aarsd1 (aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654)


Basic Information

Item Value
gene id aarsd1
gene name aarsd1,LOC107739756,LOC107695514,LOC107708900,LOC107598654
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 1009987 ~ 1017230 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254069.1
TCGGGGAGGGGGGGTGGAAGAAAGGATGAGAACGGGAAAATCGAAGTCGCGCCGTATCGTTTCACAGTTAATGAGCTGCTGTCTGCGGTTAAGAGCGGttattgattgttttgtttgattgcCGAGGACACTGACTTTCGTGGGACGCATACTTGCTGCGTATGAACAATACGaaactattataataaataaacgcgAGTGGTTTCACGTCAGTGCGCCGCTTTTAAAACTCTTAATACAGCCTGGTGGTTTCCATGAGACGTTTTGTTAGgctaaatgtcatttttagtcAATTGCGCCACCTTCCGGTCAAGAACTGAGTCCTCGGGAAAAATAGACGACGCATAAAAAAATagacaacaaataaaatttgcGCGTACAAATTTCTTGACGTATGTCAAACTAAGTGTAAGATAATTATTTTTCGTGTACTACAAATGAAGGGTGAAATTTATTACCCCTGGAATTGATTTTAGTGACATTTgtctgtaaattatttaattatgcatttaaatgagcaCTTTAGGAAAGTACTGAAATGTGGTagctttgtgtaaaaaaataaataaataaataaataattgataaagCATTGCGTTAGATACATTTATGTACTCACATGCTCAGACGTggcatatttacataaataaattacacggaaatgtaaagaaaaaaaacaacaggcaAGATTCACAACACTGAAAActaaggacttttattttgaaggccGTGTTTTAACTTTCGGTCGGGTTTACTGTAGCAAGCGCTGATCGCTTGTACTTTACATTTGAAGAAACATGGCTTTCCAGTGTCAGAGGGACTGTTACATGCAGGAGttCGACACGTGTGTCGAGTCTTGCGTGCCGGCAGAATTAACCTTCGAGAataatggaaagaaagaaaaggtgaAAGGCTTCAATCTGAAACTGAAAGACACGATTCTGTTTCCAGAGGGCGGAGGACAGCCTGACGATCACGGGACGGTTGGTGGTGTCCCTGTCCTGAGAGTGTTGAGACAGGGTCCGGAGGCGGTGCACTTCATCAGCTCTGCTCTGGAGGAGGGTCAGGAGGTGCACGTCAAGCTGGACTGGGAGAGACGCTGACACATGCAGCAGCATTCGGgtcaACACTTGATCACAGCTTTGGCTGATACAATGTTTGGATACAAAACCACCTCTTGGGATTTGGGCCGTCAGCGAAGCAGCATAGAGCTGGACACGGCCGCGGTGAAGCCTGGAGAGATGGAGGCTTTGGAGGCGGCTGTGAATGAGAAGATTCGTGCACACATTCCAGTCATGGTCAACCTCCTCTCCGTTGATGATCCTGCTGTGGAGAAGGTGAGAAGCCGAGGTCTTCCTGACGACCACGCTGGACCCATCAGGATCATTGACATCGAGGGCGTAGACGCCAACATGTGCTGCGGGACTCATGTGTCCAACCTCAGTCACCTTCAGGTTATAAAGATTTTGGGGACCGAAAAAGGGAAGAAGAATAAAATCAACCTGATTTTCATAGCTGGAAACAGAGTGCTGAAATACGCCGAAAAGAGTTACAGCGTTGAAAAATCGCTGACTGGTCTTCTCAAGACAGGAGCAGATGAGCACGTCGATGCTGTGGACAAGATACAGAAGACTGTCAAACGTCTTCAGAAGAGTAATCTAATTATCCTGAGGGAAATGGCTGTTCTGATAGCGCAGAACTTCAAAAACCAAGCGGGCAGGGGAAACTTCTTCAGCTTGCACAACAAAGACGGTGATAATGAGTTCATGAACATCATTGCGAACGGCATTGGATTTCAGGACACGGTGATCTTCCTGACCGTGGGTGAGGAGAAGGGTGCCGGGCTGTTCCTGCTCGCAGGGCCTGAGGACATCGTCTCTGAAGTGGGACCTCGGGTGGCGGATCTGCTGCAGGGTAAAGGAGCGGGAAAAGCTGGACGTTACCAGGGTAAAGCCAACAGCCTGGCCAAGAGAGCAGAGGCTGAGGCTTTACTGAAGGAGCACAGCTGCAAACTAACCGTAGGAGAGGAATGAAACAGCGGTGCAGTCACGTCTATACCCAAATACATGAACCCTTTTGCGACTCGTCAGAACAGCTTGACTTCGTTTTATCGGTCTACACTGGAAGCGCTCAATACGTCCCAACACATCACGACGGAGCTTTAGTTGAAAGATGCTCCGTTTCTGTTTTTCATGAAGCACATAACTAATCCAGCCTATTTATTTTTCCcgtccatttaaaaaaaaataaaaattattattatttagcctTCTGACTCGTTGGGTTAAAGGCAGCTCGTGACATTTTGGACCTTAAATGTAAGTCATTTTACTAGAAAATAAATCTAGGCATACGagcatttttatacaaatggGTTTTAGCTGAAAGCGAAATAGGAAACGAattctataaattatattatcttCCTGCTGATTGGTCCTTGACGGCATGCAGCATCCGACGCAGTCCCTGGGATGTTGTTTGCTTCCAGCGTAGCTAAAGTGCTTCGGAGAAGCGTCGCTTGAACGGTGGACTTTGGTGTAATTGGAGCTGGTTAATGTAGCGACGATGCCTTTTCACTGGaagttataaaaaatatcttcatcgCTAATCATTTGGTGTTGCCCTGCTGTACGACTGAGGTTACGAAAACAGTGTATTAGTTGGAGCAAAATTAAATGCCTCAATTGTCAATgaaagtttgtattttttttttctttgtcgtAGCGCACGCTCTTCAAAAAATCGCCATAATTCATAAATGCTTATCAGCCGTTGGATTGGTTCATAATATAAATagccaaaaaactaaatgtataagaataaaaaacagCCAGATAGACATATAATAAACTTGCAGAACATTGACGTTGTTATAAGAACAAATAATCGCTGTATAATTTACACTGCAAATCATTTTCTGTAATGCAAGTCTTTAGATGCCTCTGTGCAGTCATCACCAAACATAAAGCTGattgaatgctaaaaatgaatgtttttgaaatgaagTATTTGTAAGCGTGTGATTCACTCACACCTGACTGTACCGTACAGCTTGTGCTTAATAAATCATCTTCCAATTAA

