si:ch211-217a12.1 (si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406)


Basic Information

Item Value
gene id si:ch211-217a12.1
gene name si:ch211-217a12.1,LOC107674759,LOC108431403,LOC106590406
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 5668900 ~ 5684328 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254046.1
ATCCATAGAGGCCAAAGTCGACTTGGAAATGTCCTGGAAACTTTCCTTGAATAGAACGGAATGAAAGGGGTGGGCAGGAAAAAGCTCTGATGTCGTATATGAACTTCACGTTGGTGGAGTTGTCTTTTAAACTgtgcacagaaaaaaaggaagaagagtGGATTTAATAACTGGAAGACTTTAATGATCAAAGGTGATCAAATAAGGTGTACACCGGAAATTCTCTGAAAAGCAAAACACGGAGATATGAGTAAGAACGGCCGTGAGTACCGCGAGAGGGTGCTGACGGTGGACACTATGAACCCTAACGTTAAACGCGTGGAATACGCTGTACGGGGTCCCATTGTCCAGAGGGCAGTTCAGATCGAAAGAGAACTCAAAATGGGAATAAAAAAGCCATTCACAGAGGTCATTAAAGCCAACATCGGCGACTGCCATGCTATGGGCCAGAAACCCATCACCTTCTTCAGACAGGTCTTGGCTTTGTGCTCTTATCCAGATCTTCTTGAAGACAGCAAATTTCCAGAAGATGCCAAAAGTAGAGCTCGCCGCATTCTTCAAGCTTGCGGAGGAGAAAGTCTCGGTGCTTACAGTACTAGTCAGGGAATTGAAATGATTCGGCAAGATGTCGCACACTACATTGAACGGCGAGATGGAGGAATTACATCTGACCCTGACAACATTTACTTATCCACAGGAGCCAGTGATGCAATCGTGACCATGCTTAAGTTGCTGGTGTCAGGGGAAGGATTATCTCGTACAGGAGTGATGATTTCCATCCCTCAGTATCCTCTGTACTCTGCTGCTCTGGCTGAGTTGGGTGCTGTACAAATCAGTTATTATTTGGATGAAGACAACTGCTGGAGTTTGGACATCAGTGAGTTACGACGTGCCCTGCAGGAAGCTAAAAAGCACTGCAATCCTCGAGCTCTGTGCATTATTAATCCTGGCAACCCCACAGGTCAAGTGCAAAGCCGGCAGTGCATTGAGGACGTGATCCGATTTGCTGCAGCAGAAAACCTTTTCCTCATGGCTGATGAGGTCTATCAGGACAATGTTTACGCAGACGGGTGTAAATTTCACTCTTTTAAGAAGGTGCTGTTTGAAATGGGTCCGGAATACTCTGAGAAAGTGGAGCTAGCTTCGTTTCACTCAACATCAAAGTGCTACATGGGAGAGTGTGGTTTTCGCGGTGGTTATATGGAGGTGGTAAATCTAGACCCTGAGGTGAAAGTTCAACTCACTAAGTTGGTATCTGTACGGCTATGTCCTCCAGTGCCTGGACAGGCTCTTCTAGACGTGGTGGTCAATCCACCCCAACCAGATGAACCCTCATATGACACATTTATCAAGGAACGCAAAGATACTTTGGACGCACTGGCAGAGAAAGCCAACATGACACAAGATATCTTGAATCAGGTACCCGGAATAAAATGTAACCCAGTTCAGGGTGCAATGTACACTTTCCCATGCATCTACCTTCCACCGAAAGCCATCCTGGAGGCCAAGACGAAGGAACAAGCTCCGGATATGTTCTACTGTATGAAACTTCTGGAAGAAACAGGCATCTGTTTGGTTCCTGGAAGCGGCTTTGGGCAGCGAGATGACACCTACCATTTCAGAATGACCATCCTTCCCCCAAAAGAGAAGTTGAAGATAGTGTTGACAAAGATTAAGGAGTTTCACAAGCATTTTGTGGACCAGTACTCCTAACCCTGCCATCTCATTCTGACAAATTGACTAAATACTTAATTTCACTCATAAAGCTACAGCACTTCTAAATATGTGCTCTGGAAAAATGCCTGAAATGCAAATTTAGTCCCGTGTTGCAGCTCACAAAGTGGGAGTTAAGCACAGACATGCTGAGTGTACACAATGTAGTCACAGGCTCATCCATTAAACTTGTcagatgtttatttcttttaatagtgcgtattaaatgtttttgttaactgTA
