dmc1 (dmc1,LOC107690066)


Basic Information

Item Value
gene id dmc1
gene name dmc1,LOC107690066
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8528745 ~ 8531253 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253925.1
GCTAACAAacagctaattaaaatgtatcaaaatgtaCGCTAACTATGCCAAATATAAAGATTTATCTAGACTTACAGATTGTTTAACGGTTATCtggatgtattttattgtaaacttGGTTTTTTGTTAAGGAATTCCACAAAATGAAAGCTTTAGAGGACCAGGCTTTGGAGGATGAGTCGGGTTACCAAGAGGATGAGGAATCATTTTTTCAAGACATCGAGCTCTTACAGAAACATGGAATCAACATGGCTGACATTAAGAAACTGAAGTCTGTTGGCATTTGTACCGTGAAAGGCATCCAGATGACCACACGCCGTGCTCTCTGTAACGTAAAGGGGCTGTCTGAGGCTAAAGTAGACAAAATAAAGGAAGCTGCTGGAAAATTGCTGGTATGTGGATTTCAGACAGCTTCtgaatacagtataaaaagGAAGCAAGTGTTCCACATCACTACAGGCAGTCTGGAGTTTGACAAACTCCTTGGAGGAGGTGTGGAGAGTATGGCCATTACCGAGGCTTTTGGTGAATTCAGAACTGGAAAGACTCAGCTCTCTCATACACTGTGTGTAACCGCTCAGCTTCCCGGTGAATATGGGTACACAGGAGGAAAGGTCATCTTTATCGATTCTGAAAACACTTTTCGGCCTGAGAGGCTAAAGGACATAGCTGACAGATTCAATGTGGATCATGAAGCTGTACTGGATAATGTGCTATATGCGCGTGCATATACAAGTGAGCATCAGATGGAACTGTTAGACTTTGTTGCAGCCAAGTTCCATGAAGAAGGAGGTGTCTTCAAGCTTCTGATAATAGACTCGATCATGGCTCTTTTCCGGGTGGACTTCTCTGGAAGAGGTGAGCTGGCTGAGAGACAGCAGAAGCTTGCACAGATGCTCTCCAGACTGCAGAAGATCTCTGAAGAGTACAATGTTGCGGTGTTTGTCACCAACCAGATGACTGCAGATCCAGGAGCTGGAATGACATTTCAAGCAGATCCCAAAAAGCCCATTGGAGGACACATACTGGCACATGCCTCCACCACACGTATTAGCCTGAGGAAAGGACGTGCTGAATTGAGAATTGCCAAAATATTTGATAGCCCAGAGATGCCGGAAAATGAGGCTACTTTTTCCATCACGGCTGGAGGAATAACAGATGCCAAAGACTAAGAAAACACGTCACACAGCATGTTACGAATTCCCCAATCCTTCAACGTCTCCATTGTGTTCAAGAAGGAATCTGTTCACAATTAAACCAGTTGtacctatttattatttacacgTGTATCTGTTACCTATCCGTTTATGCATTGGATCATACAGATCTGT

Function

symbol description
dmc1 Predicted to enable DNA binding activity and catalytic activity, acting on DNA. Predicted to be involved in DNA recombination and chromosome organization involved in meiotic cell cycle. Predicted to act upstream of or within DNA repair and meiotic cell cycle. Predicted to be located in nucleus. Predicted to be active in condensed nuclear chromosome. Is expressed in ovary and testis. Orthologous to human DMC1 (DNA meiotic recombinase 1).

NR:

description
meiotic recombination protein DMC1/LIM15 homolog isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0007131 reciprocal meiotic recombination biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000150 recombinase activity molecular_function
GO:0003697 single-stranded DNA binding molecular_function
GO:0008094 DNA-dependent ATPase activity molecular_function

KEGG:

id description
K10872 DMC1; meiotic recombination protein DMC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253925.1 True 1331 mRNA 0.43 13 8528745 8531253

Neighbor

gene id symbol gene type direction distance location
gspt1 gspt1,LOC107692072,LOC107690055,LOC107734224,LOC107554042 coding downstream 271 8520500 ~ 8528474 (-)
rsl1d1 rsl1d1,LOC107584214,LOC107734245,LOC107554037,LOC107692074,LOC107682682 coding downstream 8692 8517178 ~ 8520053 (-)
LOC122355887 NA coding downstream 9636 8518980 ~ 8519109 (-)
LOC122355888 NA coding downstream 10380 8518235 ~ 8518365 (-)
LOC122355801 LOC107584107,LOC107734172,LOC107690070,LOC107731391,LOC107554041 coding downstream 13562 8514713 ~ 8515183 (-)
tomm22 tomm22,LOC107690071,LOC107554024,LOC107734246,LOC107584213,LOC107692102,LOC107731386 coding upstream 731 8531984 ~ 8534641 (-)
tmem184ba tmem184ba,LOC107690057,LOC107584104,LOC107554044,LOC107731404,LOC107692069 coding upstream 9966 8541219 ~ 8549833 (-)
csnk1e csnk1e,LOC107584103,LOC103024972,LOC107731422,LOC107690058,LOC107734231,LOC108431980 coding upstream 19131 8550384 ~ 8555651 (-)
tnrc6ba LOC107584179,LOC107690060,LOC107692068,LOC107734183,LOC107731400,LOC107554046 coding upstream 25022 8556275 ~ 8570074 (-)
sh3bp1 sh3bp1,LOC107692101,LOC107731399,LOC107690072,LOC107554025,LOC107734168,LOC107584210 coding upstream 60488 8591741 ~ 8600914 (-)
G86608 NA non-coding downstream 184136 8344336 ~ 8344609 (-)
G86606 NA non-coding downstream 188930 8339456 ~ 8339815 (-)
G86576 NA non-coding downstream 238335 8290080 ~ 8290410 (-)
G86553 NA non-coding downstream 329621 8198918 ~ 8199124 (-)
G86505 LOC107692108,LOC107584217,LOC107734162,LOC107669195,LOC107731388 non-coding downstream 338460 8187641 ~ 8190285 (-)
G86775 NA non-coding upstream 4720 8535973 ~ 8538206 (-)
G86798 NA non-coding upstream 66141 8597394 ~ 8628972 (-)
G86807 NA non-coding upstream 92044 8623297 ~ 8626329 (-)
G86809 LOC107731413,LOC107584098,LOC107734194,LOC107663181 non-coding upstream 95841 8627094 ~ 8630207 (-)
G86825 NA non-coding upstream 144393 8675646 ~ 8747077 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other downstream 15480 8511403 ~ 8513265 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other downstream 168753 8334404 ~ 8359992 (-)
G86203 NA other downstream 1139835 7388236 ~ 7388910 (-)
G86108 NA other downstream 1424527 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1857498 6670319 ~ 6671247 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 79299 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 151190 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 156245 8687498 ~ 8687570 (-)
LOC122355288 LOC107660874 other upstream 344364 8875617 ~ 8878131 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other upstream 780400 9311653 ~ 9939849 (-)

Expression


Co-expression Network