zfp36l2 (zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775)


Basic Information

Item Value
gene id zfp36l2
gene name zfp36l2,LOC107698819,LOC107749349,LOC107700120,LOC107550050,LOC107728722,LOC107582775
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 11119418 ~ 11122838 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254109.1
CCCAAAACCTGCGCGGCTCAACTCCAAAGAACTCCAGCGCCTTTCCAACTCCGTTTGAAGAGGCAAACCCCGTTCAGCCGTGGATTTCTCTGAGTACACAAGGATCTTTCTCGGTCCGAAAACTTTTTCCCCCTGAGCTGGAACTCAATAGTGAAAATGTCCGCTTCGGTGCTGTCTTCCATATATGATTTCGACAGGgaaaaaGTCCCAAATTCAAACGCAATCTATCTCCACAATATGCTGGAAAAGAGGAATGTCGGGGTCCCGCTTGCTGCTTCCAACAGCAACAGGCCTTTTGGTTATTTCAGGAGTAACTCAACAAACCACATGGACTTCAACATGAGCAACAGGCTCCAGATCGGTTTCGAAAGCTCGACACCTGCCTTcatgaataaagaaaacaagtacCGAGACCGTGCGTTCAGTGACACGGGGGAACGCAGTCAACAACTACAGGAAATCCTTCAACAAAAGCCCGGCTCTCAGATCAACTCGACCCGCTACAAAACTGAACTTTGCAGGCCTTTTGAGGAAAACGGTTCATGCAAGTACGGGGAGAAGTGCCAGTTCGCTCACGGCTATCACGAACTGAGAAACCTGTCCCGCCACCCGAAGTACAAGACCGAGCCGTGTCGCACATTCCACACTATTGGTTTCTGCCCATACGGCCCTCGCTGCCACTTCATTCACAACGCAGATGAGCGGAGAGCTGCTACGAGTAACGCTCAACCGAGGCTCAGCAGGGAGATCGGTGTCCTGGAAGAGAAAGAGTCGTCGAACCCGTTCCTGAGACCGAGGGAAAGACCAAAGCTGCACCACAGCCAGAGCTTCTCCGGCTTCTCCAGCTCCTGCAGCAACGAGTCCGCTTTGATTGACAACCCAACATCTCGCACGCCCCCGCCGCTCCCCTGCACGCTCACTCCCAGTTCTCCCTGTCTGAATGCGTTCCCGTTCCCCGATCAGGATCTTAAAGCTTTTCTTGCCCCCATCATCCCTCAAACCCACAGTTCCTTTACCCATCAGAGCAGCGGTGGCTTGTACAGCAACATCCAGACCAACGCTTGCCCCCCATCGCCACCTTTCAAAATGAGCCACTTGCCCTCCATGCATCCACTCTCAGAGTCTCCAGTGTTCGATTCTCCACCGAGCCCACCAGATTCCCTCTCAGACCGCGAAGGGTACCTGAGCGGCTCTTGCTGTTCCTCCGGCACAATCAGCGGTTCGGAGTCACCCAGTATGGACGCAAATAGACGTTTGCCAATCTTCAGCAGGCTGTCGATTTCAGACGATTGACTTGCTATTATTCTTATAGCCTTTTATCCAAGTAGTGCCAACATGAGTTTCAGGTCAAATATCAGTCTCAGCCGTTGGTTATCTCTAAGTGTTTGTCTCATGATTGAGATCTGAttatatttcttcttttctcatttttccTTACCAAGATGATGGCTTCAGCAGTCTAGAAAAAGGCATATGTAGAAGTAACTATCTTGGGAAAACATTCCATAAATTTGGAAGTGGTGTGAGAGCACAAGAACTGGGACTCATAAGCTGGTCATGGAATGTCActgcagatatttttttttttttttataattgtgtgGTATCATTGCATTTTTGCCTCATGCTTTGAAAtctatttaacttatttattgtCATGTGAAAGTATAGCCTTCAAGGATAAATTGAGTCCATATGGTATTTATCAAATCTAAAGCAATACACTTATATTCCTGTTTAAGTTGTGATCGCCAATATTAATCTGGAAACCATTGGGTTCGTCtcacaataatatatttttgttaacttgtttattttactgtaaataagtaatttaagattgtatgctatttatttcaattttgtttactgtgtgtgtgtgtgtgtgtatatatataaaaaaaaaaaaaagtgggagCGCCTGATGAGGTCACTCTGTGATTTCTTGTACAGGAGGGAGGGAAGTGTCAGAGGATCTATGGGCATTTGTAGAATGTAGCCTGTCTTATGATGTCTTTATGGCCGTAAAGAACTAACTGACTTCACACCTACgagtatgactttcttttttttttttttttttttttttttttttttttataccaacGATAATAACAACCAAAAAAAGTGTCCATTTGCACACAGTTGCGTGACGATTGCGGTCTAGTGCCAGAGAATGTAGCACTCTCCTATCTAGAGGTTAATAACTAGCTAATACGTGTCTGCTGGGGTTGAAGATCCCACATAGTTTAACCTAATAAAGCAGTTGCTTTGGTGTATATTTAAAGCCAGTTGAATTGAATGTAGCTCATAGATCAAGatgcctttttttgtttttatggtgAATGAGATGCTatttcaatgtttatttttctacttttagaCCATTTGAACGCACCATTCCTAATGAAAGACACTCTGCCTTTCAACTGTGCTTCTCTAGACATGCTGACTGGGGATATTAAGTTTCGTAGTTGGTTAATAACTATTACTTTAACTTTTTAGAGGAAGTAAAGCAACACTGAATGTAATAAACGAACGTCAGCTGGAGATGGAGTATGTATTCAAAGTGTGCAGAGTAAACTTGTactgtatgttgttgttttttttaatatatatatatattttccatagAACTTCTAATAAAGGCATTTTTGAACAAG