>XM_043254047.1
GTACTGTCCTTTATCTATATACCACATTTCTTAACTTTCCCACAAGCGCTGTTCCATGGGCTGCCACAGAATCAAGAGAGGGTTAAGAAGTATAGGTGTACACCGGAAATTCTCTGAAAAGCAAAACACGGAGATATGAGTAAGAACGGCCGTGAGTACCGCGAGAGGGTGCTGACGGTGGACACTATGAACCCTAACGTTAAACGCGTGGAATACGCTGTACGGGGTCCCATTGTCCAGAGGGCAGTTCAGATCGAAAGAGAACTCAAAATGGGAATAAAAAAGCCATTCACAGAGGTCATTAAAGCCAACATCGGCGACTGCCATGCTATGGGCCAGAAACCCATCACCTTCTTCAGACAGGTCTTGGCTTTGTGCTCTTATCCAGATCTTCTTGAAGACAGCAAATTTCCAGAAGATGCCAAAAGTAGAGCTCGCCGCATTCTTCAAGCTTGCGGAGGAGAAAGTCTCGGTGCTTACAGTACTAGTCAGGGAATTGAAATGATTCGGCAAGATGTCGCACACTACATTGAACGGCGAGATGGAGGAATTACATCTGACCCTGACAACATTTACTTATCCACAGGAGCCAGTGATGCAATCGTGACCATGCTTAAGTTGCTGGTGTCAGGGGAAGGATTATCTCGTACAGGAGTGATGATTTCCATCCCTCAGTATCCTCTGTACTCTGCTGCTCTGGCTGAGTTGGGTGCTGTACAAATCAGTTATTATTTGGATGAAGACAACTGCTGGAGTTTGGACATCAGTGAGTTACGACGTGCCCTGCAGGAAGCTAAAAAGCACTGCAATCCTCGAGCTCTGTGCATTATTAATCCTGGCAACCCCACAGGTCAAGTGCAAAGCCGGCAGTGCATTGAGGACGTGATCCGATTTGCTGCAGCAGAAAACCTTTTCCTCATGGCTGATGAGGTCTATCAGGACAATGTTTACGCAGACGGGTGTAAATTTCACTCTTTTAAGAAGGTGCTGTTTGAAATGGGTCCGGAATACTCTGAGAAAGTGGAGCTAGCTTCGTTTCACTCAACATCAAAGTGCTACATGGGAGAGTGTGGTTTTCGCGGTGGTTATATGGAGGTGGTAAATCTAGACCCTGAGGTGAAAGTTCAACTCACTAAGTTGGTATCTGTACGGCTATGTCCTCCAGTGCCTGGACAGGCTCTTCTAGACGTGGTGGTCAATCCACCCCAACCAGATGAACCCTCATATGACACATTTATCAAGGAACGCAAAGATACTTTGGACGCACTGGCAGAGAAAGCCAACATGACACAAGATATCTTGAATCAGGTACCCGGAATAAAATGTAACCCAGTTCAGGGTGCAATGTACACTTTCCCATGCATCTACCTTCCACCGAAAGCCATCCTGGAGGCCAAGACGAAGGAACAAGCTCCGGATATGTTCTACTGTATGAAACTTCTGGAAGAAACAGGCATCTGTTTGGTTCCTGGAAGCGGCTTTGGGCAGCGAGATGACACCTACCATTTCAGAATGACCATCCTTCCCCCAAAAGAGAAGTTGAAGATAGTGTTGACAAAGATTAAGGAGTTTCACAAGCATTTTGTGGACCAGTACTCCTAACCCTGCCATCTCATTCTGACAAATTGACTAAATACTTAATTTCACTCATAAAGCTACAGCACTTCTAAATATGTGCTCTGGAAAAATGCCTGAAATGCAAATTTAGTCCCGTGTTGCAGCTCACAAAGTGGGAGTTAAGCACAGACATGCTGAGTGTACACAATGTAGTCACAGGCTCATCCATTAAACTTGTcagatgtttatttcttttaatagtgcgtattaaatgtttttgttaactgTA
