fam13c (fam13c,LOC107654055,LOC107727053,LOC107596592,LOC107695537,LOC107746461)


Basic Information

Item Value
gene id fam13c
gene name fam13c,LOC107654055,LOC107727053,LOC107596592,LOC107695537,LOC107746461
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 1761798 ~ 1774365 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253927.1
AGACCccccttccctctctctctctctctctctctctctctctctcatgctcaGTTTTCGCCACTAAAAGAGTGGCATGAATAATCCATGCCAGATAAAGAACTGCAGCAGAGAGGGACGTGATCACAAGCCTCGCTCGTGCACATACGCACACCCTcggacacactcacacacgcacgcgtGTATCGTGAGCGGGGCTGATGGAGGCAGAGCTGAGGGGCGTGTGAGACTGCAGTGGCATCCTTCTTCTCCTCTCGACGCGTGCAGAACGATCTTCCTATTGCGATCCAAAAGCCGAAGCTGGCATGTTCTGCTTCTGCTTGCAGGGCTCTTTGCTGAAGCTCCAGGCTCTGGAGGGAGACAGCAGCCCATCGTCAGACCTCTCTCCCGAAGAAAGTCCACCCAGCCTGGGATTCAAAGATGAAATTCTTATTCCTTCGTGCAATGGCGTTGGGCAAGAGCACAGCTTACCAGactgTAGGATGGCAGAGGGTGACTGTAGCGGTGATCTCCAGCAGAGCCCCGGGCCTAGTCGACTCATCCAGCACATCACAGACGACAACAGCCCCCTGCCCTCCCCACGCTGCTCCAGCCTCAGCCAGAGCCAACGCTTTAACTCAGACCCTGAATCTGCTCCGTCTCCACCCTGCGCCCAGCATCTCATCATGGCTCGTGGACTTGTTAGAACGGAGGTTCCTGGAGACGCAAAGGAAGCTACTTCCATCCCTCTCCTCACCAAACACATCCAGACTCTCAAGAGGAAAATACGCAAGTTTGAGGAGCGCTTTGAGCAAGAAATGAACTATAAGCCTTCTCATAATGATAAATCGGCCAATCCAGAGATTTTCAAGCTCATGAGTGAGCTAGCCAGGTCTCGCAAGCAGCTCAAAGATTTAAAGCTCAGAGAGTCATTTGAAGAATCCCGGACACATGAGACCAACCAGTCCACAGATATTTGCAGGTACACCAACGGCCAGCCGGAGGCGCCAGAGCAGCAGCACAAGCCCTCTCTGGAGGAGACCGTGGACGCACTGCTGAAACGGCTACGGGAGAAACGCCAGGCCCTCGGCCTCCCagacaacatgaagGAGATGACCCAAAGACAGATGGCCCTGGAGAAGATCACTCTGCAAAAATGTCTGCTGTATTTTGAGAGCTTACACGGCCGCCCTGGCaccaaacaagaaaaaaacttgGTGAAACCTCTCTATGATAGATACCAGATGGTGAAACATCTTCTGTGTGCGATTCCCACTATTACAACTATaGAAGAAGAGGAAGGCTCAGATGACGACTCGGTTCGGTACACACCCCCACCCATGTGCCTCACTGATAAGAGAGGCTGtggggaggaggagggagaCAGCGACCCGGCCTTTGTGTCTCCGCTGGATGAGATCAAGACAGTCAGACATTCAGCCATAACCATGTCCAACCTCCACGAGGCCTCCAGGTCTGAGCTGCTGGAGTGTTTACGTGAGACTCGATCCGAGAAAAAGAGACGACGTAAAGCCATTAGAGAGTTTGAAGAGCAGTTCCTCAGACAGATGGGAAGaaccgcacaaaaagaTGACCGAATCCCGATGGCCGAGGAGTACCAGGAGTATAAAAGTCTCAAAGCCAAATTACGCTTACTGGAAGTGTTGCTCAGCAAACAGGAAACCACATAGACTTAGAGTTAAAGAGATTCTTTCTGCCTTTCAGTGTTGAACCCAATGTTTGGACCAAATGGAGTTTTTACATTTGACATAATTGTGCCATAATGATGCTAACTTTATATGCACTTTAATATCATTTCTGACCGCATTGGAAGTCCTGGACTCAATGGGTTGGGCCGAACCGATCAAGGCCTTTCGGGGGCCACTATCACATATTCGCAAACGCGTGCGATCTCTGTGCTGTGTACAGAGCGAGACGGATCGATACGAACCTCATTCAGATCTCAAAGGGCAAAAGGATATATAGAGTATTCATCTATGTTTATGGAATATGGCACTTTATTTTTGGAGAGgatttttttaaccaaagtCGAATCATATGCAATTTTCACGTTTTCTTGCTCTTGTTTGAAGCTAGTTTATGATTCTAATTAGGAACATGGTGACATTATGCACACTAATGAGGATCCATGATTCTCTGGGGCTAGACATGATCTCTAGCCTGTCAAATAATGCAAGGCTCTAGATAGAAAACAACTCCGAGCACTTAAAATAATGGATTTATGCAAATTGCGATGAGTTCCCTAACATAAACAGCAGCAACAAACCATAATTGTATGCATTGTAAGAACTAGCAAAAGGTAATTGTTTATTTCTCATAGTCGTCTCTCGCATTAAAAAGGGAGCACAAAATGAGACATTGAAAAGATTCTCCCAGAaagactgtatttttaaatatatatttactcagAAACGTTAAAGTATGGTACGTGGCCATCACAGAGCACAGTTTTCCTCCTATACATGaagaacaaataatatattggCTAAAATGAACACTGTCGAATCACGTCGTACGCTAAAAATAATACTGAAGCCCAAAGCAGGAGATATGTTCGTGAGAAGCGGATGTGCGCTTTAAGTGCAATTCTGCTCAAGTAGCTACTCTCTGGAAACGAAACAATCAATATCTTTCCGACGGCTCTACTGCAATGAACTATTACAATCTTTGTGTAGTGTCTTTGCATGCCAACCAGCGTAAACTGTTGAATTGTGCTACAATCAGGTGTGGTTATTCTGTCATGTTATCGTTCGTCCCAGAATTGATTTGCTGTACACATCCACAATGACAAATGtagcttttgaatgttagctaTAGTGCACGTAACTCTACATTggtttatacagtaaatatatatatgcttaactatatatatttgctttatcGTGAACCTTTTCTTTTCCATCACCAAAGTCCTGTATTGTGCACTTCTGATTCTGTCCATTTTCTATTCaccagttaaaaaataaatatttttctatctaCA

