gspt1 (gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042)


Basic Information

Item Value
gene id gspt1
gene name gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8520500 ~ 8528474 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253923.1
CAGCTAACTAGCTACACGTCCGTGGTGTCGCATGAAGACTAGGCGCCCCATGCACCATTTCAGCACATTTGAGAGTTTCCCAATCCCTCGATTTGCCTGGAATAGATACTGAAAAAACAGCAGATTTggttttgtacaaaaaaaaccccgcCTCGTGGGTTATAGCGCAGCCCGCTAGAAACGTCGGCTATTCGAGTTAAAGCCACTATGGACTCGAGAGACACAGCCCCTGATTCGTGGGAACAGGAGGACGATGTTGAGGCCACGGCTGATACCGAGCTTCAGTCCGCCTTCACCGGGCTCAACGTGAACGCTCCGGAATTCGTACCGTCTTTTCTTTCCCGAGGTCCACCGGAAAACGCCACGTCTGATGGCACCGATGCAGTGGCCAGTATGGAGATCTCAGAACCAGTGGCTGCAGTGGAGAATGGAGAGACAGATGCCGCCGCAGTGGAGACATGGGAGCAGAAAGGTGAGCCGGATGAGGAGGAACCGGGAGGTGGATCCTCAGCGGACACAGGATTTGGCGGGGATGAGGCGCAGGATGAAATGatggaggaggatgaggaaatgcCAACACCAAAGCTGCCTCCTCCTCCACCGGATGCCCCTAAGAAAGAACACGTGAATGTTGTGTTCATTGGACATGTGGATGCAGGCAAGTCTACAATTGGTGGACAGATAATgtATCTAACTGGTATGGTGGAAAAACGAACGCTGGAGAAATATGAACGGGAGGCAAAAGAGAAGAACAGAGAGACTTGGTATCTTTCCTGGGCTCTAGACACAAACCAAGAGGAAAGAGACAAGGGGAAAACTGTAGAAGTTGGAAGAGCCTACTTTGAAACTGAGAAAAAGCACTTTACTATTCTTGACGCCCCAGGCCATAAAAGCTTTGTACCCAACATGATTGGAGGGGCATCCCAAGCTGATTTGGCAGTGCTGgtCATCTCTGCCAGAAAGGGTGAGTTTGAGACCGGTTTTGAAAAGGGAGGTCAGACAAGAGAGCATGCCATGCTGGCTAAAACAGCTGGAGTGAAACATCTGATAGTCCTCATCAACAAAATGGACGACCCCACTGTGAACTGGAGTTTGGATAGATACGAGGAATGTAAAGAGAAGTTAGTGCCATTTCTGAAGAAGGTGGGCTTTAATCCAAAGAAAGACATTCACTTCATGCCCTGCTCTGGCCTGACTGGAGCTAACCTGAAAGAATCTTCTGAGCTTTGCCCTTGGTACACgggATTACCATTCATTCCACATCTGGACAGCCTGCCAAACTTCAACAGATCAAGTGATGGTCCCATCCGATTGCCTATTGTGGATAAATACAAGGACATGGGCACCGTGGTGCTTGGAAAACTGGAGTCTGGAAGCATAGCGAAAGCACAACAACTTATTATGATGCCAAATAGGCACACGGTGGAAGTGTTGAGCCTTCTCTCTGATGATGTGGAGACGGATTACGCTGGACCTGGTGAAAACCTGAAGCTCCGGCTCAAAGGCATCGAGGAGGAAGAGATTCTCCCAGGCTTTATCCTATGCAATGCTGAGAACCTCTGCCACTCAGGACGCACTTTTGATGCCCAGATCGTCATTATCGAACACAAATCCATAATATGCCCAGGTTACAATGCTGTATTACACATCCATACCTGCATAGAAGAAGTGCAGATAACAGCATTAATCTGTCTGGTGGACAAGAAGACTGGAGAAAAAAGCAAGACTCGTCCACGCTTCGTCAAACAAGACCAAGTATGCATCGCCCGTCTTAGGGCCGCAGGAACTATCTGCTTAGAGACTTTTAAAGACTTCCCTCAAATGGGACGTTTCACCTTGAGAGACGAGGGCAAGACAATCGCAATTGGCAAGGTGCTTAAGTTGGTACCTGAGAAGGACTAAATGCAGATAGAAGGAGATCCCTGGTGCACTCTGGGATTGAGGAGGATGCAGTGATGTGTGCCTGCCAGATGTCCTCCAAACTGCTCCATCTTCCCACTGTGGATCAGTCTAAGAAAATTACTTTGGAAAAAGGACATTATCAAAGTGACAGTATCAATTTTAGGAAGAACATTAATATAGAAAGACAAGCTAAGTGTGACAGCTTTCTCATATTGAGAGCTCAGCTATGCCACTCATGTAGCCCAACTTTTAAAGCCAGTTTCTCTCCACTGGTACATATTCAATCTTAAAATGGATGCAATTTTCTTTTAAGGTATTGGCTTTTTAAGTTCATGATCAATATGAGAGAGGGAGTCTTGGTATCATCTGTTTTGAAAGGTTAATGCCATTACTGTGTCCCCCATTCAAACATAACGCTCACGTCACCCCCATTAGAATGCAGGGTCTCTGGTTGCATATCACTTTATAACAGCATCATTGGTGGTTAGAGACTTCTGACTGTTTCATTATGGCATGAAGGGGGTCCATACAGGGTCTAAGCTTGCCAGCACCCTTGCTCTTTACCTGACAAGTACTGCAAGAGTCGTGATTGTCAAGATCAGGCCGTACAAGAGGCCTTGGTCcttcaaataaaatgacacttaTGTAGAGATTTAATCATGCACAAGACAAATGGATGAATTTGTTACTGTGATGTCATTGCATAACAAATGACAAATGCACCcatgtggttaaaaaaaaaaaaaaaaaaaaaaaaaaaaacttgtcacATCAGATGGTGTAAATTCTGTACACTCCTGTTGGGGATGTAAACATCAAacttccaaaaaataaaacactaaaatgacttaaaatgga

