jcada (si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409)


Basic Information

Item Value
gene id jcada
gene name si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10507843 ~ 10516992 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254025.1
CGTTTTCTTTCACAGCGATGGCCTCTCCTGTGCAGCTGTTCATGAGCTTGCCTCATCTGGACTAGGAGCGGAATTCATCTGACACTCACacaggcacgcacacacacacacacacacacacacacacacacacaccactaaaagcaaaaacacaccGCTTAGCCATGTACAGCGTGGAAGACCTTCTCATCTCTCATGGATACAAAGTCCCTCAAAGGAACAGCAACAATGTCCCTGTCTCACATTCGTCTTCCCCCCACCCCGCAACCTATGAGAAATGTCTGCCGACACGAAGCGACAGCCGGTGTGAAATTGCTGAGAAGCGTAAAGGACACAGCGGCGTGAATGGCTACGAGGGGGACCATGTTTACAGCGGCGGAGGCATCAGACAAGCTCCTGCCAGGGGATTCCCCGGTGACGCCGAGAACAGGGTCAGGAAGCAGAGGACACAAGACGTGGACAACGGTAACCTAGGAGATGGACGTTTGCCTGAAGATAGCCTGACCACGGACAGTGGGTTTTTTGAGACCCACAGAGGAATACATTCACAACCTAGATCTGAGCAGGATGTGTCCTACTGGCGAAGAAGAGGTCAGGACTTTAGTGTGCTTTTGGATTATGCAGACTTCAGGGACCCACGTGGAAGTGGAGGAGGGGTTCCCAACAAACCAGAAGGCATGCAACGGAGACCAGAATCTGCCTTAAGCACAGAGGAACATAACCGTGAAAGACAACGACGGGCAGAGAGTGCACGTgccagggagagagagatggctCTGCACCAGTGGAGAATTGCAGCTGAAAGGAAGTACCAAAGTTTGGGAACAGAGGAGTGGCGCCCAATGACCAGCATGAGCCGCCAGCCATCCGAAAATGAGGTGGCACAGGAGCAACGCAGGCCACGAACTGCAGAAGGAGCTGTTCCACCTAGAACCAAAAACAAGTCCCAGTCACTACCCAGAATGGCTCTTCAATCTGAAAGCCTCCAGTACTTTAGCATACCAACTGCTGGGCAAGACTCATATGGAGGCTATAAGTTAAATGGCCATCATACACGAGACCCTCATGGACGGCATCTTAATGATGGGGAGAACAGGCAGCGGTGGACTGACCGATCAGGAGCGCAGTCCGCACCACTATCAAAACCCAGATTTAGCCGACCGCTCAGACCTCCATCTTATGAAGTGCACCAGCAGATGCGTGGGAGCGCAGAGATGCTCACGGGGGAGCCTGCTCCTCGTGCAAGAGACAGAACTCCACTGCCCTTCTCAAGGCAGGAGTACTTTGTACAAGAACTGGCTGGATCTGGTGTGGAGCCCCCCGGTTATATCCCTCCTCCATCCTACAGGAGGCAGCCTGTAGTTAATAGAGGTCACAGAACTTATCCTATCTCTATGGGTAACCACCAATATAGAGGTGACCCATATATGCAGGGTTCTGCGATGACAGAAGTGCAGGAATGGTTTATAAGGCAAACTGGGATGGCTTGGCCAGATCATTACAGGGATGGAAGGAGAAGTATGCCCTGCAGGAGACAGGCGTATCCAGGCTACAGTGAAGAACGAATGGGTAATGTTCAGTACATTCCCTTTGACGACCCTCGTGTCAGACACATTTCAGGAGCAGGGATAGATGGAAACTCGTTGACGGATGCAGACAAAATCAGAAACATCAGGAATGAGATTCCGGTCAACCTCTTATCTGAGAAATCTAACGACAGTGCCTTTACTCTCACAGAGAAATCCTTTGACCGCACTGAACCATGTAAAAGCAATATAAGTGACTCTGTTAATGAGGACAGTATACACAAGGAAGTGCTGAAGGAGACAGAAAGTTCAAACACAATACCTGACCAAAACTGCAACAGGCATCCAGCTACCCATGGAAATATAGTTGCTCTTCAAATGACAATGCAACAGAACTCAAACCAGGGTTTGATTGAGACAGTGACACAAGTAAAGAAATTTGAGGCAAAAACTGTGTCTGAGAACAAGAAAAACTCCAAGAAGAAGCTCAAAGAAACAATGTTTTGCCTTGTATCTGTCCCTATTAGTATGCAAGCTAACAAAAGTGTGTCTGACccaaataacaatgaaaaattgACAAATTCAATAGAAAACACAGTGGGGCAGCATGACAaccaaaaccttttaaaaacatcaagcaAAGAGAAACGAATACAGTCCAGCAGCTCCCCCTCTATTAAAAGTTCCCCTCTGAGGAAAGAGACTGTAGATACAAGGTCCCTTAATCCAAGCCAAGACAATGAATTGTTCTGTCCAGGATCCTGGCCTGGAGATCAGTACAGAAACCAGGAAACTCAGACGGGTTCTCCAGAAGTATCCAGAAATACCCATCCTCCGACAAATGAACATTCCTCCCCTTACACGATCACTGATAATGAAGGTGAAACCAACTGTAGTGCCAACTACGGATATCCTATGATAGGTCAAAAGGATCTCAACCCTTCCAGCAACAGTGCATTCTCCCGAACTAGAACTGGAAGTAGTTCAAGTATAAGGAGCCCAACTCTACCCCAATCATCATCAGTTCCGCCATCTCCAGACCGTCAGCCTTTGCTGAGAAAGACAAACCAAACAGCAGATGGTCAAGAAGTTTTTGGACAGTTCTTGCTAAAGCCAGTGAACAGACGAAAATGGGATGCTATCGGGGAGCTTGAGTCTTTTAATAAGGAGATACAGGATCATACTGGGAAGTATCCAAATGTTGACCAGAATATAGAAGAGCTGGATGAGGCATTGAATAGTATTCTAGAGCTGAGTGACTCAAGCAGAGACATCAATAATACAAGACAGGAAACCACCACCCTCCACACGAAGAAGGAAACTGACCAGCAGTCACATATAGTGCAGGTCACAGAGACGCAAATGAAAAGCAATAACTTAAATGTAATGTCAGATTCTGGGAACAGAGGCCATCCAGAatacaaaagtataaaaagttCCAAGGCAAGGGTGAACTTGGACAGCCAGAGACAAAAAATACCCATCACTAAATCTGATAATTATGTCAGCTTTGAGATTCTGCAGAGGGGAGACACTGATCCAGCAGTACATCGGCAGGATATCCCAGTGCCAAAAGAGTGCTTGCTTAAGGATGTTGGTTTAACGGTATACACTGCCATTCCAGACACTGTGACCTCTGGATCCCCTACCTGCTTGAGTCCTGAGTCACCTATGTTAACTAGCCCCTCTGACAACTCAGAGATGTGTGAGACTTTGCAGATTACGTCATCAGACAGTAGCGGAGATTTAAGCAGGCACAGTCCTGAGTATGCTGAAGGTACTCAAAGCTTGAACAATAATAATGCCTTCAACTCCAAAGCCCCCAACAAGAAGGAAGCTGGGGAAAACCCAGATGTTACAAGGTCCTCACGTATACATGTGATCAAGAGTCTTCATTGTAGGTTTAAGGCTAAttatgaagatgatgatgatgatgacaattGTTATTCAGATTATTTAAGTTGGAGTAATGAAAAGACCTTGGCAGATGAACACCTTGAGACTCTTCTGAGTCAAGAGAAGGCCAATAGTATGCAGAATGAAGACCTTAGTAACCTGTACCAAGTCCAGTGTGCCAAAGGTATTCCTGAAAATGAATCCATTGAACAACGGGCTGCCAGAATACTTGGCATTGAAGTGCCAGTTGAAGCTTTGGTTGTTGATCAGGATGATGACAAACTGGTAGAAAGAAATTTGAAAACCACAGATGTTCCAGAATTGGCAACACAAACCAAAGAGTTGAGCTTAAATGAGGACAAACAGAATGTCAGTAGAGAGTATGAGGAAGTGCCAGACAGGTCTATGGAAAGTCATGAAGATATGTCAGAGGTAGGATTTGGAGGAGATCCAGAGTCTGGAGAAGATTTACTTAGCGCTGAAAAGCATAGCCAGAGAGTCTCCTCTGTGTTGGAGCTGCCAGAGTTTCCTCCAAGTAACTTATGTTTGTCGCTTCCACTGACCGAGGATGAGGAATTGACTCTTAGTGTAGGTGGGGGAGAATGGAAGGAGACAGTTAATTCTGAGATAACAGAAGTACCACATGACATGCAGGCATATTGCCCACCTCCTCTGTCCCCCTCATCCACAAATGATCAGGCATCCCTGGAGTACACCGTCTATGCAAAGGAGGAAAGCTGTCAGTCATTAGTGAGAACTATTACCAGGATCACCTTGGCCAAAGAGACAGGCTTAGAAGAAAAGGGAGGAGAACTAAAAGAGTCAGTTAAAGGGGATGAAACATTAGTGGAAAAGAACCAATACAGTGAGAATGCAGtcagagaaaacaaagacacgTCCAGTTATATGCAAGAAGAGGATGAACAAGCTCAGGAGGAAGTTTCAGCTGAAGAGGTGATACTAGCAAGATCAAGGCAGTCACCAAAGTCATTGGCACGTCCAGTCCCACAACCCCGCAGTGGCATGGTAGCAAAGAGAGAGATCACTCTGCCACAAGGATTCAGCATGGATAATACAATGTCTGCAATTGAGGATGATGACAAGCTGTTTATTTCAGATGCATATGACCCCAGTCGTGTGGAGAGAGTCTGATCTTGGACACCATCCAAGCAAACTCTTTGACCTTACAGGAATACACgatgtaaacaaacactaatCTGAAACTGGACATGATGCAGGCATGGACTcaatttattaatgcataatcACAGAAGTTCATAAGCAGGCAGATGGACTTCATGCCACATATTAAGACTAATTTTCAGACCTTCTATGGCCTGTTGATGGATGAAGTAGCAAAGTTGTTTATCAAAGAGATATGAATGTATCAAGTAAAGCTCAGACATTACAAAAATAGCTACAAATCGGTCTGTATAGACTATAGTTTCTCTGCACCAGCAAATGCTGGAGTTCTGTCGGACTTTCACAGAACACAGTGTCATTGTGCCAACAGCGACAAGAAAGACACAAAAGCTTGCACTTCTCATTTTCTGCAGTATTACCAATGAGAGAAAGGAAAGATGCCTTGATGTATTAAAGCAATGAACTGGACTGGCGAGGTAGCAGCTGAATCGGTGACATTACACTGTGCTTTTAATCAcagagaaatatttttgtaagaaatgttAAAAGGAAAGTGTGATTATCTGTTTTACAGGTGGGAGAAACCATGCGTGTCACTGTGGTAAAACTgcaatataaaatcatattttttgcaaatgGAATAGGCTGCTTTTACCCAAATGAGGCAGCTAAGAAGAAAGCTGCACAGAGGCAAagatttaagaatattttgtgTGAAGTCTTGGTCTCTAGAAACTTTAATCTTAACTGCAGTGTCTTCAATAGTCAGTTCCCATagttattgctttaaaatgacttccTTCACTCAAGATTTTTATATATCTCATATGCAGTTTGAGCTTTTCAGTGTAGCAATCTGATAATGTATCATCTCATCACGAaatgcaatcaaaaaaaaaagaaaaatgtatttatttttatcaagcTATCAGTCTGTAcagatgaaaatatatattcaaaaaaagtgtttttattttaccttgtgggtttgtttgcttgcttaCAATCATTATGGATATATCATATCTGAATATGTCTATTAATCCTGTATTACTCGGACAATGAATGATTCTTTTATTGTGCCGTGTGGCGTGCTTTTTGTTGCACAAATGTCAGAAAGTGTTACATGTGTTTCTTTATGCACATACAAAGTATTCTGCGTTTTAAGTCCAATATCAATTCTGAAAGCTAACTCCTATTGTGAGTATATCTACGGGACGTAGTGCTTGTTAATCACTTTACCCTTGTAATTGTTCGGTTGCTTTCTGTTATGACTCAACTGGATACGCTTCCTCAATGTTATATCCATCACatagttttataaatgcaatcaaAAGTGCACTAAAATGAATTTAGTATTTAGCACATCCAAAAACTGGCGACAGCGGCCAAAAACTCCAAAATAAAGTCATTGCATCCATTTACTCTGAATATAGTTATTGTTATGGATAAAGAGTGCAATACCATAATGTTATTATTGTCAATATATCCCATAAGCGTAATAATAAACTATGAATTAAAGCAGATAAATGTTCTATAATCAGTGGATGGTTAGAAAAAATATAAGGCATAGCATTCATCACACTTACTTTTTGTAAGTTAGAATCAAGTAATTGTTGTAAGTAGTTCTTGATTGTTTCTACcattttgtacaattttgtttttcaaaacgGATGATTATATTGTTGCATATAACGTATATGGCATTTAAtatctttttctattttcatacaGAAACTGTACATGATTATTTTGTATTGGGTTGGAATTGATTTGCCTTCTCTGCATGATATAAGAGATGTAAACTGGGGTCaggaaaatgttttgcatacaaCTGCATTTGGTAccacattaaaattatattcattatattacatGGTGCACATTTTTATCCtgctaaaaaaatgatatttaaattcaaaacaagctattttttgaatattttacagaaaGGGAAGTATTTACTGTGCACCTCAGTACTTGTGTCTTTGAAGTATTGGGTGAATGTTGAATGAAATGTTTGAGAGGAAAATTCTTTGTATATTATAGCAGATTGCTCATTAATAAACTCCTTGCATGga