Function

symbol description
aarsd1 Predicted to enable Ser-tRNA(Ala) hydrolase activity. Predicted to be involved in regulation of translational fidelity. Predicted to act upstream of or within tRNA aminoacylation and translation. Predicted to be located in cytoplasm. Is expressed in midbrain; myotome; optic vesicle; pectoral fin; and retina. Orthologous to several human genes including PTGES3L-AARSD1 (PTGES3L-AARSD1 readthrough).

NR:

description
alanyl-tRNA editing protein Aarsd1

GO:

id name namespace
GO:0043039 tRNA aminoacylation biological_process
GO:0006412 translation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K07050 AARSD1, ALAX; misacylated tRNA(Ala) deacylase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254069.1 True 3084 mRNA 0.43 13 1009987 1017230

Neighbor

gene id symbol gene type direction distance location
g6pc1a.1 LOC107654044,LOC107598610,LOC107739755,LOC107708934,LOC107695523 coding downstream 4912 999187 ~ 1005075 (-)
kat7b kat7b,kat7,LOC107598609,LOC107739754,LOC107708935,LOC107654043,LOC108443263 coding downstream 19739 983000 ~ 990248 (-)
itga3b itga3,itga3b,LOC107708875,LOC107664597,LOC107557321 coding downstream 142110 837814 ~ 867877 (-)
abi3b abi3b,LOC107654042,LOC107598650,LOC107743966,LOC107664617,LOC107708878 coding downstream 207185 798821 ~ 802802 (-)
LOC122355750 LOC107654041 coding downstream 212263 778501 ~ 797724 (-)
a1cf a1cf,LOC107654048,LOC107739758,LOC107695528,LOC107708930 coding upstream 28186 1045416 ~ 1056434 (-)
pcdh15b pcdh15b,pcdh15,LOC107654051,LOC107695531,LOC106578947,LOC106589399 coding upstream 200197 1217427 ~ 1374084 (-)
ipmkb ipmk,ipmkb,LOC107746459,LOC107654052,LOC107708928,LOC107695532 coding upstream 610933 1628163 ~ 1641997 (-)
ube2d1b ube2d1b,ube2d1,LOC105891213,LOC107717106,LOC106607701,LOC107553913,LOC107733527 coding upstream 625604 1642834 ~ 1648762 (-)
zgc:171971 zgc:171971,LOC107695535,LOC107596590 coding upstream 635219 1652449 ~ 1658747 (-)
LOC122355070 NA non-coding downstream 30202 947027 ~ 979785 (-)
G84700 NA non-coding downstream 220984 759925 ~ 789003 (-)
LOC122355303 NA non-coding downstream 240089 766654 ~ 769898 (-)
G84666 slc35g1,si:ch211-197g18.2,LOC107598601,LOC107654036,LOC107664634,LOC107664593,LOC107557359,LOC107708939 non-coding downstream 346241 660089 ~ 663746 (-)
G84654 NA non-coding downstream 398140 610067 ~ 611847 (-)
G84793 prkg1,prkg1b,LOC107695529,LOC107654050 non-coding upstream 47703 1064933 ~ 1065345 (-)
LOC122355531 NA non-coding upstream 131709 1148939 ~ 1172741 (-)
G84795 NA non-coding upstream 143868 1161098 ~ 1182132 (-)
G84804 NA non-coding upstream 161305 1178535 ~ 1179376 (-)
LOC122355293 NA non-coding upstream 528323 1545553 ~ 1546494 (-)
dlx4b dlx4b,LOC107739765,LOC107557342,LOC107708902 other downstream 112470 889710 ~ 897517 (-)
ifnphi4 LOC107653919,LOC107732171,LOC107598640,LOC107664622,LOC107708945,LOC107557348 other downstream 457544 543246 ~ 552443 (-)
zgc:163073 LOC107653918,LOC107732170,LOC107708955,LOC107557349,LOC107664608,LOC107598675 other downstream 509768 496964 ~ 500219 (-)
LOC122355759 NA other downstream 519608 484438 ~ 490379 (-)
prr12a prr12a,LOC107708947,LOC107664611,LOC107598586,LOC107654018,LOC107732166 other downstream 649505 340273 ~ 360482 (-)
ank3b ank3b,LOC107654059,LOC107695539 other upstream 796853 1814083 ~ 1947412 (-)
jmjd1cb jmjd1c,LOC107745648,LOC107654065,LOC107695544 other upstream 1156758 2173988 ~ 2285052 (-)
G85232 LOC107663296,LOC107583514,LOC107733536 other upstream 1750678 2767908 ~ 2781353 (-)
LOC122355711 rara,LOC107700643,LOC107717720,LOC107565243,LOC107563215,LOC107719850,LOC108434941,LOC108261354,LOC107554136,LOC107737746,LOC108276117 other upstream 2072399 3089629 ~ 3103315 (-)
G85366 NA other upstream 2241301 3258531 ~ 3299688 (-)

Expression


Co-expression Network