plxdc1 (plxdc1,LOC107732187,LOC107566549,LOC107694606)


Basic Information

Item Value
gene id plxdc1
gene name plxdc1,LOC107732187,LOC107566549,LOC107694606
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 6799785 ~ 6961984 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043253996.1
AgttcagaaagagaaaaggcGAGGTGACAGtaggagggagaggaggagcaAGAAAAAACGACTTGAGTAGTGCATGAAGGAAAGTGAGAGCAACAGAAGGATTGTGGGGTGGACATGGGTCTGTGTGCTGTGTTGTTGATTTGTCTCTCACAGACAGAGCTGACCAGAGTGTGGGCTCAGGAGCAGAGAGGTATATATCACGGGCAGTCAGTGAAGGCTAATGGAGGTCCATCAGACAACCAGAGAACAAAAAGAGACCAGGAAGATTTCAGCAGACGTACTCAGAACAGAACTGGACAAGAGTCAGCCAACAGGCTATCCATTGACATATTCCCTGACAATTTGACAGGAGTGGCGCAGGACTCCCAGAGGTACTACTCCTGGCGCAGTTTTGGTCCAGGTGACAAACGAACACAGGATCTTTGGGTGGATCTTGATTCAATGCATCAAGCACCTGATCAAGGAGTGCACGCTATTCTAtccaacacacacagacaagcatCGCGGGTGGCACTGACGTTTGACTTTCTTTTCTATGGACATCAAGTGAGACAAATCACCATAGCAACTGGAGggTTTATTTTCACTGGAGAGATAACACACCGCATGCTGACAGCGACGCAGTATATTGCTCCACTCATGGCAAACTTTGACCCCAGTTTTTCTAAAAACTCCACTGTGAAGTATCTGGACAATGGTGACATATTTGTGGTGCAGTGGGACAAAGTGAGGCTGAAAGATCGAGAGACTGAAGGAGCTTTCACTTTCCAGACTGTTCTCTGTCATAACGGGACCATTGTTTTCAGCTACAAAGATGTTCCATTGCCTGTAGAGAAAATCAACTCCACTGAGCATCCAGTGAAAGTGGGACTGTCTGATGCTTTCATgggtcttttgtcttctccacaATATCCAGATGCTAAACGACGGACAATTTATGAATACCATCGGGTGGAGATTGACACAACAAAGATTGTCAATACCTCAGCATTTGAATTCACCCCCTTACCAACCTGCCTCCAGCATAATACCTGTGAACAATGTATCCAGTCCAATCTAACATCAGGCTGTGGGTGGTGCAATACTCTTCGAAGGTGTTCAAATGGAATTGACCGATACAGGCAAGAATGGCTGGACTACAGTTGCTCTGAGGAGGCAAAAGGCACATGTGGCAATTATGCACAGAGAGGACCAGATAGTACAATCAGCCcttttaattcatcattgtcagtGATGACTCCTTCCCCTGCAACTCGACCTGTCAGTCCTGTGAACGAAGATGACACTAATCTTCTCTTTTATCAACATGGCAATGGTGAGGAAGAAACACCAGAACACACAGCCATCATTGCAGGTGTAGTGACAGCTTTAGTTCTACTGGTGTTCTTGACCCTGTTGGCTGTCTACTACATCAACACACATCCAACTGTTGCTCCTCCTTTCTACCTCATGCAGCGTCGGACCAATAACTATTGGCCCTCGATGAAGTTTCGGAATCAAGGATGCCATTCCAGCTATGCTGAGGTTGATCTTGGTGGTTACGAAAAAGAGGGGTTTATAGAAGCAGAGCAGTGCTGAAGCAGGCAGGTCTTTCTGTTTAATGCATGGACTAAAGAgagttattttgtaatttttcttgAATGATTGTCAAATGCGCAGTGAGAGGATGCCACTGTTGAGGGTATATGTAAGAgattttgtgattatttaaaatataatttgagaGTTTTTGGAGTTTTTCTCTGTCGCTGTCTCTCCATAGTTGGCAGTCAATcttaaaacaccttttatgcagttgtttttaataaaggaaGTTTTTACGTTCTAAGAGGTACTAATTATAACAAAGACATGGTAATTGTGACCAGCAAATCTGCTAATTACACTCCATGAGAATTGAATGTGTGTTAGTCAAATTGATTGCAGGTTAATGTACAGTGTCACATATCTTtatagattttcttttctttttcagttttttaagacattttgtgATGAAATGTATTCAGTGGATGAACATTGCTCTCAAGTCCACATGGCTAATTGAGTATTATGCATTCAGATAGCTTACTTTAGTATTAATGATAGCCTAAGTAATGGCACACTTTTTCGCCCCGTCAAGTTATGCCCTGTCATTTAGTCCTACAACTGAAACTCAATTTgcacataaaatattacatatatatatatatatatatatatatatatatatatatatatatatatatgatattatatatatatattttatatataaatataatttagcttCTCTGAGAATTTAACAAGTGTATTTCCAAAGCTGTTTGTagaagtaaaatgtgttttcctgTTGAATGTATTATCTGACATTAGAAATccatgtgacaaaaaaaaaatcattgtgttGCCAGGGTTGCATTTACAACATACAGATTgcttattgtaa
