XLOC_006650


Basic Information

Item Value
gene id XLOC_006650
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007124.7
NCBI id CM002897.2
chromosome length 52186027
location 27271338 ~ 27277709 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013806
TGGAGCAGTGCTCATGCGCGGGGCTGCCATTCTCCATGGCAGTGGGGTTACGAGAGGATAGCTTGGCCAGACTCCAAGACACTGCATCCTCAATGGTTTGATCATCCAAAGCCATGTGGCATCGGATACCGTCCGCATCAAGCAGACCGGAGGAGTTCTTATTGCGGGCCGAGGGCACCAGGATGGGTTTGCTGAACTTTTTCGGTGGGGAGGATGAGGGAGATAAGGAAATGAAGGATGATCCCAATCTCCCCAGCAGGCTGGTCTTTTCCTGAGGTGTTTTGATCCAACAAACTGTTTCAGGCATGGTCTTCTGTTTGCGAagaactgctgatctgctggaaCCAAAACGTGGAGGTGGAGGCCTAGGCGGCGGTGATCTCTCGCTCTCAGATCTGCTCACACTTATGTGGGGTTTGCTTGGTGTTTTACGGCAGAATACGCTGCTGTCCCCTTGCTGCTGACCTGTTCTGTGCAGAGCTCTGTGGTGGTGCTGAGAGCCACCACCTTCGTCACCTGGGGATGGTTCTTGCTTTTTGGGTGAAGGGTTAGATTGGTGTGTCTGCAGGAAGAGGGGATTGATGAAGCAAAGTGCACCGTTGGATTGGCTGCATTCAAGTTCAGAAGGGGTCCGGGTAAACGGGACGGCTGGACTTCTTTTTAGTCTCTGTTTTGAACCATCACAAGCAGTTTCCCCAGACACAGAAGACTTGTTCTTATTGCACAGTTCCGAGTCCCAAAAACCTACACAAGATAAACACAATCATCTCAACGATGACATCTGAGACAAGAGCGGGAAGCCTTAACGTCACTCGGCTCAGGTCTGCTAAAGTGATATCTGTGCAGGAGTGGAATAACTGGAAATCTGCAGCTGTGTAAACAACTTTCACCCCCACTATCCCAGTCATTATAGACAGTCAATGAGCAGCTGGAATTTGGACTTGGTGGAGTTCCTTTTGGAAAGGATCCTAGTATGAAGCTGGAGTCCCCAAGAGCTACACTTGAGGGGACCTCATCACTACACTGCGtatgaagctgcggtcacacaggacttttctccccatagacctccattcataggaacgcgaatgcgtcagaccgggatcacaagctcatgcgacaagtttcacagttcaatcaatcgcatcacttgactgcttgagaccaaacaagatcaaaacatgacctctctgcacagaaattttaaatatggaccaatcgcttgcttttttaaatgtctaatcatcttgtttaatcccgccccttttcccaGTGC

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0048513 animal organ development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0007275 multicellular organism development biological_process
GO:0014904 myotube cell development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0009790 embryo development biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00013806 True 1276 lncRNA 0.50 4 27271338 27277709

Neighbor

gene id symbol gene type direction distance location
XLOC_006649 NA coding downstream 43588 27227361 ~ 27227750 (-)
XLOC_006648 ccdc85a coding downstream 232931 27000394 ~ 27038407 (-)
XLOC_006647 vrk2 coding downstream 472094 26780004 ~ 26799244 (-)
XLOC_006644 NA coding downstream 567534 26009497 ~ 26703804 (-)
XLOC_006651 ddx43 coding upstream 54947 27332656 ~ 27354033 (-)
XLOC_006652 kcnq5a coding upstream 101148 27378857 ~ 27621246 (-)
XLOC_006653 rims1a coding upstream 354217 27631926 ~ 27767443 (-)
XLOC_006654 CR356236.2 coding upstream 412451 27690160 ~ 27690276 (-)
XLOC_006655 NA coding upstream 523706 27801415 ~ 27816641 (-)
XLOC_006471 BX537274.2 misc downstream 17006433 10264741 ~ 10264905 (-)
XLOC_006338 rn7sk misc downstream 26445113 825904 ~ 826225 (-)
XLOC_006646 AL627132.1 non-coding downstream 704154 26567066 ~ 26567184 (-)
XLOC_006645 NA non-coding downstream 726522 26533354 ~ 26544816 (-)
XLOC_006643 NA non-coding downstream 1418027 25846532 ~ 25853311 (-)
XLOC_006658 CR392046.1 non-coding upstream 901725 28179434 ~ 28179550 (-)
XLOC_006661 BX950184.1 non-coding upstream 999189 28276898 ~ 28417158 (-)
XLOC_006663 NA non-coding upstream 1149768 28427477 ~ 28444818 (-)

Expression


Co-expression Network