acsf2 (acsf2,LOC107698803,LOC107706880,LOC107552752,LOC107727305,LOC107582759,LOC107675647)


Basic Information

Item Value
gene id acsf2
gene name acsf2,LOC107698803,LOC107706880,LOC107552752,LOC107727305,LOC107582759,LOC107675647
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11583162 ~ 11601481 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254023.1
CAGTTCGTAATATTTCCCTGCAAGCTGCTTTAGGTTGTTGTTAGCTCAACGATTAACTTTTGGGAACTTTGGGATCTCGGTGGCACGATCTTGGCGTTGCTAAGAAGCCGATTATTCATGAGTTACCATcgcaattaaataatatttcagggctactttttttaatgttattttaatgttatgtgCATTCATTTTACGTGTAAGCGTCAGGTCGTGTTTTGGGTACgtgtttttgttggtttgcTATAGCACCGagtttctgaattaaaaaaaaaactaaaataagattCGTCCCAGCTCACTTTTATTGcaaaggagaaagagaaagatgtcTTTTAAGATTCTTCTGACTAACCTACGAACGACCGCAAGCCACTGCAAAACACTGAATTTTTTGCAGAGACCCTGGAGTCCTTTCATTGCTTCTCAACAGAGTTGTGCCATTCATGTGGATGGTCCACCCAGCATCTCCACCCTGACTACCAGTTATGTCCACGGCATCTCCTCCCATTCGCTGCTCTCTAGTACTGCAGACCAGTGTCTTCAACGCTCAGTGGAGCTTTACCCTGATCGTGAAGCTTTGGTTTTTATGCAGGATGGAACACGCAAGACATTTTCTCAGTTCTACCAAGACGTGGAACAGACTGCCGCGGGTCTGTTGGCTGTTGGACTGAAGAGGGGCGATCGCTTAGGGATGTGGGGACCCAACATCTATGAATGGGTTCTTATGCAGTTTGCAACAGCTAAGGCAGGGATCATTTTGGTTTCAGTGAACCCGGCTTATCAATTGCAAGAGGCAGAATTTGCTCTCAGAAAGGTGCAGTGCAATGCAGTCGTTTGTCCAACCCAATTCAAAACCCAAAAGTACTGTGACATGTTAAGACAGCTTTGTCCGGAGATGGAGACAGCCTCTCCTGGAAGAATCAAGAGTTCAAAactaCCAGACCTACATACTGTGATCGTAACTGACAGTCAGCAACCAGGAGCTTTTCACTTGAAAGATGTGATGCAGGCAGGAAGCAGCCAGCACCTACAACAACTACAAGACCTCCAGAAGAAACTGAGTTGTGATGATCCCATAAACATTCAGTTTACTTCGGGAACAACTGGAAAGCCCAAAGGAGCCACTCTGTCTCATCACAACATTGTGAACAATGCTTATTTCATCGGCATGCGCATAGGCTACCACTGGAGGAAGAATGTGCGAATCTGCTTGCCGGTGCCCATGTATCACTGTTTTGGCTCGGTGGGTGGAGGTATGGTCATGGCTGTGCATGGCACCACAGTGGTTTTCCCATCCACCGGGTATGATGGACATGCCAACCTGGTGGCGATAGAGAAAGAGAAGTGTACGTTTGTGTACGGCACCCCAACTATGTTTATTGACATGCTTAGTCAGCTTGACCTGGCCAAGGCTGATTTGTCATCACTTGTGGGTGGTATTGCTGCCGGGTCTCCTTGTCCACCAGAGGTCATCCGTAAGGTCATCAATGTCATGGGTGTTAAAGAAATGCTGATTGGTTACGGCACAACCGAAAACAGCCCTGTGACATTCTGTGGCTTTCCGATTGACAGCACAGAGCGAAAGATAGAGACTGCTGGATGTATTTGCCCCCACACTGAGGCAAAAGTAGTGAACTCCGTTACGGGAGAGATCGTGCCTCTGGGTGCTCAGGGCGAGCTGATGATCAGGGGATACTGCGTGATGCTGGAATACTGGAACGACATTGAAAAGACCCAGGAGTGCATCACAAAAGACCGCTGGTACAGGACCGGTGACATTGCTACTTTGGACGGGTACGGGTACTGCAAAATAGAAGGGCGCATTAAGGACTTGATCATCCGAGGTGGAGAAAACATCTACCCTGCTGAAATTGAACAGTTTCTGCACACCCACCCCAAAATTCAGGAAGCACAGGTGGTTGGAGTAAAGGATGAGAGAATGGGGGAGGAAGTTTGTGCTTGTATTAGAATCAGGAATGGTCAAGAATGCACTGCAGAAGAGATCAAGGCCTACTGCAAAGGAAAGaTTGCCCATTACAAGGTGCCTCGCTACGTAACGTTTGTTCAGGGGTATCCTCTGACGGTCACAGGCAAGATCCAGAAGCACAAGCTGCGTGAACAGGCGGAAAAACTGCTTGGACTGTAATTGCAAAAGAAGTTACCTCAAGACATTATGAGTTTCTCAAATATATTGAGatttcattgttttacaagccatttttttatcattaaacgTTAGGATGTGTTTTATACATTGTTCATATTACTCTGTTTCTAAAAAGCTGCCAGTATCTACGTGTATCTTTTcttacttttctttattttgttattaattgtatttgaaaCCAAGTCATTTTCAGTCATATgaactaattataaaaaaaggaaattggTATCCAGAATATGCATGGTTACACTAAGTACACGGTTCGTTAGATGAattgaaatgttctttttaattgtattcttgaaaagaataaaagtaaatataaaagtaaa

