ifit10 (LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722)


Basic Information

Item Value
gene id ifit10
gene name LOC107584141,LOC107753434,LOC107669232,LOC107758418,LOC107594210,LOC107683722
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7609394 ~ 7611992 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253979.1
ctctttccctctctcttcatccaaagtttcagttttcattttgagttTACCACTCCCATCTCTAGGAGAGGTCAATAAAATCTGCACAAGCTTCCGCATTAAATAGATTCTGAAACATTCATCATACAGGCGTCCTATAAGATATGGATCTGGACAGAACTCTGAGATCAAAACTTCACCAGCTGGAATGCCACTTCACCTGGGCTCTGATAAAAGATGATATAGATCTAAATGATATTCTCAATAGACTGGAAGAACAGATTAAGTTGGACTTCGCGAAGAAAGAAAGACTTGCCAGAACTTATAGTGCTCTGGCATATGTCCAATTCCTTTTGGGGTTACACGAGGAAGCCCATAACAGCCTCATGATATCTGTGAAGTTACACACGGAATGCCATGGGGATGAATTTCACAAGACGCTCATTGTCACTTATGGAAACCTTGCCTGGTTAAACTACCACATGAAGAACTACACAGAATGTGAAAATTATTTGAAGAGGCTTCAGGAGATAAACGAAACCTTGCAAACTGAGTTTTCATCTGTCCCAGAAGTGCTGGGTGAGAAAGGATGGACTTTTCTTAAATTCTCCCGGAAATATTACGATAGAGCCAAACAATGTTTTAGGAGGGCTTTAGATCTTGAACCCGAGGAAGGGGAATGGAATGCTGGCTATGCCATTTCCCTGTATCGCACTGATTACGAGAAATGCACTTTGGAGGATTCGCACACAATAAAGCAACTGAGACTGGCCATTGAAACGAATCCAGATGATGACGTTCTCAAAGTCCTCCTAAGCTTGCGACTGATGGTTTACAAGAAGTACAGAGAGGCTGAAAGCTTGGTAGAGAAGGCTTTAGAAAGCTCTCCAGATCACCCACATGTAATGAGATATGTTGCGAAATTCTTCAGGAACCAAGGAAGTGTGGACAGGTCAATTGCTCTTTTAAAGCGAGCCCTTGAACGCTCACCTAATTCAAGTTTCATTCATCATCAGTTAGCTCTTTGCTATAAGATGAAGAAAATCCAACTGCTGCAAGAGGGAAGTCACCACACCAAAGGGTCAAGAGTTCAACAGATTCGCAATCAATGTATCTATCATTTAGAAAAGGCCACCAGCTTGACGGCCTTCTTCATTTCTGCAATGAGCGATCTAGCGCTGATGTATGGAGAAAACCACGACATGTCACGGGCTGAGGAGCTGTTTCAGGTCACTTTCAAAGCAGCCGAAGAGAAGAATGACAATCTACACGTGGTCAATTTGTGCTATGCTGAGTTCCAGCTATACAGTCACAGATGTGAGCAGTTGGCTATTAAACACTACATGGAATGTCTAAAGATAAGCCCTGATTCGGTCGAAGGGAAAAGAAGTGCCTATGGTTTAAAGAAGATTGCTGACAAACGGATTAAGAGAAACTCACTGGAAGGGTAGGCTTATGGCATACTAGGGtttcttcataaaataaaaggaGAGAAACATCAGGCCATTGAGTGCTATGAGAAATCTCTGAGTTATGAAGACAATGATGAGTTCCTCAGCAACCTTAGCGCACTCAGGCTGTCCTTGCAGTGAAGTCATCACATATTTTGTGCTTACACTATCAGATGTACATACTGCTATACGCATCTGAGCGTGCTACATGTATCGACACTTTatggttatttattatataactgtataatggagattaagttaaattatataatatactttgTCTTTATTAATGGCTAAAATAGTTTACAGTATTTCTAAATGGTCTAATACAGTATTTACCCAAAAGTCACTTTACACTAAGAGCTTAAAAGTTGAAACAAAACTTATAATGTATATAGGTCTTgtttctttgtctgtttttctcaAGCAGTTGTTTGTACAGATCAAAAACTGTTACACGGGTACTGTggattgataaaaaaaatgtaattgtttcttGATGTGagaataatcaataataatatatcaagTACTggtgaaataaacatttacctTTAAACCTA

Function

NR:

description
interferon-induced protein with tetratricopeptide repeats 5-like

GO: NA

KEGG:

id description
K24850 IFIT5; interferon-induced protein with tetratricopeptide repeats 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253979.1 True 1996 mRNA 0.39 2 7609394 7611992

Neighbor

gene id symbol gene type direction distance location
LOC122355798 LOC107753456,LOC107669160,LOC107584195,LOC107594195 coding downstream 678 7604853 ~ 7608716 (-)
LOC122355224 LOC107758424,LOC107594208,LOC107669182,LOC107584235,LOC107753458,LOC100536080,LOC107683721 coding downstream 31193 7573171 ~ 7578201 (-)
rpp30 rpp30,LOC107669172,LOC107584236,LOC107753460,LOC107758421,LOC107683719,LOC107594207 coding downstream 54542 7552132 ~ 7554852 (-)
pcgf5b pcgf5b,LOC107584148,LOC107594155,LOC107669177,LOC107753439,LOC107758437,LOC107704022,LOC108410714 coding downstream 70829 7527076 ~ 7538565 (-)
hectd2 hectd2,LOC107584154,LOC107758436,LOC107594154,LOC107753452 coding downstream 87988 7504716 ~ 7521406 (-)
ifit9 LOC107669232,LOC107753434,LOC107584193 coding upstream 143 7612135 ~ 7614367 (-)
stambpl1 stambpl1,LOC107594159,LOC107758441,LOC107669191,LOC107683716,LOC107584140 coding upstream 24851 7636843 ~ 7646791 (-)
lipf lipa,lipf,LOC107753430,LOC107584137,LOC107594160,LOC107758444 coding upstream 39756 7651748 ~ 7662731 (-)
ptenb pten,ptenb,LOC107669198,LOC107584135,LOC107594163 coding upstream 108395 7720387 ~ 7735245 (-)
papss2b papss2b,papss2,LOC107680272,LOC107753426,LOC107724695,LOC107584134,LOC107594166,LOC107669161 coding upstream 135600 7747592 ~ 7754731 (-)
G86325 NA non-coding downstream 12396 7592801 ~ 7596998 (-)
G86324 LOC107683711,LOC107669213,LOC107594157 non-coding downstream 18411 7588311 ~ 7590983 (-)
G86232 NA non-coding downstream 86393 7522664 ~ 7523001 (-)
G86230 NA non-coding downstream 104933 7502577 ~ 7504461 (-)
G86210 LOC107758434,LOC107584156,LOC107669230,LOC107594152 non-coding downstream 122319 7480055 ~ 7487075 (-)
G86330 ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 non-coding upstream 3876 7615868 ~ 7617213 (-)
G86334 NA non-coding upstream 19404 7631396 ~ 7634556 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding upstream 22646 7634638 ~ 7636144 (-)
G86354 NA non-coding upstream 86673 7698665 ~ 7699014 (-)
G86356 NA non-coding upstream 93229 7705221 ~ 7705483 (-)
G86203 NA other downstream 220484 7388236 ~ 7388910 (-)
G86108 NA other downstream 505176 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 938147 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1531326 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1597283 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 722412 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 899411 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 998560 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 1070451 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 1075506 8687498 ~ 8687570 (-)

Expression


Co-expression Network