skap1 (skap1,LOC107666922,LOC107727295,LOC107669469)


Basic Information

Item Value
gene id skap1
gene name skap1,LOC107666922,LOC107727295,LOC107669469
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11905082 ~ 11932134 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254009.1
CATACAATCTCTTTGGGCACGTTTCATTTTCACCACAGCGTGCTTTGCActtcctcttcatcttctttCTGCCAACCGATTCTTGTGTGTGTGGATATCTCTTTCaattcctttttatttcatgctgtgAACTGATGCTGTGGGATGACAAGTGACCAACAAATTAATTCTGAATTTCTTTTACCTTCAATCGACATCAGCATATTTTATTACCCCTTATATCTGTTGGAGTCTTACAGAGTGAGATGGGTACGGTTGTTGATGACATCAGACAACTATTAAAAGacTGTGAGCTGTTTGTTTCTGAGATACTCCAGGATGAGAATCTCAGTATCCCTGCTCAAGAGGCCAGGGAAATTCTCCTGCGAAATTTTCATGTCATCCAAAAGAGACACCCACAAGAATTCCCCCACAGATTCGAGTCCAATCTTGAGGACAGCTCAGATGACAACCGCAGCTCCAGTCTGGGACGTTCTGCCCCCTCAGATGATATGTCAGTGGCCTCTGACTACCAGGAGGAAGGTGCTCCTGAACTTTTTGAGGAGATACCTCTGGTGGCTGCGCAGGACCTGGGTAACATCCTAAAACAAGGCTACCTGGAGAAGAAGAGACGTGatcaCAGTTTCTTCAGCATGGAATGGCAAAGGCGATGGTGTGTGTTAAACAAcactatattttattactttggGAGTGAAAAAGACAAGCAGCAGAAAGGGTCATTTTATATTAACGGCTACAGTGCGGAGCTGGTGCCCAGCTTACGCAAAGACTCTAAGAAGAATTCGTGCTTTGAGTTGAGCGCTCCTGGAAGACGCTCTTACCAGTTCACAGCCAGCAGTCCCCGTGAGGCCAGGGAATGGGTGGACCAGATCAATTTTGTCCTCAAGGATCTGAGCTCTAACTTCATCCCCTTtgatgatgaggaggaagaggaggtggaagaagaggaagagacaTATGATGACATCGAACGAGCTACCACACCTCCACCTCCACGTCCTGGACCAGCATCTGCACCGGTTACAACCCCAAATCTGGCACAAACCCCCCAAAGCAGCCGTGAAGAATGGAAGGACCAAGCAGGAACTCAagaagatgaagaggatgatgaagaggacGAAGAAGACATTTATGAAGTGCTTCCAGATGACGAAGATACTGACAATGCTGAAGAATGGGCTGAAAAATCTGgaaTTTCAGATTATGCAAATTATTACCAAGGCTTGTGGGACTGTGAAGCTGATGGACCCGATGAGTTGGCCTTCCAGAGAGGAGATGTCATCTACATCCTTAGCAAGGAATATAACATCCATGGGTGGTGGGTCTGAGAGCTGGATGGGGCTATTGGCATAGTCCCCAAGGAGTTTTTACATCCTGCTTATATTCTATAAGGTTTGCTTTTTGTGAAGATCACAGAATGTTAAGCGTTACAACACTTAAGCAGCGGTCATGGTTCGGAAGATGCCAATGATTCGATTAGAATGTAAAACCATTTCTAGAACCTAAACCCTGAGACCAAAACTCATTGCATATAAGCATTTTATGTCACATGAATAGTGTACACCAAGAAGCTCGTCTAAATCTGTCACGGTTTCATTTGTTCAAAGATGAGCCTCATTTCAGCAAATGGTGTACgtgagaaaaacatttgtaatgtaaaaactTCTTTTTAAACTTCTCATTCATCACAAAATCTATTCTCTTTCAACagcataaattattaaatacaattatttgtcTTAAGAA

Function

symbol description
skap1 Predicted to be active in cytoplasm and plasma membrane. Orthologous to human SKAP1 (src kinase associated phosphoprotein 1).

NR:

description
PREDICTED: src kinase-associated phosphoprotein 1

GO: NA

KEGG:

id description
K17699 SKAP1, SKAP55; src kinase associated phosphoprotein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254009.1 True 1746 mRNA 0.43 13 11905082 11932134

Neighbor

gene id symbol gene type direction distance location
hoxb1b hoxb1b,LOC107669476,LOC107552742,LOC107706871 coding upstream 7512 11879440 ~ 11897570 (+)
hoxb5b hoxb5b,LOC107706869,LOC107727298,LOC107666910,LOC107582850,LOC107669477 coding upstream 17961 11885009 ~ 11887121 (+)
hoxb8b hoxb8b,LOC107669483,LOC107706868,LOC107552737,LOC107727302,LOC107666913 coding upstream 29403 11873649 ~ 11875679 (+)
ttll6 ttll6,LOC107582749,LOC107666932,LOC107727303,LOC107669465,LOC107706894,LOC107552736 coding upstream 33308 11863622 ~ 11871774 (+)
LOC122355327 LOC107669484,LOC107666914,LOC107727294,LOC107552729,LOC107706895 coding upstream 43510 11835273 ~ 11861572 (+)
tmem106a LOC107706900,LOC107552767,LOC107669487,LOC107666933,LOC107727317 coding downstream 13937 11946071 ~ 11949632 (+)
arl4d arl4d,LOC107552768,LOC107706901,LOC107582746,LOC107727318 coding downstream 19717 11951851 ~ 11953983 (+)
dusp3a dusp3a,dusp3,LOC107669488,LOC107552769,LOC107666929,LOC107582744 coding downstream 39561 11971695 ~ 11981994 (+)
sost LOC107552770,LOC107706903,LOC107582741,LOC107743777 coding downstream 57147 11989281 ~ 11993628 (+)
meox1 meox1,LOC107706874,LOC107669480,LOC107666908,LOC107743797 coding downstream 113389 12045523 ~ 12051003 (+)
G87337 chmp2a,LOC106589279 non-coding upstream 81760 11822063 ~ 11823322 (+)
G87343 NA non-coding upstream 101455 11803287 ~ 11803627 (+)
G87341 NA non-coding upstream 104455 11800356 ~ 11800627 (+)
G87331 NA non-coding upstream 160677 11741981 ~ 11744405 (+)
G87285 NA non-coding upstream 408090 11484193 ~ 11496992 (+)
G87617 NA non-coding downstream 65156 11997290 ~ 11997512 (+)
G87621 NA non-coding downstream 135269 12067403 ~ 12067629 (+)
G87644 NA non-coding downstream 217289 12149423 ~ 12149637 (+)
LOC122355133 NA non-coding downstream 219018 12151152 ~ 12156922 (+)
G87664 NA non-coding downstream 225452 12157586 ~ 12157815 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other upstream 20985 11882151 ~ 11884097 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other upstream 203427 11694844 ~ 11701655 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 1322537 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 1405384 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 1408805 10481492 ~ 10496277 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 4707 11936841 ~ 11945635 (+)
G87817 NA other downstream 800630 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 828240 12760374 ~ 12762731 (+)
G88016 NA other downstream 1509809 13441943 ~ 13444915 (+)
G88082 NA other downstream 1663660 13595794 ~ 13596348 (+)

Expression


Co-expression Network