCAGAAACCCCTTCAAGTGGCAAAGGTGAGAAAGCGCAGCAAGGCCTGCCGGGCTGGGCTCAGAGAGACTGATGAGTTGGTGTCAATCAATGATGAATCCTGTGGAACGCTATCCCATGCTGAGGCTATGAATCTGATTGATAGTGGCAGAGGAACCCTCCATCTGCGAATTAAAAGGGCCCCAGCTGCATATCAGTCAGTGGTGCTTCTGGGTCGGGCCCCTTCCCCGCGTATTGATAAGGAGTATCAAGCAGCCTTGAGAGCCCTGTCGCCTCCACTTACCTCTAAACGATCGGGTGTCAACAGAGCATCGCTCCTGTCCCCCACTGGCGGCCTTGAGTGGCTTACGTCCCCTCCAGACAGCGAGGCTTACTACGGTGAGACAGACAGTGACGCAGATGTGGCGGCACAAGAGAAGCAGCGTAGACAGAGACGACGAAGCCCCAGCACCTCTCCTGCCAAGAGCCCCGGCCAAGCCTCACCCCAAGAGGAGGAGACTTCAGAAATGAGCGGCTATGAGAGCGCCCTGGATGTCTGCATGTACCCTCAAACACAGAGCTGGCCTGTATCTGATCTAGAGGGAATGGGGACTCAGCAACAGTGCCTTATGTCTGGGGTGGCCCGCAGAGAGGTGGTCTACCAGCCCCCGCAGGCTGAATGGTCGCACCAGGCTGAAAATTCCTCTGAAAATTCTGACCAAAGTCCAACAGGAGCTGCTGAAGTGGACAGTGGCTTCCAGGAGCCCCCCACTGTCCCACCTCCACTTGTTTCTCCAGAGCGGGCAAAAGAGGCTCTCATGCTTGCGTCTCACAGACAGATGGTGCCTATGGTGGGCCCTGTGGACAACCCAATCGATGAAGAACTCACTGTGACGTACATGGACAAGGCCAAGCAAGCTAAGCTACACAGAGGTGAGAGTGTACAAGATAAGCAGGTGAAGGAGGCCCGATCCAAATGCAGAACCATTGCTTCGCTCTTGACAGATGCTCCTAACCCTCATTCTAAAGGTGTGCTTATGTTCAAGAAGCGACGGCAGCGTGCAAAGAAGTATACTCTCACCTGCTTCGGCAGTGTAGACGGAGAAAGCTATAGTAATACAGAGGGAGAAACCGAGGACGAAAGCCTGTTTCCTGGGAGTGAATCTGAGCTTGACGAGGACGGTTTTTCTGCTGCGCCAGACCCTACCTGGGATAGTGGTTACCTGGACGTTCTAGACAAGCGAACTTCAGCATGTGTTGTGTCTGACAGAGATGCAGAGATTAGCCCAGGCCTAAATGCCACTTCAGGAAAAGGAGCTCAGCTTTTTGAACAACAGAGGAAAAGAGCAGAAGAGCATATGTCAAATCTGGTTACGCCCACAGCTTTTTCCATGCCACAGCATCAGGGAGACTCAACCCTGACATATAGCCCAGTTACTCCAGTCACACCCATAACGTCTCATAGCACCGGTATGGTAAACGGTGAGCCTTTGGTAGTGAGCAGGACAAGTGTTGTGTTGACCTCACCAGGCCAGACGCCTATGCCATCCATGGCAGGAGCATTACCAGAGCAAGCAGATTCATCGGCTGCCAGCTCAGTGCACAACAGAACTGCCAGGCCATTTGCCCCTGGCTGTGTGAGCCACCGAGCATCAACTGCTCCAGTAGTCTTCAGGCCCAGCCCTGCCAAAAAGGCTGGATCACAGGCTCAGGCTGTGTCTGTGGCAAATATCCCAGCTTCCTTCTCTCCTGCTGGCTCAGAGGGAAAGAAAGCTATTTCTACAACATCACTGTATATCCCTGCTAGACCGGCCACCTACAATGGTCCTTCCTCCTTGCTCTCTCCATCCTCAGTCACTTCAGGTCCATTTTCTCATCCCCCCTCAAATGCTCCACTCTACTCTCCAACTTATTCCAGCACCTCAGCACCTTTTTCTCCAACATCTTCTCATGTAACATCTTTGAGTTCCCCTTCTGGTATGCCTCAGCCTTACTCTCCTCCTCAAACACATGCAATGCCACTCAGTCCTCCATACCATCATGCAGTTTCTTCTCAATATCAGCCACCTCCACCAGTTCATATGCCAACACAGCCTTTCTCTCCCCCGCTCACAAATGCCCCAGGTTTTCCCAATGCACCTGCTCCCGCCCATGCCTTTGCTCCCTCAGCACCAAATGTGCAATCCTCCCCAGCACACAAAGTATCCTTCAACCCATACATCTCTGTGGCATCCACTACTCCAGAAACACCAAATGCACCAGTCGCCCAGCAGTATTCTCTTACTAACTCCACTGATGGTACATCTTCTCGAGAGCAGCGGGTCTCAGTCCCTGCTGGCCGCACTGGTATCCTGCAGGATGCTCATCGTCGTGGATCCAAGAAACCAATGTTCACTGCTAAAGAGGAGAAGACGGCTCCATCTTACAACCCTGAGCTACTGTCTCTAGTGCAGAACTTGGATGACAGGTCCCGTTCGGGTCCAGAGGCTGGGATTGAGTCTGGCCCTGAAGAAGACTTTCTCAATCTAGGTGCAGAAGCTTGCAACTTCATGCAAGCACAAAGATACAAGATGCCACCACCAGTGGCTCCTAAACCGCCGCATCAAGCTCCTGAGATGCCCCAGATGCAAGGTAAAGGTGCAGAGCTGTTTGCACGCAGACAGAGTCGCATGGACCGATACGTGGTGGATAAACAGCCCAAATCTCCAGCGCATCTTCGTGATCCTTCTCCTACACCCTCCCTCCCAGCTCACTGGAAATACTCTCCAAACATCCGAGCCCCACCACCCATTAATTATAATCCACTGCTGTCACCTTCTTGCCCTCCAGTGGCCCAGCGTGGCACCAAAGCTAATGATGCAACTAAAGTTGGGGTTAAAACAGTGCCTGGCCAACACAAACAAGGTATAAAGGCTCTTGACTTTGTGAGCAGGCAGCCATACCAGCTCAACTcatctttgttcatttatggAGGTGGAGTCACTCAAAACACTGCCACTTATCAGCAGCAACAGAATGGTGTTGCCATGACAGGTAATTCTCTTAACTTACCGAAGCAGGTCCCTGTTAAAGCAAGCCGTGTGTATGAAATCAAACGGTTTTCCACACCTACTCCCATGTCTGCACCTACATCTCTGACACCTACTGTAATCGCCCCTCGCTCTGCCACAACTCTCGGTGAGCCGATGTGGCGCAATGATGTCACTTCCCCTCCTCCTGTTGCTCCGAGACCTGCAGCGCCATTCTCGCCACCACCTCCTGCCCCGACAGCAGCCCTGCCAGCTCTCCCCAAAATATCTACTGCCCCTGTGCCCAATTTAGTGCACATCCCACAACCCACTCCTGGGCAGGACTATACCCCATTTCAAGCAGCCAAGCAGTTTAAGAGCGCCCCTGAGCTGAGTCCCCTGTCTGCTGGTGTGCGATCCTCAGGGTCTGGGAGCAGCCAGAACCTACGGGTACCCAGACCCCGCTTTAGTACATCCAGCATGGGTCTGCAACCAAATGTGTGGAGGCCTGGCTCCATACATTACTGAGAGTCCACTGTGACAGTAATTACCACCCTGGGCAAGAGCACAAGAGTGTTTGAGCTCTAAATGAATTgttaatatgacaaaaaaaaaaaaaaaaaaacatcagtcaaagatgttttttttttgcatgttcatAATTTTCAATCACTCTAcaccattattttaaaaaatagagcATGCAGCAACATCATAGATACCTGCatctatatatgtattattcagtttttattcgAATTTAGAGATATTTATGTAGTATCCAAACAATTTTGATACATATTTCTAGTTAAATTcttattcagtttatttcataCCTAATGAACATGTTTAATCCACAGACAGAATTGCAAAGTCACTACTTGTGACCGCAACCAAATCAAAAAATGGCATTAATGTCTAATAACAATCATTTTTGACATTATGTGATGATGGCGTGAGAAAGATAAGTGATAATTGATTGTGTACATATTTTTTCACTTGGGGCCACAAGGATGGAGTGATAAAGGGTAAGTAAACGATATACATTACAGAATCAAGCTGTGACAGAAGATACGTGTAGGATTTGTGTAAAAGTGGTATAGAATGTTCTAAGACATGTATTTGCCCCGAGTTTTATCAAAGTCTCAGTGACAGAGCGAGgaaagaagtgtacaaagtaaGTGACATTggcttgaaatgaaaaaaattgaaaaatccTCAAGTGGAGAGATGGTACAAACCACCCTTGCTCTACTATAGCTCTTGAATTGTTATCTCTTCTGGCCTCTGCCATGCCCTTTGCTTCTGATTTTATCCATCCTTTATCTCTCTAAACATCTCTTGAGGTtggactgcaggcctgtgtttgtcTAGAGCATTGCACAAAAGCCTTTTGCTTCTTGTTTGACGAGGATCAGTATGGATGCTTGATGCATGTGCTCATTTTACCCTAGTAATGCTGCGTATGCCAAGGTTTTGACTGAGCATTTAGAAAGGCATGTGAACTCCACTGGGGGGAATTGTACTGGGGCTTTTTCATATGACAGCTGAAAAAATACACTAGATGACAAATTCTGAAAGCGCTGCTTTATCTTTATGACATATTATGCGAATGTGACATCTGACCACTTTTCTTGGTGCTTGCTCTCATTGTGAATGATGCTTTTGCCAAACAGGTATGACATTCATTTCAATCACTTGTTAGAGCTGTTCAACTGCATTTGTGAAATTGTACATGCCTAGTTGAACTTTTCTTGCATCGCTTTTTATGAGAAAATACCCAATGGCCCTGATGGTATGAAATAACACGAAATAGTGGGTACCATTTCTCTACTAAGGATAAGAAGGTTGATCGGACGTAAAGCTATAATGTACCTTGTTGTCAAGCAGAAAGTGGGAGGTATGGATATGGGAGGTATGATGCAAgataaaactgatataaaatttaaaagcaagaaTAGAGAGAAAGTGgctttttttacttattttttgtgGAGGGGGGGGGTGGGGGGGGGGGAGGTGTGGGGGCAATTAGATTAGTCATAcactgaaatatacattttcatgtgTGTTCTAATAggacattttaaagctttaattatttagtaaatgtgttgtgtttgcataaaatattctGAAGACACTGTTATATTCAAACAATTACACTTAGTGCTTTGAGTCATTTGAggtttaaagtgtaatttatgtacaatgcaaataaatgaatgtgcaaaaaaaggaaaataatggATTACTGGATACTTGGGTTCAGGGACTGGGAATATGTGAACGAATTTGTACTGTATGAGTTAATGTAGAGCAGTGAAAATAAATTTAGAATTAACAGCT

