rsl1d1 (rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682)


Basic Information

Item Value
gene id rsl1d1
gene name rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8517178 ~ 8520053 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253924.1
TGCTTCTTGAAGTGAAACATTCCATTTCCccatatatttttcaaaataaaagttcttgtgACGTTTACTTGGGAAATACGCATGCGCTCTTGACTTTCTTCACACACGTGCAGCATGGAGTCCCCACGAGATGGATTGGAGCTCGATCGGTCTCAGGTAAATAAAGCTGCACAGGCATTACGGGCATATCTAAAGATGAACTCGTCCCAAAAGCTCTTTGAAAATGATGGCCAGGCCATCTCTCTACTGTTAACTCAATGGAAAATCCCTAGAAAGGAGCAAACCATTCGCATTCCTTTACCCAATGGGCTGAGGACCGAATCAGGAGACGTGTGTCTTTTCACCAGAGATGAACCCAACATGACCTCAGAACAGACCGTGAGATTCTACAAAAAGTTACTTGCGTCGAAAGGGGTCAAAAATACCATAGAGgTGATTCCCTTCAAGGTGTTAAAAACTGAGTATAAGCCCTTTGAAGCCAAAAGGAGACTCCTGGGCAACTTTGATTTGTTTCTGTCAGACGCACGCATCCGCCGCCGTTTACCCGCGCACATCGGAAAGCATTTCTATGAAAGGAAGaaggctCCTCTGTCGGTGGATCTAGAGTGTAATCAACTAGCCAGAGACATGGAGCGCCTCATTCAGGGCACAAGCCTAtctgtttcaaataaaggcTCTTGTTGCATGGTACGTGTAGCGCATTCTGGCATGACAGCAGATGAAATAGTTGAGAACGTGATGACAGCCGTTTCCACCATCTCCTCGAAGTTAGCATTGACaggaaaaaacatcaaaatcatcCATTTGAAGAGTCAGACCTCGGTCGCGCTGCCCATCTACACTTCTGATCTGAGTCACCTCGCGTTGGTGGAGGAGGCCAGGAATGAAGCCCGCGCCGCAAAGggAGCtcaaaagaggaagagagaaatgaagaaaacagaAGTGTCAAAGCTGAGAATTAAACAAACCGAGGAAGAGAAAGACAGCGAAGAAGAGGAAATTCCACAGCTGGTGCCTATCAAGATGCCAAccaaaaaaccaaaacagatGaccATATCTAAAAAAGGACTGAAAAAAGTACAGAAGCCTGCTGCCGGCAAAGgaataaagaaaactgtaaaagacACAAAACTGAGGAAGAAAACACCAAAGGTCACCGCACGTGatctaaagaaaaaagtaaaaaaaactaataaaattaaattgtaaattgcTATCTCATCCTGTTAACAGTTTGTGGACATATATGGACAGAAATTTGTATTACGTGTTATAAGGTTCATGtgagcattttttatttctgatgcGTGTGAACAGTCAATTAAAAGATTTCTAAATCTGA

Function

symbol description
rsl1d1 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to be part of 90S preribosome. Orthologous to human RSL1D1 (ribosomal L1 domain containing 1).

NR:

description
ribosomal L1 domain-containing protein 1-like

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14775 UTP30, RSL1D1; ribosome biogenesis protein UTP30

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253924.1 True 1342 mRNA 0.43 9 8517178 8520053

Neighbor

gene id symbol gene type direction distance location
LOC122355801 LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041 coding downstream 1995 8514713 ~ 8515183 (-)
snx29 snx29,LOC107584181,LOC107734208,LOC107690065 coding downstream 5964 8417232 ~ 8511214 (-)
ercc4 ercc4,LOC107734247,LOC107669240,LOC107692079 coding downstream 185639 8325243 ~ 8331539 (-)
mrtfba LOC107734216,LOC107669223,LOC107584111,LOC107692080,LOC107554034 coding downstream 192137 8303767 ~ 8325041 (-)
mgrn1a mgrn1a,LOC107734214,LOC107669220,LOC107584113,LOC107554032 coding downstream 239013 8267774 ~ 8278165 (-)
gspt1 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding upstream 447 8520500 ~ 8528474 (-)
dmc1 dmc1,LOC107690066 coding upstream 8692 8528745 ~ 8531253 (-)
tomm22 tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386 coding upstream 11931 8531984 ~ 8534641 (-)
tmem184ba tmem184ba,LOC107690057,LOC107584104,LOC107554044,LOC107731404,LOC107692069 coding upstream 21166 8541219 ~ 8549833 (-)
csnk1e csnk1e,LOC107584103,LOC103024972,LOC107731422,LOC107690058,LOC107734231,LOC108431980 coding upstream 30331 8550384 ~ 8555651 (-)
G86608 NA non-coding downstream 172569 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 177363 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 226768 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 318054 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 326893 8187641 ~ 8190285 (-)
G86775 NA non-coding upstream 15920 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 77341 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 103244 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 107041 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 155593 8675646 ~ 8747077 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 3913 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 157186 8334404 ~ 8359992 (-)
G86203 NA other downstream 1128268 7388236 ~ 7388910 (-)
G86108 NA other downstream 1412960 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1845931 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 90499 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 162390 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 167445 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 355564 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 791600 9311653 ~ 9939849 (-)

Expression


Co-expression Network