hexim1 (hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140)


Basic Information

Item Value
gene id hexim1
gene name hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7171396 ~ 7173368 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253937.1
CCAGTCTTCTCCGTATCAGAAGCGAATTGGAGTTTGCATGGAAGGGAAATGTTGTCGTACTCGTCAAGAAAACAAGTCAATAGTAGACGGAACAGAActaatttatattaacattcTCAGATAGCATAATAACTCAAACACGAGATTGGAGTTGAACGGTGGGAGTGTACAGTTATGGAGCTTAATAAAGAAGAAGCTGCACTGGAGGATGACAGCAGAGGGCGGCAGAGGGATGGTCTGACAAGTGTCGTCTCCTCGAAACAAGTGCAAAGAAACCAGCTGGAGATCTGTCCGGGTTTGGTGTCTGGAGATACACATCCTATGTGCCGCGGCCGGGATAGGAGTGATCCGGAGCCCAAGGCTGGTGACGCAGCAAGTGACGACGGCTTTCCTGTGGATAAAAAGAGAGACAGTGATTGCACGACAGTAAACACCGAGGGGCTGTCAGATGGCCGGCAGGGCAAGAAAAAACACCGGCGACGACCTTCCAAGAAGAAGCGCCGCTGGAAACCTTACTTCAAATTAACCTGGGAGGAGAAGAAAGAGCTAGATGAACGTGAGACCGCCCGTGCATCTCGGGTGCGCGCTGAGATGTTCGCGAAAGGTCTGCCCGTTGCCCCATACAACACCACCCAATTTCTGATGGAGGAGCACGACCGCGAAGAACCTGACCTCAACACGGAGCTAGGCGGCAGAAAGTCTGGGGCGATTCGCTCCGATGACACAGCTAGCGAAGATGAGAATTTCGAAGGAGAAGATGAAGACGAGGAAGAGGGCGGCGGTGGCGGAGGCAGCGACGGTATGGGCAGACCCGGGCACGCAGGCGGAGAGTTTTTGCAGAGAGACTTTTCTGAGACCTATGAGCGGTACCACGTCGAGACTCTCCAAAATATGTCTAAACAAGAACTGGTTAGGGAATACCTGGAGCTCGAGAAATGTATGTCACGGTTAGAGGAAGAGAACAACTGGCTTCGCCACCTCCGTAGAAACCCCGAGTCCCCGGCAGACGGCACCGGCGTTCAGCGCGTGCGGGAGCTGGAGATTGAGGTGGAGAGACTGAGAGCCGAGAACAACGAGTTATTACTCAAAACCCCTAAAAGCAAAGGTCCAGGACTCGATCAGTCTCAGTCGTGttgaatcagtgttttattcCTGTTGTACGTCACATCGTTGCACTGTCTTActgtaaacaaatgtaaacatcTCTTTGGTAGCCAATACCCTCTCAGCCTTTGCCGTTTGaaggttatatattttttatggtttttataatgttgtttttttttttttctctcttaggacagaattttatttaaatctttcatGCGCTCCCACATATTTGGTCAAGCCACAACAATATACGTTTGTGATTTGTACAATTGAActctgaaaaaatgaataacctACAATGTTATGtataaaattaaagaaagatCAGAGACTACTCTTGTTAATTTTCTGAGTATATGCCATAACCTCACAAATTAAATTTCAGTTGTCAATTGCCAtagtacttaaatatttaacttgcatttaatttaaaaacaaaacatttagcgCTTCAGATTCCTATTTGTTGGCGCACATGCTTTATGTGTGTTGATGCATGGTAAGACCGTATGTTGTAAACCGTGGGAAACCGTTTATGGTGTTTTGcccaaatatattaaattattttgtattttagttgtaattttatttgtctttttatgttGCCTGCTATATTTTGTCAgtgtttaaattataaatatccAAACCTTAA

Function

symbol description
hexim1 Predicted to enable 7SK snRNA binding activity and cyclin-dependent protein serine/threonine kinase inhibitor activity. Acts upstream of or within protein-containing complex assembly. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleoplasm. Is expressed in head. Orthologous to several human genes including HEXIM1 (HEXIM P-TEFb complex subunit 1).

NR:

description
PREDICTED: protein HEXIM-like

GO:

id name namespace
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0017069 snRNA binding molecular_function
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity molecular_function

KEGG:

id description
K15189 HEXIM1_2; protein HEXIM1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253937.1 True 1762 mRNA 0.45 2 7171396 7173368

Neighbor

gene id symbol gene type direction distance location
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding downstream 891048 6197482 ~ 6280348 (-)
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding downstream 1149240 6017991 ~ 6022156 (-)
mylpfb mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412 coding downstream 1293175 5875085 ~ 5878221 (-)
pkmyt1 pkmyt1 coding downstream 1408785 5748277 ~ 5762611 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding downstream 1424866 5736592 ~ 5746530 (-)
acbd4 LOC107661095,LOC107733800,LOC107662569 coding upstream 1250 7174618 ~ 7182834 (-)
kcnj19b si:dkey-100n10.2,LOC107584158,LOC107758432,LOC107661094,LOC108424892,LOC107727700,LOC108273498 coding upstream 186015 7359383 ~ 7365015 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding upstream 331348 7504716 ~ 7521406 (-)
pcgf5b pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714 coding upstream 353708 7527076 ~ 7538565 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding upstream 378764 7552132 ~ 7554852 (-)
G86098 NA non-coding downstream 159966 7011203 ~ 7011430 (-)
G86096 NA non-coding downstream 162283 7007826 ~ 7009113 (-)
G86094 LOC107569001,LOC107741973 non-coding downstream 168465 7002260 ~ 7002931 (-)
LOC122355669 LOC107741973,LOC107661982,LOC107569001 non-coding downstream 169247 7001006 ~ 7002149 (-)
G86091 NA non-coding downstream 205985 6965090 ~ 6965411 (-)
G86184 si:dkeyp-94b4.1,LOC107675649,LOC107758427,LOC107561632 non-coding upstream 110518 7283886 ~ 7285998 (-)
G86185 NA non-coding upstream 113042 7286410 ~ 7287752 (-)
G86187 NA non-coding upstream 115802 7289170 ~ 7290516 (-)
G86186 NA non-coding upstream 117360 7290728 ~ 7292120 (-)
G86188 NA non-coding upstream 124432 7297800 ~ 7298146 (-)
G86108 NA other downstream 67178 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 500149 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1093328 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1159285 5990913 ~ 6012111 (-)
G85925 NA other downstream 1183616 5984989 ~ 5987780 (-)
G86203 NA other upstream 214868 7388236 ~ 7388910 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 1161036 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 1338035 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 1437184 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1509075 8682443 ~ 8687548 (-)

Expression


Co-expression Network