Function

symbol description
fam13c Orthologous to human FAM13C (family with sequence similarity 13 member C).

NR:

description
protein FAM13C-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253927.1 True 2986 mRNA 0.46 10 1761798 1774365

Neighbor

gene id symbol gene type direction distance location
zgc:171971 zgc:171971,LOC107695535,LOC107596590 coding downstream 103051 1652449 ~ 1658747 (-)
ube2d1b ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC106607701,LOC107553913,LOC107733527 coding downstream 113036 1642834 ~ 1648762 (-)
ipmkb ipmk,ipmkb,LOC107746459,LOC107654052,LOC107708928,LOC107695532 coding downstream 119801 1628163 ~ 1641997 (-)
pcdh15b pcdh15b,pcdh15,LOC107654051,LOC107695531,LOC106578947,LOC106589399 coding downstream 387714 1217427 ~ 1374084 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding downstream 705364 1045416 ~ 1056434 (-)
slc16a9b slc16a9b,slc16a9,LOC107654057,LOC107596608,LOC107727058,LOC107695515,LOC107746460 coding upstream 15644 1790009 ~ 1796994 (-)
ccdc6b ccdc6b,ccdc6,LOC107695538,LOC107654058,LOC107746455,LOC107727062 coding upstream 23693 1798058 ~ 1813172 (-)
tmem26b tmem26,tmem26b,LOC107695511,LOC107745662 coding upstream 200405 1974770 ~ 1977715 (-)
egr2b egr2b,LOC107739063,LOC107653961,LOC107745678,LOC107596614,LOC107593522,LOC107596611 coding upstream 367005 2141370 ~ 2143777 (-)
LOC122355364 cyp26a1,LOC107653962,LOC107593523,LOC107745679,LOC107596578,LOC107695519,LOC107739064 coding upstream 556928 2331293 ~ 2335604 (-)
G84919 NA non-coding downstream 7227 1751402 ~ 1754571 (-)
LOC122355537 NA non-coding downstream 24529 1710498 ~ 1737269 (-)
G84909 NA non-coding downstream 32376 1727106 ~ 1729422 (-)
G84892 NA non-coding downstream 111664 1649461 ~ 1650134 (-)
G84884 NA non-coding downstream 133762 1626295 ~ 1628036 (-)
G84928 rhobtb1,LOC107654062,LOC107727061,LOC107745661,LOC107695540 non-coding upstream 190621 1964986 ~ 1969050 (-)
G84956 NA non-coding upstream 226969 2001334 ~ 2001636 (-)
G85116 NA non-coding upstream 532527 2306892 ~ 2309033 (-)
G85119 NA non-coding upstream 536878 2311243 ~ 2311471 (-)
G85173 NA non-coding upstream 707882 2482247 ~ 2483927 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 864281 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 1209355 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 1261579 496964 ~ 500219 (-)
LOC122355759 NA other downstream 1271419 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 1401316 340273 ~ 360482 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 39718 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 399623 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 993543 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 1315264 3089629 ~ 3103315 (-)
G85366 NA other upstream 1484166 3258531 ~ 3299688 (-)

Expression


Co-expression Network