>XM_043254048.1
AAGGTACAATCCATAGAGGCCAAAGTCGACTTGGAAATGTCCTGGAAACTTTCCTTGAATAGAACGGAATGAAAGGGGTGGGCAGGAAAAAGCTCTGATGTCGTATATGAACTTCACGTTGGTGGAGTTGTCTTTTAAACTgtgcacagaaaaaaaggaagaagagtGGATTTAATAACTGGAAGACTTTAATGATCAAAGGTGATCAAATAAGGTGTACACCGGAAATTCTCTGAAAAGCAAAACACGGAGATATGAGTAAGAACGGCCGTGAGTACCGCGAGAGGGTGCTGACGGTGGACACTATGAACCCTAACGTTAAACGCGTGGAATACGCTGTACGGGGTCCCATTGTCCAGAGGGCAGTTCAGATCGAAAGAGAACTCAAAATGGGAATAAAAAAGCCATTCACAGAGGTCATTAAAGCCAACATCGGCGACTGCCATGCTATGGGCCAGAAACCCATCACCTTCTTCAGACAGGTCTTGGCTTTGTGCTCTTATCCAGATCTTCTTGAAGACAGCAAATTTCCAGAAGATGCCAAAAGTAGAGCTCGCCGCATTCTTCAAGCTTGCGGAGGAGAAAGTCTCGGTGCTTACAGTACTAGTCAGGGAATTGAAATGATTCGGCAAGATGTCGCACACTACATTGAACGGCGAGATGGAGGAATTACATCTGACCCTGACAACATTTACTTATCCACAGGAGCCAGTGATGCAATCGTGACCATGCTTAAGTTGCTGGTGTCAGGGGAAGGATTATCTCGTACAGGAGTGATGATTTCCATCCCTCAGTATCCTCTGTACTCTGCTGCTCTGGCTGAGTTGGGTGCTGTACAAATCAGTTATTATTTGGATGAAGACAACTGCTGGAGTTTGGACATCAGTCAAGTGCAAAGCCGGCAGTGCATTGAGGACGTGATCCGATTTGCTGCAGCAGAAAACCTTTTCCTCATGGCTGATGAGGTCTATCAGGACAATGTTTACGCAGACGGGTGTAAATTTCACTCTTTTAAGAAGGTGCTGTTTGAAATGGGTCCGGAATACTCTGAGAAAGTGGAGCTAGCTTCGTTTCACTCAACATCAAAGTGCTACATGGGAGAGTGTGGTTTTCGCGGTGGTTATATGGAGGTGGTAAATCTAGACCCTGAGGTGAAAGTTCAACTCACTAAGTTGGTATCTGTACGGCTATGTCCTCCAGTGCCTGGACAGGCTCTTCTAGACGTGGTGGTCAATCCACCCCAACCAGATGAACCCTCATATGACACATTTATCAAGGAACGCAAAGATACTTTGGACGCACTGGCAGAGAAAGCCAACATGACACAAGATATCTTGAATCAGGTACCCGGAATAAAATGTAACCCAGTTCAGGGTGCAATGTACACTTTCCCATGCATCTACCTTCCACCGAAAGCCATCCTGGAGGCCAAGACGAAGGAACAAGCTCCGGATATGTTCTACTGTATGAAACTTCTGGAAGAAACAGGCATCTGTTTGGTTCCTGGAAGCGGCTTTGGGCAGCGAGATGACACCTACCATTTCAGAATGACCATCCTTCCCCCAAAAGAGAAGTTGAAGATAGTGTTGACAAAGATTAAGGAGTTTCACAAGCATTTTGTGGACCAGTACTCCTAACCCTGCCATCTCATTCTGACAAATTGACTAAATACTTAATTTCACTCATAAAGCTACAGCACTTCTAAATATGTGCTCTGGAAAAATGCCTGAAATGCAAATTTAGTCCCGTGTTGCAGCTCACAAAGTGGGAGTTAAGCACAGACATGCTGAGTGTACACAATGTAGTCACAGGCTCATCCATTAAACTTGTcagatgtttatttcttttaatagtgcgtattaaatgtttttgttaactgTA