>XM_043253997.1
AgttcagaaagagaaaaggcGAGGTGACAGtaggagggagaggaggagcaAGAAAAAACGACTTGAGTAGTGCATGAAGGAAAGTGAGAGCAACAGAAGGATTGTGGGGTGGACATGGGTCTGTGTGCTGTGTTGTTGATTTGTCTCTCACAGACAGAGCTGACCAGAGTGTGGGCTCAGGAGCAGAGAGGTATATATCACGGGCAGTCAGTGAAGGCTAATGGAGGTCCATCAGACAACCAGAGAACAAAAAGAGACCAGGAAGATTTCAGCAGACGTACTCAGAACAGAACTGGACAAGAGTCAGCCAACAGGCTATCCATTGACATATTCCCTGACAATTTGACAGGAGTGGCGGACTCCCAGAGGTACTACTCCTGGCGCAGTTTTGGTCCAGGTGACAAACGAACACAGGATCTTTGGGTGGATCTTGATTCAATGCATCAAGCACCTGATCAAGGAGTGCACGCTATTCTAtccaacacacacagacaagcatCGCGGGTGGCACTGACGTTTGACTTTCTTTTCTATGGACATCAAGTGAGACAAATCACCATAGCAACTGGAGggTTTATTTTCACTGGAGAGATAACACACCGCATGCTGACAGCGACGCAGTATATTGCTCCACTCATGGCAAACTTTGACCCCAGTTTTTCTAAAAACTCCACTGTGAAGTATCTGGACAATGGTGACATATTTGTGGTGCAGTGGGACAAAGTGAGGCTGAAAGATCGAGAGACTGAAGGAGCTTTCACTTTCCAGACTGTTCTCTGTCATAACGGGACCATTGTTTTCAGCTACAAAGATGTTCCATTGCCTGTAGAGAAAATCAACTCCACTGAGCATCCAGTGAAAGTGGGACTGTCTGATGCTTTCATgggtcttttgtcttctccacaATATCCAGATGCTAAACGACGGACAATTTATGAATACCATCGGGTGGAGATTGACACAACAAAGATTGTCAATACCTCAGCATTTGAATTCACCCCCTTACCAACCTGCCTCCAGCATAATACCTGTGAACAATGTATCCAGTCCAATCTAACATCAGGCTGTGGGTGGTGCAATACTCTTCGAAGGTGTTCAAATGGAATTGACCGATACAGGCAAGAATGGCTGGACTACAGTTGCTCTGAGGAGGCAAAAGGCACATGTGGCAATTATGCACAGAGAGGACCAGATAGTACAATCAGCCcttttaattcatcattgtcagtGATGACTCCTTCCCCTGCAACTCGACCTGTCAGTCCTGTGAACGAAGATGACACTAATCTTCTCTTTTATCAACATGGCAATGGTGAGGAAGAAACACCAGAACACACAGCCATCATTGCAGGTGTAGTGACAGCTTTAGTTCTACTGGTGTTCTTGACCCTGTTGGCTGTCTACTACATCAACACACATCCAACTGTTGCTCCTCCTTTCTACCTCATGCAGCGTCGGACCAATAACTATTGGCCCTCGATGAAGTTTCGGAATCAAGGATGCCATTCCAGCTATGCTGAGGTTGATCTTGGTGGTTACGAAAAAGAGGGGTTTATAGAAGCAGAGCAGTGCTGAAGCAGGCAGGTCTTTCTGTTTAATGCATGGACTAAAGAgagttattttgtaatttttcttgAATGATTGTCAAATGCGCAGTGAGAGGATGCCACTGTTGAGGGTATATGTAAGAgattttgtgattatttaaaatataatttgagaGTTTTTGGAGTTTTTCTCTGTCGCTGTCTCTCCATAGTTGGCAGTCAATcttaaaacaccttttatgcagttgtttttaataaaggaaGTTTTTACGTTCTAAGAGGTACTAATTATAACAAAGACATGGTAATTGTGACCAGCAAATCTGCTAATTACACTCCATGAGAATTGAATGTGTGTTAGTCAAATTGATTGCAGGTTAATGTACAGTGTCACATATCTTtatagattttcttttctttttcagttttttaagacattttgtgATGAAATGTATTCAGTGGATGAACATTGCTCTCAAGTCCACATGGCTAATTGAGTATTATGCATTCAGATAGCTTACTTTAGTATTAATGATAGCCTAAGTAATGGCACACTTTTTCGCCCCGTCAAGTTATGCCCTGTCATTTAGTCCTACAACTGAAACTCAATTTgcacataaaatattacatatatatatatatatatatatatatatatatatatatatatatatatatgatattatatatatatattttatatataaatataatttagcttCTCTGAGAATTTAACAAGTGTATTTCCAAAGCTGTTTGTagaagtaaaatgtgttttcctgTTGAATGTATTATCTGACATTAGAAATccatgtgacaaaaaaaaaatcattgtgttGCCAGGGTTGCATTTACAACATACAGATTgcttattgt
>XM_043253998.1
AgttcagaaagagaaaaggcGAGGTGACAGtaggagggagaggaggagcaAGAAAAAACGACTTGAGTAGTGCATGAAGGAAAGTGAGAGCAACAGAAGGATTGTGGGGTGGACATGGGTCTGTGTGCTGTGTTGTTGATTTGTCTCTCACAGACAGAGCTGACCAGAGTGTGGGCTCAGGAGCAGAGAGGTATATATCACGGGCAGTCAGTGAAGGCTAATGGAGGTCCATCAGACAACCAGAGAACAAAAAGAGACCAGGAAGATTTCAGCAGACGTACTCAGAACAGAACTGGACAAGAGTCAGCCAACAGGCTATCCATTGACATATTCCCTGACAATTTGACAGGAGTGGCGCAGGACTCCCAGAGGTACTACTCCTGGCGCAGTTTTGGTCCAGGTGACAAACGAACACAGGATCTTTGGGTGGATCTTGATTCAATGCATCAAGCACCTGATCAAGGAGTGCACGCTATTCTAtccaacacacacagacaagcatCGCGGGTGGCACTGACGTTTGACTTTCTTTTCTATGGACATCAAGTGAGACAAATCACCATAGCAACTGGAGggTTTATTTTCACTGGAGAGATAACACACCGCATGCTGACAGCGACGCAGTATATTGCTCCACTCATGGCAAACTTTGACCCCAGTTTTTCTAAAAACTCCACTGTGAAGTATCTGGACAATGGTGACATATTTGTGGTGCAGTGGGACAAAGTGAGGCTGAAAGATCGAGAGACTGAAGGAGCTTTCACTTTCCAGACTGTTCTCTGTCATAACGGGACCATTGTTTTCAGCTACAAAGATGTTCCATTGCCTGTAGAGAAAATCAACTCCACTGAGCATCCAGTGAAAGTGGGACTGTCTGATGCTTTCATgggtcttttgtcttctccacaATATCCAGATGCTAAACGACGGACAATTTATGAATACCATCGGGTGGAGATTGACACAACAAAGATTGTCAATACCTCAGCATTTGAATTCACCCCCTTACCAACCTGCCTCCAGCATAATACCTGTGAACAATGTATCCAGTCCAATCTAACATCAGGCTGTGGGTGGTGCAATACTCTTCGAAGGTGTTCAAATGGAATTGACCGATACAGGCAAGAATGGCTGGACTACAGTTGCTCTGAGGAGGCAAAAGGCACATGTGGCAATTATGCACAGAGAGGACCAGATAGTACAATCAGCCcttttaattcatcattgtcagtGATGACTCCTTCCCCTGCAACTCGACCTGTCAGTCCTGTGAACGAAGGTGAGGAAGAAACACCAGAACACACAGCCATCATTGCAGGTGTAGTGACAGCTTTAGTTCTACTGGTGTTCTTGACCCTGTTGGCTGTCTACTACATCAACACACATCCAACTGTTGCTCCTCCTTTCTACCTCATGCAGCGTCGGACCAATAACTATTGGCCCTCGATGAAGTTTCGGAATCAAGGATGCCATTCCAGCTATGCTGAGGTTGATCTTGGTGGTTACGAAAAAGAGGGGTTTATAGAAGCAGAGCAGTGCTGAAGCAGGCAGGTCTTTCTGTTTAATGCATGGACTAAAGAgagttattttgtaatttttcttgAATGATTGTCAAATGCGCAGTGAGAGGATGCCACTGTTGAGGGTATATGTAAGAgattttgtgattatttaaaatataatttgagaGTTTTTGGAGTTTTTCTCTGTCGCTGTCTCTCCATAGTTGGCAGTCAATcttaaaacaccttttatgcagttgtttttaataaaggaaGTTTTTACGTTCTAAGAGGTACTAATTATAACAAAGACATGGTAATTGTGACCAGCAAATCTGCTAATTACACTCCATGAGAATTGAATGTGTGTTAGTCAAATTGATTGCAGGTTAATGTACAGTGTCACATATCTTtatagattttcttttctttttcagttttttaagacattttgtgATGAAATGTATTCAGTGGATGAACATTGCTCTCAAGTCCACATGGCTAATTGAGTATTATGCATTCAGATAGCTTACTTTAGTATTAATGATAGCCTAAGTAATGGCACACTTTTTCGCCCCGTCAAGTTATGCCCTGTCATTTAGTCCTACAACTGAAACTCAATTTgcacataaaatattacatatatatatatatatatatatatatatatatatatatatatatatatatgatattatatatatatattttatatataaatataatttagcttCTCTGAGAATTTAACAAGTGTATTTCCAAAGCTGTTTGTagaagtaaaatgtgttttcctgTTGAATGTATTATCTGACATTAGAAATccatgtgacaaaaaaaaaatcattgtgttGCCAGGGTTGCATTTACAACATACAGATTgcttattgta
>XM_043253999.1
CAgttcagaaagagaaaaggcGAGGTGACAGtaggagggagaggaggagcaAGAAAAAACGACTTGAGTAGTGCATGAAGGAAAGTGAGAGCAACAGAAGGATTGTGGGGTGGACATGGGTCTGTGTGCTGTGTTGTTGATTTGTCTCTCACAGACAGAGCTGACCAGAGTGTGGGCTCAGGAGCAGAGAGGTATATATCACGGGCAGTCAGTGAAGGCTAATGGAGGTCCATCAGACAACCAGAGAACAAAAAGAGACCAGGAAGATTTCAGCAGACGTACTCAGAACAGAACTGGACAAGAGTCAGCCAACAGGCTATCCATTGACATATTCCCTGACAATTTGACAGGAGTGGCGCAGGACTCCCAGAGGTACTACTCCTGGCGCAGTTTTGGTCCAGGTGACAAACGAACACAGGATCTTTGGGTGGATCTTGATTCAATGCATCAAGCACCTGATCAAGGAGTGCACGCTATTCTAtccaacacacacagacaagcatCGCGGGTGGCACTGACGTTTGACTTTCTTTTCTATGGACATCAAGTGAGACAAATCACCATAGCAACTGGAGggTTTATTTTCACTGGAGAGATAACACACCGCATGCTGACAGCGACGCAGTATATTGCTCCACTCATGGCAAACTTTGACCCCAGTTTTTCTAAAAACTCCACTGTGAAGTATCTGGACAATGGTGACATATTTGTGGTGCAGTGGGACAAAGTGAGGCTGAAAGATCGAGAGACTGAAGGAGCTTTCACTTTCCAGACTGTTCTCTGTCATAACGGGACCATTGTTTTCAGCTACAAAGATGTTCCATTGCCTGTAGAGAAAATCAACTCCACTGAGCATCCAGTGAAAGTGGGACTGTCTGATGCTTTCATgggtcttttgtcttctccacaATATCCAGATGCTAAACGACGGACAATTTATGAATACCATCGGGTGGAGATTGACACAACAAAGATTGTCAATACCTCAGCATTTGAATTCACCCCCTTACCAACCTGCCTCCAGCATAATACCTGTGAACAATGTATCCAGTCCAATCTAACATCAGGCTGTGGGTGGTGCAATACTCTTCGAAGGTGTTCAAATGGAATTGACCGATACAGGCAAGAATGGCTGGACTACAGTTGCTCTGAGGAGttcgtatccagatcagatggtggatcagcaccaagaaaTGACTTTTATCGGAGAcaagaacacctagatgagacccatggacagatcaccagaatACAACGCATACACACTATAAGAACATTGCACAAACTGACATAGctgcatttgaaatgtaaactgCAAATTAAATGTTGGGCATCTGGCCAGAAGAGAATTGAGTCCAACTGAGCCTGATTTcacccaaggttttttttttctccattctgtcacagatgaggcattggttccttgccgctgttgccttagttggggacacttaatttctagcgattatcatcaAATTTATTACAGAGGGGGGTTCTACATATTACATGGTTGGACTATGGTTAGCAGTAGAATATTACTAAATCCCATCTGCTATTGCTAACAGTCGCTagctgtttaattattaattacgcaaacaaacacaaaactacGCAAACAAACAGATTAAACTTACCTGCACTTGAACTCCTGAATAGTTGCCTCTCTGATCCACTCCATTCTTGAGTCTCTTGTATGGATTGCTCTGATAAAAACTTTTTAGCAGAGTGTGTGGCAGCCGAAATGTGTTGCAAGgcaataattgtttattatagatagatagattatatATAGTCATTGAATGGTGATTCACCAAAACTAAAGTAACCAGCCTGgtttgaaaatgtaagaaatatataaaaaacagtaTAGATATTTtgtaacgccacaccagcagagggagccttccCCAGAGTACTGactgtcagctcttcctctgctttctccacgcccacttcccttt