Function

NR:

description
uncharacterized protein LOC110535552

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254025.1 True 6646 mRNA 0.42 3 10507843 10516992

Neighbor

gene id symbol gene type direction distance location
LOC122355261 NA coding upstream 626831 9877616 ~ 9881012 (+)
LOC122355282 shisa9b,LOC107596862,LOC107550297,LOC107703332,LOC107674610,LOC107709140 coding upstream 727173 9774372 ~ 9780670 (+)
LOC122355279 cdca9,LOC107733465,LOC107657294,LOC107584382 coding upstream 834529 9671521 ~ 9673314 (+)
si:dkey-219e21.4 LOC107657292,LOC107733464,LOC107584381,LOC107665876,LOC107738992,LOC107556571 coding upstream 838741 9665352 ~ 9669102 (+)
si:dkey-219e21.2 LOC107556575,LOC107738991,LOC107665865,LOC107733449,LOC107657266,LOC107584401 coding upstream 854457 9648751 ~ 9653386 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding downstream 68090 10585082 ~ 10609150 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding downstream 97201 10614193 ~ 10620486 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding downstream 190906 10707898 ~ 10864445 (+)
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding downstream 371141 10888133 ~ 10897280 (+)
calm2b calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206 coding downstream 427761 10944753 ~ 10949041 (+)
LOC122355662 NA non-coding upstream 408902 10078468 ~ 10098941 (+)
G87095 NA non-coding upstream 546885 9960647 ~ 9960958 (+)
G87094 NA non-coding upstream 547874 9959738 ~ 9959969 (+)
G86984 NA non-coding upstream 852566 9654959 ~ 9655277 (+)
G86981 NA non-coding upstream 885491 9619682 ~ 9622352 (+)
G87181 NA non-coding downstream 372426 10889418 ~ 10889625 (+)
LOC122355308 NA non-coding downstream 399194 10916186 ~ 10939829 (+)
LOC122355200 NA non-coding downstream 437666 10954658 ~ 10955795 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding downstream 464286 10981278 ~ 10987710 (+)
G87210 NA non-coding downstream 479738 10996730 ~ 10996994 (+)
LOC122355633 rhoq other upstream 8145 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 11566 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 608842 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 633328 9864814 ~ 9874515 (+)
LOC122355274 shisa9a,LOC107584108,LOC107734251,LOC107669237,LOC107554036,LOC107731434,LOC107692077 other upstream 740615 9757247 ~ 9767228 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other downstream 6151 10523143 ~ 10582545 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 1177852 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 1365159 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 1419849 11936841 ~ 11945635 (+)
G87817 NA other downstream 2215772 12732764 ~ 12737649 (+)

Expression


Co-expression Network