Function

symbol description
si:ch211-217a12.1 Predicted to enable catalytic activity and pyridoxal phosphate binding activity. Predicted to act upstream of or within biosynthetic process. Orthologous to human GPT (glutamic--pyruvic transaminase).

NR:

description
alanine aminotransferase 2-like isoform X1

GO: NA

KEGG:

id description
K00814 GPT, ALT; alanine transaminase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254046.1 True 1957 mRNA 0.45 12 5668908 5684328
XM_043254047.1 False 1846 mRNA 0.45 12 5671351 5684328
XM_043254048.1 False 1881 mRNA 0.45 12 5668900 5684328

Neighbor

gene id symbol gene type direction distance location
fkbp10b fkbp9,fkbp10b,LOC107674681 coding upstream 47560 5614079 ~ 5621340 (+)
ppp1r16a ppp1r16a,LOC107716460,LOC107653270,LOC107674642,LOC107727964,LOC107551825 coding upstream 104146 5543755 ~ 5564754 (+)
oplah oplah,LOC107716462,LOC107674627,LOC107653252,LOC107727975 coding upstream 135993 5510698 ~ 5532907 (+)
kcnh4b kcnh4b,LOC107727971,LOC107674597,LOC107716465,LOC107551826,LOC103352817,LOC107556752 coding upstream 192236 5452829 ~ 5476664 (+)
psme2 psme2,LOC107716467,LOC107653260,LOC107551845,LOC107556770,LOC107674582,LOC107727955 coding upstream 245483 5420706 ~ 5423417 (+)
kbtbd2 kbtbd2,LOC107711671,LOC107674719,LOC107660299,LOC107708283,LOC107551836 coding downstream 7030 5691358 ~ 5699906 (+)
LOC122355830 tceb2,LOC108280902,LOC107564001,LOC103036770,LOC108427344 coding downstream 78166 5762494 ~ 5765843 (+)
med1 med1 coding downstream 155875 5840203 ~ 5863290 (+)
LOC122355059 adprh,LOC108411014,LOC108274007,LOC105894051 coding downstream 640165 6324493 ~ 6391831 (+)
LOC122355310 LOC107569775 coding downstream 897260 6581588 ~ 6583943 (+)
G85713 NA non-coding upstream 66719 5601474 ~ 5602181 (+)
G85687 stat5b,LOC107674616,LOC107556764,LOC107727963,LOC102309899 non-coding upstream 172666 5495107 ~ 5496234 (+)
G85685 NA non-coding upstream 175966 5491714 ~ 5492934 (+)
G85683 ghdc,LOC107556765,LOC107727961 non-coding upstream 183151 5483574 ~ 5485749 (+)
G85661 NA non-coding upstream 266188 5397563 ~ 5402712 (+)
G85774 NA non-coding downstream 137103 5821431 ~ 5821687 (+)
G85905 NA non-coding downstream 273566 5957894 ~ 5958234 (+)
G85967 NA non-coding downstream 413800 6098128 ~ 6098334 (+)
G85971 NA non-coding downstream 416834 6101162 ~ 6118513 (+)
LOC122355060 NA non-coding downstream 646009 6330337 ~ 6336029 (+)
drosha drosha,rnasen,LOC107716466,LOC107727962,LOC107556767 other upstream 222181 5426581 ~ 5446719 (+)
LOC122355392 pnmt,LOC107571312,LOC107676565 other upstream 559854 5081165 ~ 5109046 (+)
G85587 NA other upstream 579262 5088925 ~ 5089638 (+)
G85567 NA other upstream 1215625 4452855 ~ 4453275 (+)
LOC122355720 gnrh2,LOC107750862,LOC107671109 other upstream 1249687 4418247 ~ 4419213 (+)
LOC122355829 tgfb1i1 other downstream 82069 5766397 ~ 5816315 (+)
becn1 becn1,atg6 other downstream 202624 5886952 ~ 5953486 (+)
G85962 NA other downstream 411620 6095948 ~ 6096732 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other downstream 530591 6214919 ~ 6216567 (+)
G86019 LOC107570179 other downstream 756493 6440821 ~ 6441526 (+)

Expression


Co-expression Network