Function

symbol description
acsf2 Predicted to enable medium-chain fatty acid-CoA ligase activity. Predicted to be involved in fatty acid metabolic process. Predicted to act upstream of or within lipid metabolic process. Predicted to be located in mitochondrion. Orthologous to human ACSF2 (acyl-CoA synthetase family member 2).

NR:

description
PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like isoform X2

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0005739 mitochondrion cellular_component
GO:0005524 ATP binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K23617 ACSF2; medium-chain acyl-CoA ligase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254023.1 True 2502 mRNA 0.44 16 11583162 11601481

Neighbor

gene id symbol gene type direction distance location
synpo2lb synpo2lb,LOC107706876,LOC107727319,LOC107700134,LOC107582764,LOC107552728,LOC107698791 coding downstream 32737 11536670 ~ 11550425 (-)
myoz1b myoz1b,LOC107700112,LOC107706866,LOC107727320,LOC107582765,LOC107552748 coding downstream 48209 11529051 ~ 11534953 (-)
usp54b LOC107698809,LOC107706875,LOC107720824,LOC107582762 coding downstream 54908 11440769 ~ 11528254 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding downstream 162956 11394257 ~ 11420206 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding downstream 190772 11375795 ~ 11392390 (-)
tap2t si:dkey-57h18.2,LOC107582758,LOC107727316,LOC107657063 coding upstream 5543 11607024 ~ 11612294 (-)
slc16a5a slc16a5a,slc16a5,LOC107666920,LOC107669499,LOC107706881,LOC107582757,LOC107736668 coding upstream 11261 11612742 ~ 11621002 (-)
kctd2 kctd2,LOC107666921,LOC107727321,LOC107582756,LOC107669473,LOC108410512 coding upstream 22617 11624098 ~ 11629888 (-)
hexdc LOC107669475,LOC107706886,LOC107552734,LOC107727297,LOC107582853,LOC107666907 coding upstream 28843 11630324 ~ 11633883 (-)
zeb1b zeb1b,LOC107706887,LOC107669492,LOC107552760,LOC107666916,LOC107582755,LOC107727309 coding upstream 84308 11685789 ~ 11741961 (-)
LOC122355534 NA non-coding downstream 2803 11579188 ~ 11580359 (-)
G87414 glud1b,LOC107700126,LOC107739271,LOC107582816 non-coding downstream 264241 11316383 ~ 11318921 (-)
G87417 NA non-coding downstream 267164 11312472 ~ 11315998 (-)
G87409 NA non-coding downstream 284628 11259017 ~ 11298534 (-)
G87547 NA non-coding upstream 151568 11753049 ~ 11790926 (-)
G87551 NA non-coding upstream 197524 11799005 ~ 11799343 (-)
G87552 NA non-coding upstream 198111 11799592 ~ 11800481 (-)
G87593 NA non-coding upstream 289453 11890934 ~ 11894512 (-)
G87603 NA non-coding upstream 335560 11937041 ~ 11937682 (-)
G87489 NA other downstream 260559 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 537273 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 576208 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1643313 9311653 ~ 9939849 (-)
G87569 NA other upstream 231398 11832879 ~ 11835612 (-)
G87608 NA other upstream 347059 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1047902 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1150423 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 1822827 13424308 ~ 13432195 (-)

Expression


Co-expression Network