ch25h (ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211)


Basic Information

Item Value
gene id ch25h
gene name ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7615839 ~ 7617013 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253980.1
TAAACGTGCTGCCATTCAGAAAAGAACTGACAAGAACTGAAAAGAAATGACAATGTTTGGACCGCAGTACATTTGGGACAGCATCCAGCAGTACGAGGCCGTGCTAAGGTCTCCTTTTTTCCCAGTTCTGTTCTCTATTACAGTCTACCTAGGcttctgcctgccttttgtCGTTCTGGATGCCCTATCACCTAGGGTAGCACTGATAAGGAGATACAAGATTCAACAGAAAACCAGCGTGTCTTGGAAGATGATATGGAGCTGCCTCGCGCTCTCACTCTACAACCACGCCGTGTACATCTTCCCACTGAGTGTCCTGCACTGGTACTGGAGACCTGTCAGCTACCCGGCGATGGCACCTGAGCTCCTGCGAGTCATCTGGGACCTTGCTGCCTGCCTGCTCCTCTTCGACTTTCAGTACTTTGTATGGCATCTTCTGCATCACAAAGTACCTTGGCTCTACCGCACTTTCCATAAGGTGCATCACAAATACACCTCCACCTTCGCTCTGGCCACTGAATACTCAGGGGCTTGGGAGACTCTGTCGTTGGGCTTCTTCGCCGCTGTGAATCCTATGTTACTGGGGGTTCATCCTATGACAGAGATGCTTTTCCATATGCTGAACATGTGGCTGTCGGTTGAGGACCACTGCGGCTATGACCTGCCATGGGCCACTCACAGACTGGTACCTTTTGGCCTGTATGGAGGAGCTCTGCACCATGATGTCCACCATCAGAAGTTCAAGTCCAACTACGCTCCATACTTCACCCACTGGGACAAGCTCTTCGGGACACTGCACTCTGAATGAATTTAGCAAATGGAACAAACTACATGAACTGATTTCAtctatctttttttataaaaagtgcAATATCATTCTATGAATGAATAACTTTGActctaaaacctttttttattttttttaaaagttgcttTATAATTCATGTGTGTTAATTTAatatactcatttatttatttattttttgcttgtatTTATGTGTGACTAAGAAAAATTGTCAGAGATATGGCTGTGCTATTTCTAAGTATGATGTGAACTATATTTGTTAACCTagactaatatttatatttatttataagccTGTTTTGATGCTGAATGTTTTAAACTGGAACATGAAGAACTAACTAATGGCAATAAAGCTATGAAGTAAATGATA

Function

symbol description
ch25h Predicted to enable C-4 methylsterol oxidase activity and cholesterol 25-hydroxylase activity. Acts upstream of or within defense response to virus. Predicted to be located in endoplasmic reticulum. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum membrane. Is expressed in gill; intestine; kidney; liver; and spleen. Orthologous to human CH25H (cholesterol 25-hydroxylase).

NR:

description
cholesterol 25-hydroxylase-like protein

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process
GO:0016126 sterol biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function

KEGG:

id description
K10223 CH25H; cholesterol 25-hydroxylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253980.1 True 1175 mRNA 0.43 1 7615839 7617013

Neighbor

gene id symbol gene type direction distance location
slc16a12b slc16a12b,LOC107753457,LOC107669179,LOC107584144,LOC107758438,LOC108413683 coding upstream 11285 7597840 ~ 7604554 (+)
pank1b pank1b,LOC107753437,LOC107669213,LOC107683711,LOC107758439,LOC107594157,LOC108413682 coding upstream 18835 7588301 ~ 7597004 (+)
kif20bb kif20bb,LOC107669226,LOC107753438,LOC107584147 coding upstream 49668 7555013 ~ 7566171 (+)
ankrd1b ankrd1b,LOC107584237,LOC107669173,LOC107753461 coding upstream 63345 7549004 ~ 7552494 (+)
ppp1r3cb ppp1r3cb,LOC107584161,LOC107753441,LOC107758435,LOC107704020,LOC107594153,LOC107669176 coding upstream 123014 7487720 ~ 7492825 (+)
acta2 acta2,LOC107683715,LOC106531354 coding downstream 13547 7630560 ~ 7636148 (+)
ankrd22 ankrd22,LOC107753431,LOC107758445,LOC107584139,LOC107594161 coding downstream 31168 7648181 ~ 7651744 (+)
rnls rnls,LOC107669231,LOC107584138,LOC107680274,LOC107594162 coding downstream 46093 7663106 ~ 7696729 (+)
atad1b atad1,atad1b,LOC107680273,LOC107669218 coding downstream 125822 7742835 ~ 7747786 (+)
cyth3a cyth3a,cyth3,LOC107753449,LOC107669236,LOC107584132,LOC108437157,LOC108258062,LOC107556600 coding downstream 145976 7762989 ~ 7777555 (+)
G86219 NA non-coding upstream 111340 7502578 ~ 7504499 (+)
G86202 NA non-coding upstream 226858 7387668 ~ 7388981 (+)
LOC122355189 NA non-coding upstream 296248 7317500 ~ 7319591 (+)
G86141 NA non-coding upstream 317805 7297683 ~ 7298034 (+)
G86140 NA non-coding upstream 318296 7297318 ~ 7297543 (+)
G86275 NA non-coding downstream 84330 7701343 ~ 7701799 (+)
G86283 NA non-coding downstream 101971 7718984 ~ 7719283 (+)
G86268 NA non-coding downstream 103379 7720392 ~ 7723861 (+)
G86374 NA non-coding downstream 229545 7846558 ~ 7846862 (+)
G86460 NA non-coding downstream 439918 8056931 ~ 8060176 (+)
G86143 NA other upstream 307610 7307924 ~ 7308229 (+)
G86142 NA other upstream 310991 7303138 ~ 7304848 (+)
G86029 NA other upstream 1093268 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1174313 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1399272 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 198810 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 488135 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 578951 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1219435 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1668650 9285663 ~ 9306831 (+)

Expression


Co-expression Network