bms1 (bms1,LOC107675025,LOC107689949,LOC107566656)


Basic Information

Item Value
gene id bms1
gene name bms1,LOC107675025,LOC107689949,LOC107566656
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12860134 ~ 12877268 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253995.1
CGTAACCACTTCCGCCCTTAACCGGAAGTGCAGCACACGTGTAAACAGTGGATAGTGTCACGTTGTGCACCAGTGAAATGATAACATGAAATAACGTCTTGATTTCTGAGATCATATGTGCATCGGCTTTGAATAAACTGTAACCACAAAAGAAAAGCAAAGATGGAGAAGAAAGAACAGAAGCGGCACCAGCACAAGCACAGTGGACCCAAGGCACAGAAGAAGAACAGAAAGAAGGAGCAGGGCACTGAACAAAATCAGGATGAACGCAAGAGGAACCCACGAGCGTTTAGTGTCCAGTCAGCTGTGCGCATGGCAAAATCCTTCCATAGGACTCAGgatattaaaacaaagaaacatcaCATTCCTCTGGTAGACCGGACCCCTCTGGAGCCCCCACCTGTTGTTGTAGTGGTGATGGGACCTCCAAAAGTGGGCAAAAGCACCCTCATTCGATGCCTGATCAAAAACTATACACGACAGAAGCTTTCTGACATCTGTGGACCTGTGACCATAGTTTCTGGAAAGAAACGTCGCCTGACCTTGATTGAGTGCAACAATGACATCAACAGCATGATTGATTTAGCAAAGATTGCTGATTTGGTTCTGATGCTGATAGATGCAAGTTTTGGCTTTGAAATGGAGACCTTTGAGTTCTTAAACATTTGCCAAGTTCATGGCTTCCCTCGAGTCATGGGGGTCCTCACACATCTGGACACTTTTAAGAACAACAAAACGCtctcaaaaacaaagaaacgccTCAAACACCGCTTCTGGACTGAAGTTTACCAGGGTGCCAAGCTCTTCTACCTGTCTGGAATGGTGTATGGAGAATACCAGATACAGGAAGTTAAGAATCTTGGGCGGTTCATCTCAGTCATGAAATTCAGACCTCTTGTTTGGCGGACCTCTCACCCATATGTGGTGGCTGACCGTATGGAAGATCTTACTGATCCTGAGGCTATTAGGTTAAATCCCAAATGTGACAGAACTGTCTCTCTGTATGGCTACCTACGTGGGACATTCTTGAAAAATAAATCCCAGGTCCACATTCCtgGTGTGGGCGACTTCTCAGTGTCGGATGTTAGCTTCCTCCCGGACCCCTGCCCTCTGCCGGAGACCATTAAGAAGAGAGCGTTGAATGTTAAGGAAAGGTTATTGTACGCCCCCATGGCCGGTGTAGGGGGATTGGTGTATGATAAGGACGCCGTCTACATTGATATGCCCAGTGGACATGCCAGCCAGCAGCAGGAGGAGGTGCGGCCCACCACTGAACTCGTTCAGTCTCTTATTGGCACGCAAGCCACTCTGGATGAAAAAATGGCTGCCAGCAAAGTCTCACTATTCACAGGAACTGCTGCACTGGCACCAGAGGAGGTGCAGGAAAATGAAAAACAGAACCCTCTGGAAGTCCGAGAATGGGATGAGAAAgcccagagagagaggaggagagctgTTTTTGCTGATGAAGacgaagatgatgatgatgatgatgatgatgatgatgaggaagaagaaagtgatgaagatgaggatgaagaggaacaggatgaagatgaggatggAGAGGAGATAACAACATTAAAAAGGGAAGATAAGAAAGCAGTTGAGACAGCAGCACCTCCTGTGAAGAAACAGAAGTTTGAGAAATCCATGGAAATGCCTGCATTTGCTGATAGTGATGATGAGCTGGAAAAGGGTGAAGGAGAGGAATGTGAAGGTGAaagtgaggaggaggaggaggaggaggaggaggaggttgATGAGGAAACTGAGGAAGGGGAACCTGCAAAAAGAAGCTTGGGGCCAGACTCTGGTCTCTGCTCAGAGGAAGATGACgaggatgaagaagatgatTTTGATATGGATGAAGAAGGAAATGGGGTTGTAAAATCAAAGATGTCCTCGAAGCATTCAGAGGAAGAAAAGCTAGGCATAGAGGATGCAGAGATGGGTTATGAAACTGCAGGAGCACTACGGTGGAAGGAGGATTTAGCCCAAAAAGCATCAGAGGCATATTTAAGACATCAGCTTGCTGCGCCAAACCTGCGCAAATTAGTGTACGGCACAGTGGCGGAGGAGAAAGAAGAGGATTCTAAAGATGAAGAAGAGTTGGGCGGTTTATTTAAAGTCAGTCGACCAGAGAAGAGTAAGAAAGTACGAGCAGATGCGATAGACTGTTCTCGCTTTCACCCAGACAGCAGCCATGACTGGGATCAGGAGGAGATGTTAGCCTCTATCAGGGACTGTTTTGTGACTGGAAAATGGGAGGAGGATAAAGATGCTGCAACACTGCTTAAGGAAGATGATGAACTCTATGGAGATTTTGAAGATTTGGAAACAGGCGAAGTTCACAAAGCAAAGACTCTCAATAAAGACAAAGCTGagGGAGGGAATGAGGAGGAAATaaatgatggtgatgatgatgatgatgatgaagaagaggaggaggctCCCGAAGTGAAACTTAACGATgatgaaattcaaaagaacaagCGTTTGGAGAAGAAGAAGCGGCTGAAGGAGAGATTCGATGCACAATATGATGATGGCGACGCCACATACTTTGATGACCTGAAGGAGGAGATGCAGAAACAggctgagTTGAACAGGCAAGAGTTTGAAGACATGGATGATGAAGTGCGTGTTCAGTACGAGGGCTTCAGGCCAGGCATGTATGTTCGTGTGGAGATCCCCACTTTACCTTGTGAGTTTGTCACCAACTTCGACCCTCACTATCCCATTATTCTTGGCGGATTGGGCCCCAGTGAGGGAAATGTTGGCTACTTGCAGATGCGTCTGAAGAAACACCGCTGGCACAAGCGTATCTTGAAAACCCGTGACCCTCTCATCCTGTCTTTGGGCTGGAGGCGCTTTCAGACCATTCCCCTCTACTACATCGAGGACCACAACGGACGTCACCGCCTGCTTAAATACACACCTGAACACATGCACTGTGGAACCACCATCTGGGGGCCTATAACACCCCAGGGTACAGGCTTCCTGGCTGTGCAGACGGTCGGTGGTATTAAGGCCAATTTCCGCATCGCTGCCACAGGAGTGGTTCTGGACCTGGACAAATCAGTTACAATTGTGAAGAAGCTCAAACTGATTGGATACCCTTATAAAATCTTTAAGAACACCTGCTTTATCCAGGGAATGTTTAACACCGTCTTGGAGGTTGCGAAGTTTGAGGGAGCGTCCGTCCGCACAGTCAGTGGCATTAAAGGGCAGATAAAGAAAGCCTTGCGCACCCCGCCGGGCGCATTCAGAGCCACGTTTGAGGACAGACTACTGATGAGTGaTATTGTATTCCTGCGCTCCTGGTATCCGGTCTCGGTTCCTCAGCTGTATAATCCAGTGACATCTCTACTAATGCCGGTTGGACAGAAGGACACATGGGCAGGCATGAGGACCCTCGGACAGCTTAAACACGACCTGGGTATACGCAACAAACCCAACCAGGACTCACTGTACAAGCCGGTTGTAAGGCAAGTTCGACACTTCAACACCCTCCACGTTCCCAAAGAGCTGCAAAAGGCCCTCCCCTTCAAGAACAAACTCAAACAGATGCAGGCCAAAGGCAAAACCCCACGGGACCTGCGGAGACCGGCTGTCGTACGAGAGCCCCATGAGAAAAAGGTGGCAGCGTTGCTCGATGCTCTGAGCTCCGTCTACGCATTCAAGAGCAAAAAGGCGAAAGCAGAACAGCACGCCAAGCACAAAGAATTCCTGaagcagaaagagaaacaggATGCAGAAAGGCAGAAGAGGctgaaagaagagagaaagaagaccTACCGTGCAATgggacagaaagagaagaagaaactcAAATCCAGCCTGAAGGGAGCATCCAAGGACAATTGAGTCTACCTCGCACCTGATTCTGTTAGACTGTGACTCCAGGCCCATCGGATCAGGGTCTGTTACGCTCTTGGTTAGACTGTTTGAAATGCGCCATAATTCGATTCCCACACCGGCTGCTGTTACTGAGCTGGCTCAAGAGTCGAGATGATGACACTGCAGGAGACCCGATGGCTTTTGCTGAAGTCTGAAAAGATATAATCTCCCTAGAAACAAGAACAATAAAACTGCCTGGTTAACTTTTTAGTAAATCTGAAAGGTTTTCTATAAAAAGATTTAGCAATgttttacagtaaggttcaaTTTGTTCATGTTGCTTGATGTGTCTGGTATAATGAACTAACAGTGAACATCTGCAATCTAGATTTagtcataaatattaaaattgtttgttGTTAATGGATGTTAGTTCGTAATACATAAACAATTATTCATTTGTGCGACTTGTTAAAATGTATAAGTACGCACATGTATAAATCAATCTACTTTAATAAATGATTGTTCATTGTTAATTTGTTTACCGTTGCATTCACCGATGTTAATAAATTGAACCTTTTTGTGAAATCCTAACTAAAAAGATCCATAATCCATCCAAAAATATATGCAACCGTTTCTTACTGAATTTTACCGCAGTCATAAAAAAACCTGcttatatttgtctttttctgcttgtttttaataaaaatttgtgtgactgaaaaaaaaaataggaaggAAATGGCATTTGTTGACAGATAAAAGGGTTGGATGCTTGTCAACATTCAGTGGCATGAGCTTGTAATAAATTCTTGAGCAGGGGCTGTAGGCGCCCACCAGCGTTCTCTGTAATAGCCTAATTATTGGCATGTAGATTTTGTCCTGGGCACTGTTATTTTAAGCGATAACCATGTTTTTTAGGGTTTATTACCGAGTTGGAGTGAATTTCTGTGCTGTTGTGGGCTATTGAGTCAGATATAATCCGTTGCCTGCTGCTGAGCCCTTTCCagaatatatgttgtttttcctCACAAAGCAAAATGGCAGGTTGAAAACTTGTGAACAGCAACTGAACTGCGATGTGTCAGCATCAGGGGTTGTAGGGACAGATGTTCAATAGTGCAGGGAGTGCCTATGTGTGATAGCGATTTATTGAAAGGATGATTAAGCATGCGAGGTGTTTCAGTGTCTTTAAAGGAAGTAAACATCATGACGGGGTTCTGCACAGCCAAGAGTCTCTGAGGACTAATACATGTCTGTCATGAAGTCTCCAAACAGTAGCAATTAACAGCACTGTTTTGTTCTTCATATGTCTCATGCTTGGACCAGCTGGCAGTGGTCGAACAAAACCTGCCGGTCCGCTGGCATATTGACTTATATATATCTAAAGtagattatattgtaataacGCACTGTCATGGAAGAATAAGGCCTAATTGAAATAATGTCTTTCTCTGTGAACGGCTCCACGGAATATACTGGACAAAAGAGTGGAAATTGTGTCTATAATCAGAATGCCCGCAATAATAAGAGTGTTTCACAGACAGAAAACGAAGCACACTATATAGATCTATTTTGTTGCCAGCAAATCCAAAACAAACTCTGTGCGACTAAAGATTTGATGCCATTAACCTGATTTTGGCAGTGTTGCTATTAACTAAAAgtgactaaatattttttttgttaattgaaatatagctcaaataaaatactttttttggttGCATAAA