Function

symbol description
plxdc1 Predicted to act upstream of or within angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in Purkinje cell. Orthologous to human PLXDC1 (plexin domain containing 1).

NR:

description
plexin domain-containing protein 1-like isoform X2

GO:

id name namespace
GO:0007275 multicellular organism development biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043253996.1 True 2428 mRNA 0.41 14 6799786 6961984
XM_043253997.1 False 2423 mRNA 0.41 14 6799786 6961982
XM_043253998.1 False 2391 mRNA 0.41 13 6799786 6961983
XM_043253999.1 False 1961 mRNA 0.44 11 6799785 6935072

Neighbor

gene id symbol gene type direction distance location
LOC122355310 LOC107569775 coding upstream 215842 6581588 ~ 6583943 (+)
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding upstream 407954 6324493 ~ 6391831 (+)
med1 med1 coding upstream 936495 5840203 ~ 5863290 (+)
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding upstream 1033942 5762494 ~ 5765843 (+)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding upstream 1099879 5691358 ~ 5699906 (+)
plcd3b plcd3b,LOC107751666,LOC107561636,LOC107662566 coding downstream 221446 7183430 ~ 7219444 (+)
nmt1b LOC107561637,LOC107662571,LOC107758416 coding downstream 263878 7225862 ~ 7233649 (+)
svild LOC107758427,LOC107675649,LOC107561632 coding downstream 271954 7233938 ~ 7292140 (+)
znf281b LOC107727698,LOC107584153,LOC107661093,LOC107594149 coding downstream 404350 7366334 ~ 7374805 (+)
muc13b NA coding downstream 416943 7378927 ~ 7385963 (+)
G86047 NA non-coding upstream 125715 6673340 ~ 6674070 (+)
G86046 LOC101886504,LOC101886427 non-coding upstream 128451 6670314 ~ 6671334 (+)
G86045 LOC101886504,LOC101886427 non-coding upstream 130336 6668924 ~ 6669449 (+)
G86043 NA non-coding upstream 225659 6573914 ~ 6574126 (+)
G86038 NA non-coding upstream 229817 6569713 ~ 6569968 (+)
G86095 NA non-coding downstream 45843 7007827 ~ 7009178 (+)
G86097 NA non-coding downstream 49204 7011188 ~ 7011412 (+)
G86106 NA non-coding downstream 133015 7094999 ~ 7095310 (+)
G86110 hexim1,LOC107733802,LOC107661096,LOC107662567,LOC107561639,LOC107751667,LOC107576140 non-coding downstream 167626 7129610 ~ 7173329 (+)
G86131 NA non-coding downstream 259544 7221528 ~ 7221955 (+)
G86029 NA other upstream 277214 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 358259 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 583218 6214919 ~ 6216567 (+)
G85962 NA other upstream 703053 6095948 ~ 6096732 (+)
becn1 becn1,atg6 other upstream 846299 5886952 ~ 5953486 (+)
G86142 NA other downstream 341154 7303138 ~ 7304848 (+)
G86143 NA other downstream 345940 7307924 ~ 7308229 (+)
LOC122355675 NA other downstream 853839 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 1143164 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 1233980 8195964 ~ 8197904 (+)

Expression


Co-expression Network