avl9 (avl9)


Basic Information

Item Value
gene id avl9
gene name avl9
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5703313 ~ 5733288 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254045.1
CTCACTGACGGTCAAGGGTGCGGAAGTTACAGACTCTACAGAGCAATcgcttgttttattgtttttttccttgtcTTTTGGACTTTATTCTAATTTTTACTAAGCTGATGGAGTCTCAATGTAAAGAGGAACTCGTGTTGCACATCGTGGTGGTTGGATTTCACCATAAGAAGGGCTGTCAGgtagAATTCTCATATCCTCCCATTATTCCTGGGGCAGGTCATGACAGTAATACACTCCCAGAAGAATGGAAGTATCTGCCCTTCCTGGCATTGCCTGATGGAGCACATAATCATCAGGAAGATACTGTCTACTTTCATTTGCCCCCTCTGGATGGACAGCAGAAATGTGTTTATGGAGTTTCTTGCTACAGACAGATGGAGGCTAAGGCACTGAAAGTACGAGAGGCAGATATCACAAGAGAGACAGTTCAGAAGAGTGTCTGTGTTCTCAGTCGATTGCCACTGTTTGGTCTGATACAGGCTAAACTTCAGCTCATAACTCACGCTTACTTTGAAGAAAAAGATTTCTCTCAGATCTCTATTCTAAAGGAGCTCTATGAGCATATGAACAGATCTTTAAGCTGTACAGCGCTGGAAGGATCACAGATTTATCtggGTCTTTCTGCCAGAGATTTGATTCTGCACTTTAAACACAAGGTTCTGATTCTCTTTAAACTGATTCTGCTAGAAAAGAAGATCCTATTTTACGTGAATCCAGTGAAGAAATTGGTTGAAACCCTGATGACAGTCCTGTCATTGTTTCCAGgtataATAGAGCATGGACTGGCAGATTCATCTCACTATCAGCCCCGGAAGAGCTTTTCAGATGACTTCAGTTCACCAGAAGTCATATCTGCAGATGAAGAGTCATTCACTATGTCCGCTACAGATAATACAGACATATCAAAAGATCTTGAGGGCAGGTATGATCGTGACCAGCCGGATCAGTCAAAGCCTTGTAACACCTCTTTGGAAACACACTACCTCCACCCTCATGCAGGAAGCTTGACGGACTCAGAGTTTGAATGGGAGAAGCTGGAGCCTCATGTAATGGATGAGAAGGAAGAGAAAGTAGACGCAGATCATTCAAATATGTTTGACACAGATTCAGGGCTGCCAATAACAGTACAGCCACAGTCGGCAACAGGACAGGGAACACTGACCTCGGGTCTGGTGTCTGGGTTACAAGAAGACCAGTATGGACTACCACTTGCTATCTTTACAAAGGGTTACTTGTGTATGCCTTACATGGCACTCCAACAGCACCACCTGCTGTCAGACATAAGTGTTCGAGGTTTTGTTGCTGGAGCAACCAACATCCTCTTCCGTCAGCAGCACCACCTGAGTGATGCCATCGTGGATGTGGATGAAGCTCGTATTCAAATCCATGACCCAGAGTTACGCAAAATGCTGTATTTAAGCACAGCTGATCTACGATTCGCTGATTATCTATTAAAAAATGTCACTGAAAACAAAGAAGATGTGTTTCTGGATGGGACAGGCTGGGAGGGTGGAGACGAGTGGATACGGGCACAGTTTGGCCTCTATGTCCACTCACTGTTATCTTCTGCTCTACAACAAGatcaTGAACGTCTATTGGCAGATTATGGAACTGCATTCACATCCGCCTGGAAAATCACACACAACTACAGAGTGTGGATCAGCAATAAGCATCCAGCCATGGCCAATATCACACCAGGCCATCCATTCCAGGGTCAGTACAGTGTGGCTGATATGAAGATCCGCTTGTCACATTCAATGCAGAACAGTGAGCGTGGGAAGAAGATTGGGAACGCTGTAATGTCGACAAGCAGAAGTGTCGTGCAAACAGGAAAGGCTGTTGgtCAGTCAGTAGGTGGAGCTTTAACCGTTGCTAAATCAGCCATGTCATCCTGGTTCTCCATGCTGGCTCAGCCGACTGCAGCGGTCGGTGCATCTGTGAGTGCATCTCCACAGTCTGCAGATTGATGTCTACTGTTGTACAAAATGATGAAGACAATATTGCACATATTATATTGCACATCTATTATTATATGAAAACGAGGAATGTTATAAGGCAAGAGagaataagattaaaaaaaaaaaaagtaaaataaacagatatcttgattttacattttgtacttGTAGTAGTTGTAATGGTAATAAGTTCTTGTAATGGTAATAAATACTGGAATAATGAAAGCATTTTCTTATTTCTGTggcaaaatgcattaattttagGTTTTCAGTTTGGGTTTGTTTAGGTTTTGGGACTCACCTTTTGTAAATCTTGAAGCCTGTCTATTTTGAGATCAGGTAACCAAAtgtttttatagatattttccTACAAATTATGACATGCATAATATCTAATGgcatatgaaaaatataataacattatagtCGCAATTGTTTTATCGTGCTTGTTGAAGAAGGACAACGtccatatatacaaataaaaacagtgacaCTATAGAGTTTGTTCATAAATTGGACCTTATCTGTGGTCAAATCAAATCCTGTAACACAATAAAGAGAATgaaatttaa

Function

symbol description
avl9 Predicted to be located in recycling endosome. Predicted to be active in cytoplasm. Orthologous to human AVL9 (AVL9 cell migration associated).

NR:

description
PREDICTED: late secretory pathway protein AVL9 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254045.1 True 2533 mRNA 0.41 16 5703313 5733288

Neighbor

gene id symbol gene type direction distance location
buc2l NA coding downstream 12924 5685526 ~ 5690389 (-)
aclyb LOC107727950,LOC107556756,LOC107674696,LOC108431393 coding downstream 44368 5628746 ~ 5658945 (-)
klhl11 klhl11,LOC107694394,LOC107556757,LOC107551837,LOC107674689 coding downstream 76376 5621138 ~ 5626937 (-)
dbf4b LOC107556759,LOC107727974,LOC107674674 coding downstream 90106 5602681 ~ 5613207 (-)
adam11 adam11,LOC107716458,LOC107653271,LOC107727973,LOC107674663,LOC107551824 coding downstream 102650 5564608 ~ 5600663 (-)
sult1st6 sult1st6,LOC107674799,LOC107708285,LOC107574469 coding upstream 3304 5736592 ~ 5746530 (-)
pkmyt1 pkmyt1 coding upstream 14989 5748277 ~ 5762611 (-)
mylpfb mylpfb,LOC107571443,LOC107674915,LOC108443170,LOC102793118,LOC101482131,LOC108274226,LOC102196412 coding upstream 141797 5875085 ~ 5878221 (-)
neurod2 LOC107571318,LOC107676581,LOC107732719,LOC107701796,LOC107568320 coding upstream 284703 6017991 ~ 6022156 (-)
LOC122355417 adprh,LOC108411014,LOC108274007,LOC105894051,LOC107726130,LOC106579059,LOC107571852 coding upstream 464194 6197482 ~ 6280348 (-)
G85572 NA non-coding downstream 1250037 4452755 ~ 4453276 (-)
G85569 NA non-coding downstream 1291113 4411340 ~ 4412200 (-)
G85553 NA non-coding downstream 1390265 4312579 ~ 4313048 (-)
G85551 NA non-coding downstream 1391409 4311453 ~ 4311904 (-)
G85545 NA non-coding downstream 1418378 4275337 ~ 4284935 (-)
G85889 tgfb1i1 non-coding upstream 77369 5810657 ~ 5814446 (-)
G85891 NA non-coding upstream 87061 5820349 ~ 5821178 (-)
G85892 NA non-coding upstream 104084 5837372 ~ 5837674 (-)
G85893 NA non-coding upstream 105271 5838559 ~ 5838957 (-)
G85922 NA non-coding upstream 224290 5957578 ~ 5957779 (-)
lsm5 lsm5,LOC107653262,LOC107727957,LOC107674592 other downstream 276802 5423084 ~ 5426511 (-)
G85779 atp2a1l,LOC107551849,LOC107716472,LOC107653256,LOC108274121,LOC107094295 other downstream 306401 5322478 ~ 5396912 (-)
LOC122355055 LOC107668612,LOC107583503,LOC107750859,LOC107717092,LOC107671135,LOC107559032,LOC107552862 other downstream 1286416 4412573 ~ 4416897 (-)
trnal-uag_71 NA other downstream 1306820 4396412 ~ 4396493 (-)
trnal-aag_72 NA other downstream 1310158 4393074 ~ 4393155 (-)
G85925 NA other upstream 251701 5984989 ~ 5987780 (-)
G85930 LOC107711793,LOC107755027 other upstream 257625 5990913 ~ 6012111 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other upstream 317880 6051168 ~ 6078068 (-)
G86049 LOC101886504,LOC101886427 other upstream 937031 6670319 ~ 6671247 (-)
G86108 NA other upstream 1370592 7103880 ~ 7104218 (-)

Expression


Co-expression Network