ifit9 (LOC107669232,LOC107753434,LOC107584193)


Basic Information

Item Value
gene id ifit9
gene name LOC107669232,LOC107753434,LOC107584193
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7612135 ~ 7614367 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253976.1
caaatataaaaCCCGGTGGCCGTATACAATAAAACCGACAATAATACATGTCCATACATTATGGGTTTATGACGACTAAAAatcaaaagtaatttaaatgactttcaCCGCATATCGCGAAAGCGAAACCTATCTCTCTGccttttttgtttcgttttcgTGACATCGAATCTTTCGATACGCGGACCGAAGGGAAAGAACGCATcctgaaatataaaatgagCAACAAAGACATGGAAGTTAAGCTCAAGCAGCTGGAGTGTCTTTTTACATGGGGAGTAGAAAAATCTGACATAAGGGATTTGAACAGCTTACCAGAAAGACTCCATGATAGAATCAGATTTTGTCCACAAAGGTATCACGCTACCTATTTCAACCTTCTGGCTTTCATCAGCCACCTGGAGGGGAAAACGGAGAATGCGCTTGATTACCTTCAAAAGGCTGAATTGGCATTAAGGGAAGACCATCGACAGAAAGTCGAGTTCCTTGTGACCTTCTCCAGTTTTGCGTGGGTACACTATCACTTGCAGAGGCTAGATGATGTGGAAGATTACTTGAACGAGATGAAAAGTATATGCAAGGACATACCAGGTTCGTCGGATTACTCCTGCAGCTTGCCCTCAGTACATGGTGAGAAAGGCTGGAGCTTTCTGAGACTTGGAGGAACGTTCTATGAACAAGCAAAAGAGAGTTTCTCTAAGGCTCTTGAGGCGGAACCAGACAACGTGTATTTTAATGTAGGCTACGCAATAGTGCTTTACAGGATTGATGGCATGAACAAAGCAGGAGATACTGGAACTGTCACTGAACAGCTAAGAAAGGCTCACAGCCTGGAGCCCACAAACACTGAGATCATGGTACTTTTGGCTCTGAAACTCCAGAGGTCAAGGAGACAGGAAGCACAGAACCTTATAAAAGAGGCCCTCAGGTTGTCTCCCGATGTCCCACAAGTAACCAGATATGTTGCTAAATATTTCAGGGCAGAGGGCTCCATTAGAGAATCCCTGTCTCTCCTCACTAGGGCAGTGCAACACGCCCCAAACTCCTCCTTCCTGCACCATCAAATAGGCCTTTGCCATAAACAGCTGCTTATTCAGATGTTGGAGGAGAAGAGGCCTGGTAAACGAGTTCCTGCTGCTCAGAAATCTGCTAAGGTGGCTGAATGTATCCAGCACTTCTCAAAGTCTGTGGAGCTGAAGCCTAGCAATATTTATGCTAAAGTCAATTTAGCAGAGGCCTACGGGGAGAACCGACAACTTGCACAGGCCGAGAAGATTTTCTGCAGCCTGATAGACGACAAGGCTCTCAGCGAGTCCGATAAGCAGCACTGCTACACGTCCTATGGTGCATTTCTGCTCTACAAGAAAAAGGACGAAGACCAAGCCGTCAGTCAGTTCAAGTCGGCATACACGATTCCTATCGACGGCTATGAAAGGAAACAAGCTGGCAAGAAGCTCAGAGTAATCGCAGAGAGGAATCTCAACACCAAGCAGAAAATCAGAGAAGCTTACGAGATTTTGGCTTTTGTATCTTCTGAAGACAAGCAGGAGACACAAGCAAAGGAGTATCTGCGGAGAGCCCATCAGTACTGCTCACATACCGATGAGCTGTCAAAAAACTTTGCCAGGGGACtaaaattttaacttttttacttttacttacaATAATGCTTCTAATGTACACTTAATTGTTTACGTAGTAAAAAGTAACATTCTGGGTGTTATTGATGGGGATTTTGACTTTAGTACAGATTACACAATTAGTTACTGTCTTTAACGTGTCAGTAACAAacttacttttactttaaacaatgttttgtttgtgtgtgtcactatatataaatgaaatatacataataaaaataaacaaataa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253976.1 True 1873 mRNA 0.43 2 7612135 7614367

Neighbor

gene id symbol gene type direction distance location
ifit10 LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722 coding downstream 143 7609394 ~ 7611992 (-)
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding downstream 3419 7604853 ~ 7608716 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding downstream 33934 7573171 ~ 7578201 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding downstream 57283 7552132 ~ 7554852 (-)
pcgf5b pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714 coding downstream 73570 7527076 ~ 7538565 (-)
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding upstream 22476 7636843 ~ 7646791 (-)
lipf lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444 coding upstream 37381 7651748 ~ 7662731 (-)
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding upstream 106020 7720387 ~ 7735245 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding upstream 133225 7747592 ~ 7754731 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding upstream 140490 7754857 ~ 7760517 (-)
G86325 NA non-coding downstream 15137 7592801 ~ 7596998 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding downstream 21152 7588311 ~ 7590983 (-)
G86232 NA non-coding downstream 89134 7522664 ~ 7523001 (-)
G86230 NA non-coding downstream 107674 7502577 ~ 7504461 (-)
G86210 LOC107758434,LOC107584156,LOC107669230,LOC107594152 non-coding downstream 125060 7480055 ~ 7487075 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding upstream 1501 7615868 ~ 7617213 (-)
G86334 NA non-coding upstream 17029 7631396 ~ 7634556 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding upstream 20271 7634638 ~ 7636144 (-)
G86354 NA non-coding upstream 84298 7698665 ~ 7699014 (-)
G86356 NA non-coding upstream 90854 7705221 ~ 7705483 (-)
G86203 NA other downstream 223225 7388236 ~ 7388910 (-)
G86108 NA other downstream 507917 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 940888 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1534067 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1600024 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 720037 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 897036 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 996185 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1068076 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1073131 8687498 ~ 8687570 (-)

Expression


Co-expression Network