Function

symbol description
synpo2lb Predicted to enable actin binding activity. Acts upstream of or within cardiac muscle tissue development and skeletal muscle tissue development. Predicted to be active in Z disc; actin cytoskeleton; and nucleus. Is expressed in adaxial cell; cardiovascular system; musculature system; pectoral fin bud; and somite. Orthologous to human SYNPO2L (synaptopodin 2 like).

NR:

description
PREDICTED: synaptopodin 2-like protein

GO:

id name namespace
GO:0048738 cardiac muscle tissue development biological_process
GO:0007519 skeletal muscle tissue development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253908.1 True 5572 mRNA 0.47 4 11536670 11550425

Neighbor

gene id symbol gene type direction distance location
myoz1b myoz1b,LOC107700112,LOC107706866,LOC107727320,LOC107582765,LOC107552748 coding downstream 1717 11529051 ~ 11534953 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding downstream 8416 11440769 ~ 11528254 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding downstream 116464 11394257 ~ 11420206 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding downstream 144280 11375795 ~ 11392390 (-)
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding downstream 161864 11344459 ~ 11374806 (-)
acsf2 acsf2,LOC107698803,LOC107706880,LOC107552752,LOC107727305,LOC107582759,LOC107675647 coding upstream 32737 11583162 ~ 11601481 (-)
tap2t si:dkey-57h18.2,LOC107582758,LOC107727316,LOC107657063 coding upstream 56599 11607024 ~ 11612294 (-)
slc16a5a slc16a5a,slc16a5,LOC107666920,LOC107669499,LOC107706881,LOC107582757,LOC107736668 coding upstream 62317 11612742 ~ 11621002 (-)
kctd2 kctd2,LOC107666921,LOC107727321,LOC107582756,LOC107669473,LOC108410512 coding upstream 73673 11624098 ~ 11629888 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding upstream 79899 11630324 ~ 11633883 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 217749 11316383 ~ 11318921 (-)
G87417 NA non-coding downstream 220672 11312472 ~ 11315998 (-)
G87409 NA non-coding downstream 238136 11259017 ~ 11298534 (-)
LOC122355534 NA non-coding upstream 28763 11579188 ~ 11580359 (-)
G87547 NA non-coding upstream 202624 11753049 ~ 11790926 (-)
G87551 NA non-coding upstream 248580 11799005 ~ 11799343 (-)
G87552 NA non-coding upstream 249167 11799592 ~ 11800481 (-)
G87593 NA non-coding upstream 340509 11890934 ~ 11894512 (-)
G87489 NA other downstream 214067 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 490781 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 529716 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1596821 9311653 ~ 9939849 (-)
G87569 NA other upstream 282454 11832879 ~ 11835612 (-)
G87608 NA other upstream 398115 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1098958 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1201479 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1873883 13424308 ~ 13432195 (-)

Expression


Co-expression Network