Gene
RNA
| Item | Value |
|---|---|
| gene id | G2294 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000000 |
| NCBI id | null |
| chromosome length | 19091038 |
| location | 4118584 ~ 4119862 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2564 | True | 1164 | lncRNA | 0.41 | 2 | 4118584 | 4119862 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000000_04090995_04093696 | SCOC, SCOCB | coding | upstream | 24839 | 4090547 ~ 4093745 (+) |
| CI01000000_04082293_04087343 | NA | coding | upstream | 30565 | 4082293 ~ 4088019 (+) |
| CI01000000_04076566_04077988 | NA | coding | upstream | 40510 | 4076018 ~ 4078074 (+) |
| CI01000000_04036979_04044427 | SEPT8.L, SEPT8B, SEPT8, SEPT8.S, SEPT8A | coding | upstream | 73814 | 4036979 ~ 4044770 (+) |
| CI01000000_04027941_04033360 | SFXN1 | coding | upstream | 84762 | 4027837 ~ 4033822 (+) |
| CI01000000_04138020_04144928 | NA | coding | downstream | 18158 | 4138020 ~ 4147823 (+) |
| CI01000000_04149689_04156988 | CNOT6B, CNOT6, CNOT6A | coding | downstream | 29827 | 4149689 ~ 4157477 (+) |
| CI01000000_04165348_04197615 | NA | coding | downstream | 45423 | 4165285 ~ 4197821 (+) |
| CI01000000_04225109_04225608 | NA | coding | downstream | 105247 | 4225109 ~ 4226616 (+) |
| CI01000000_04355381_04356090 | NA | coding | downstream | 235519 | 4355381 ~ 4356143 (+) |
| G2385 | NA | non-coding | upstream | 133764 | 3984464 ~ 3984820 (+) |
| G2293 | NA | non-coding | upstream | 242888 | 3872440 ~ 3875696 (+) |
| CI01000000_03864153_03869858 | NA | non-coding | upstream | 248338 | 3864137 ~ 3870246 (+) |
| G2420 | NA | non-coding | downstream | 72262 | 4192124 ~ 4192354 (+) |
| G2427 | NA | non-coding | downstream | 81316 | 4201178 ~ 4201401 (+) |
| G2752 | NA | non-coding | downstream | 303854 | 4423716 ~ 4423954 (+) |
| G2755 | NA | non-coding | downstream | 305533 | 4425395 ~ 4425738 (+) |
| G579 | NA | other | upstream | 2209776 | 1767917 ~ 1908808 (+) |
| G435 | NA | other | upstream | 2685730 | 1425121 ~ 1432854 (+) |
| G350 | NA | other | upstream | 3441647 | 671842 ~ 676937 (+) |
| G252 | NA | other | upstream | 3611512 | 503209 ~ 507072 (+) |
| G2774 | NA | other | downstream | 333916 | 4453778 ~ 4454232 (+) |
| G2850 | NA | other | downstream | 606124 | 4725986 ~ 4726482 (+) |
| G6811 | NA | other | downstream | 6084969 | 10204831 ~ 10321679 (+) |
| G6820 | NA | other | downstream | 6307361 | 10427223 ~ 10433018 (+) |
| G7018 | NA | other | downstream | 6858627 | 10978489 ~ 10980872 (+) |