Function

symbol description
bms1 Predicted to enable GTP binding activity; GTPase activity; and U3 snoRNA binding activity. Acts upstream of or within liver development; pancreas development; and rRNA processing. Located in nucleolus. Is expressed in gut; liver; pancreas; and retina. Human ortholog(s) of this gene implicated in nonsyndromic aplasia cutis congenita. Orthologous to human BMS1 (BMS1 ribosome biogenesis factor).

NR:

description
PREDICTED: ribosome biogenesis protein BMS1 homolog

GO: NA

KEGG:

id description
K14569 BMS1; ribosome biogenesis protein BMS1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253995.1 True 5573 mRNA 0.45 23 12860134 12877268

Neighbor

gene id symbol gene type direction distance location
mxtx2 mxtx2,LOC107566646,LOC107675004,LOC107754102,LOC107722443,LOC107563796 coding upstream 606 12858248 ~ 12859528 (+)
adgra1a adgra1a,LOC107754080,LOC107675035,LOC107565950,LOC107693584,LOC107563791,LOC108426471 coding upstream 18169 12815191 ~ 12841965 (+)
gabrz gabrz,LOC107675029,LOC107677887,LOC107743757,LOC107754081,LOC107565977,LOC107563789,LOC108426470 coding upstream 47150 12791289 ~ 12812984 (+)
valopb valopb,LOC107566010,LOC107754082,LOC107743790,LOC107677889,LOC107675006,LOC107563788,LOC108426422 coding upstream 86439 12766125 ~ 12773695 (+)
gjz1 si:rp71-1c10.10,LOC107675010,LOC107563802,LOC107754116,LOC107677869,LOC107743778 coding upstream 108402 12750626 ~ 12751732 (+)
gfra1b gfra1b,LOC107755550,LOC107702444,LOC107581544,LOC107689950,LOC107707958 coding downstream 204905 13082173 ~ 13107311 (+)
ablim1b ablim1b,ablim1,LOC107565789,LOC107689952,LOC107581547,LOC107755543 coding downstream 326514 13203782 ~ 13268621 (+)
afap1l2 afap1l2,LOC107755545,LOC107702445,LOC107689955,LOC107707932 coding downstream 397965 13275233 ~ 13307508 (+)
si:ch211-225b10.3 LOC107702429,LOC107566028,LOC107755542,LOC107707918 coding downstream 456958 13334226 ~ 13339065 (+)
ccdc186 ccdc186,LOC107566113,LOC107581550 coding downstream 467714 13344982 ~ 13367920 (+)
G87753 NA non-coding upstream 301402 12556682 ~ 12558732 (+)
G87718 NA non-coding upstream 382225 12476805 ~ 12477909 (+)
G87669 NA non-coding upstream 619933 12239783 ~ 12240201 (+)
G87665 NA non-coding upstream 701626 12158246 ~ 12158508 (+)
G87664 NA non-coding upstream 702319 12157586 ~ 12157815 (+)
G87891 NA non-coding downstream 22804 12900072 ~ 12900399 (+)
G87934 NA non-coding downstream 318716 13195984 ~ 13197074 (+)
G87979 LOC107755539,LOC107566694,LOC107702418,LOC107708141,LOC107689963 non-coding downstream 471681 13348949 ~ 13383848 (+)
G87981 NA non-coding downstream 483046 13360314 ~ 13361050 (+)
G88010 NA non-coding downstream 552145 13429413 ~ 13431559 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other upstream 97403 12760374 ~ 12762731 (+)
G87817 NA other upstream 122485 12732764 ~ 12737649 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other upstream 914499 11936841 ~ 11945635 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 976037 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 1158479 11694844 ~ 11701655 (+)
G88016 NA other downstream 564675 13441943 ~ 13444915 (+)
G88082 NA other downstream 718526 13595794 ~ 13596348 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other downstream 978427 13855695 ~ 13864743 (+)
LOC122355339 LOC107702424 other downstream 1017093 13894361 ~ 13904627 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other downstream 1100903 13978171 ~ 13993044 (+)

Expression


Co-expression Network