Function

symbol description
gspt1 Predicted to enable GTPase activity and translation release factor activity. Predicted to be involved in cytoplasmic translational termination. Predicted to be part of translation release factor complex. Is expressed in axial mesoderm; immature eye; myotome; optic primordium; and retina. Orthologous to several human genes including GSPT1 (G1 to S phase transition 1).

NR:

description
eukaryotic peptide chain release factor GTP-binding subunit ERF3A-like

GO:

id name namespace
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
K03267 ERF3, GSPT; peptide chain release factor subunit 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253923.1 True 2760 mRNA 0.46 14 8520500 8528474

Neighbor

gene id symbol gene type direction distance location
rsl1d1 rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682 coding downstream 447 8517178 ~ 8520053 (-)
LOC122355887 NA coding downstream 1391 8518980 ~ 8519109 (-)
LOC122355888 NA coding downstream 2135 8518235 ~ 8518365 (-)
LOC122355801 LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041 coding downstream 5317 8514713 ~ 8515183 (-)
snx29 snx29,LOC107584181,LOC107734208,LOC107690065 coding downstream 9286 8417232 ~ 8511214 (-)
dmc1 dmc1,LOC107690066 coding upstream 271 8528745 ~ 8531253 (-)
tomm22 tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386 coding upstream 3510 8531984 ~ 8534641 (-)
tmem184ba tmem184ba,LOC107690057,LOC107584104,LOC107554044,LOC107731404,LOC107692069 coding upstream 12745 8541219 ~ 8549833 (-)
csnk1e csnk1e,LOC107584103,LOC103024972,LOC107731422,LOC107690058,LOC107734231,LOC108431980 coding upstream 21910 8550384 ~ 8555651 (-)
tnrc6ba LOC107584179,LOC107690060,LOC107692068,LOC107734183,LOC107731400,LOC107554046 coding upstream 27801 8556275 ~ 8570074 (-)
G86608 NA non-coding downstream 175891 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 180685 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 230090 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 321376 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 330215 8187641 ~ 8190285 (-)
G86775 NA non-coding upstream 7499 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 68920 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 94823 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 98620 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 147172 8675646 ~ 8747077 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 7235 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 160508 8334404 ~ 8359992 (-)
G86203 NA other downstream 1131590 7388236 ~ 7388910 (-)
G86108 NA other downstream 1416282 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1849253 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 82078 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 153969 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 159024 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 347143 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 783179 9311653 ~ 9939849 (-)

Expression


Co-expression Network