psme3 (psme3,LOC107669474,LOC107582747,LOC107706898,LOC107727296,LOC107666924)


Basic Information

Item Value
gene id psme3
gene name psme3,LOC107669474,LOC107582747,LOC107706898,LOC107727296,LOC107666924
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11932423 ~ 11936456 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254010.1
TATTTCCACACGACAGGGCAGATGTGACGGCTATGTATTCCCATCTATGGTCTCCGGGCGCTTACGTCATCTAGATGCGCGCAAGTGCCTTGTGGCTGACAGCAGTTAGTGAGCCACACGGTTAGTTAATGCTTTTAGGACAATCccttatttttctcatttattgaattaatacGATGTCTTCGCTTCTCAAGGTGGacaatgaaatcaaaacaaagGTTGATGCTTTCAGGGAACGAATTACAGCAGAGGCTGAAGACTTGGTTGCAAACTTTTTCCCGAAGAAATTGTTAGAGCTTGACCAGTTTTTGAAGgatccCACAATTAATATCCGTGAGCTGAAAGAAATTCATTCAGAGATCAATCTGACCGTGCCAGATCCAATTCTTCTTACAGACATCCACGATGGACTTGAGGGAcaaaatgctaaaaagaGGAAACTCGAAGATGGTGCAGGAGATGACAAAGTTGGCGGGACCAAGGTCTTTGTCATGCCTGGAGGAATGATGAAAAGCAATGGCAAGCTGGTAGAGCTGATTGAAAAAGTAAAGCCTGAAATCAGAACTCTAATAGAAAAATGCAACACGGTCAAGATGTGGGTTCAGTTGTTAATCCCAAGGATAGAAGATGGCAACAATTTTGGCGTCTCAATTCAGGAGGAGACGGTGGCTGAACTCAGAACAGTGGAAGGGGAAGCAGCTTCTTACTTAGATCAGATATCCAGGTACTACATCACAAGGGCAAAGCTGGTTTCCAAAATAGCAAAATACCCTCATGTTGAGGATTATCGTCGTACGGTGACAGAGATTGATGAGAAAGAATACATCAGCCTCAAGATCATAGTGTCAGAACTGAGAAATCAATATGTAACGTTACATGACATGATCCTGAAGAACATCGAGAAGATCAAGAGGCCGAGGAGCAGCAATACCGATGCTCTGTACTAAGATCTCCCTCCCTCCTTCATTCTTGGCCCGTTGTTCCACCATTTGGAGCTAGCTTTAGCCTTCAGGTGGTTTTAGAGCAGTCCTGTCACCCATTATTCCCAGGCCAAGAGACGGACCGCTCAATCAGGCCTGATAGAACATGCCACTTAAGATAGAAGTGTTAAATATGGTCACTATTTTAAACCCTTTAAAATGAGCCCTTTttgatttctttgtttcttaGCGGacagtataaatgtataaaggCAGAGCCTGAACATGCGTCCAGAGGAAACTGTctcagatttgttttttctttatttaattaaagaaacgTTTCAACAGTggacttcatttttttttttttttttttaatcttttgcaAAGCCAAATTCCATGTAGTTCTCCATTTTCAAGTGTTTCTGAGCCTCCTTAGGGGTTAAGTGGATACGGACCTACCCGTGATGGTCGGTTTCTCCGGTCGAGAAGCTCTTATTGATGCTGTATTTCACTAAAACAGGTTACGTTGTTCAACTGAAATGTACATGTAGGCTGAAGTGGAAGCGAGGCAGTTACTGTGCGAGATTTTATTTGGAGTGTGTGCTGACAGTTATTATATGATGGAATGTTATATTTTCATCCGAAATAACTGATACATCAAATTCTGGAAGCTTTTTATGGTTTCTTTTTGTCCAGTTTTAAGAGTGATACATTTTGCTGAATAAACTAttgtttttacaata

Function

symbol description
psme3 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME3 (proteasome activator subunit 3).

NR:

description
PREDICTED: proteasome activator complex subunit 3-like

GO:

id name namespace
GO:0008537 proteasome activator complex cellular_component

KEGG:

id description
K06698 PSME3; proteasome activator subunit 3 (PA28 gamma)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254010.1 True 1669 mRNA 0.41 11 11932423 11936456

Neighbor

gene id symbol gene type direction distance location
chmp2a bc2,chmp2a,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 109155 11820541 ~ 11823268 (-)
zeb1b zeb1b,LOC107706887,LOC107669492,LOC107552760,LOC107666916,LOC107582755,LOC107727309 coding downstream 190462 11685789 ~ 11741961 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding downstream 298540 11630324 ~ 11633883 (-)
kctd2 kctd2,LOC107666921,LOC107727321,LOC107582756,LOC107669473,LOC108410512 coding downstream 302535 11624098 ~ 11629888 (-)
slc16a5a slc16a5a,slc16a5,LOC107666920,LOC107669499,LOC107706881,LOC107582757,LOC107736668 coding downstream 311421 11612742 ~ 11621002 (-)
dhx8 dhx8,LOC107706906 coding upstream 167422 12103878 ~ 12112775 (-)
uts2r2 ogfod3,zgc:195081,LOC107743776,LOC107691211,LOC106959269 coding upstream 511580 12448036 ~ 12472207 (-)
psmd11b psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212 coding upstream 536433 12472889 ~ 12480834 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773,LOC107677861,LOC107675020 coding upstream 552313 12488769 ~ 12548929 (-)
LOC122355678 LOC107675002,LOC107754109,LOC107566636 coding upstream 613200 12549656 ~ 12552715 (-)
G87593 NA non-coding downstream 37911 11890934 ~ 11894512 (-)
G87552 NA non-coding downstream 131942 11799592 ~ 11800481 (-)
G87551 NA non-coding downstream 133080 11799005 ~ 11799343 (-)
G87547 NA non-coding downstream 141497 11753049 ~ 11790926 (-)
LOC122355534 NA non-coding downstream 352064 11579188 ~ 11580359 (-)
G87603 NA non-coding upstream 585 11937041 ~ 11937682 (-)
G87605 NA non-coding upstream 7616 11944072 ~ 11945631 (-)
G87607 NA non-coding upstream 10451 11946907 ~ 11947734 (-)
G87610 NA non-coding upstream 34073 11970529 ~ 11970824 (-)
G87659 NA non-coding upstream 214843 12151299 ~ 12151635 (-)
G87569 NA other downstream 96811 11832879 ~ 11835612 (-)
G87489 NA other downstream 609820 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 886534 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 925469 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1992574 9311653 ~ 9939849 (-)
G87608 NA other upstream 12084 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 712927 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 815448 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1487852 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 1587212 13523668 ~ 13540301 (-)

Expression


Co-expression Network