Function

symbol description
zfp36l2 Predicted to enable metal ion binding activity. Predicted to be located in cytoplasm. Orthologous to human ZFP36L2 (ZFP36 ring finger protein like 2).

NR:

description
PREDICTED: mRNA decay activator protein ZFP36L2

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K15308 TTP; tristetraprolin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254109.1 True 2663 mRNA 0.43 2 11119418 11122838

Neighbor

gene id symbol gene type direction distance location
hcar1-4 LOC107749353,LOC107698821,LOC107550036,LOC107700109,LOC107582776,LOC107728709 coding downstream 35382 11082205 ~ 11084036 (-)
kcng3 kcng3,LOC107749354,LOC107728707,LOC108273984,LOC107698800,LOC108430560 coding downstream 64612 11049679 ~ 11054806 (-)
rhoq rhoq,LOC107550049,LOC107582780 coding downstream 91988 11012472 ~ 11027430 (-)
socs5a LOC107582782,LOC107728716,LOC107698827,LOC107673648,LOC107550046,LOC107749358,LOC107550045 coding downstream 122837 10985042 ~ 10996581 (-)
msh2 msh2,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107728724,LOC107673650 coding downstream 181405 10931862 ~ 10938013 (-)
six2b LOC107749381,LOC107550038,LOC107698797,LOC107582772,LOC107700111,LOC107739330 coding upstream 94454 11217292 ~ 11219552 (-)
sncgb LOC108430421,LOC107550059,LOC107700127 coding upstream 201563 11324401 ~ 11331793 (-)
bmpr1ab bmpr1a,bmpr1ab,LOC107749344,LOC107698810,LOC107550060,LOC107739296,LOC107582766,LOC108274296 coding upstream 221621 11344459 ~ 11374806 (-)
ldb3b ldb3b,ldb3,LOC107749342,LOC107552745,LOC107739309,LOC108274368,LOC107698793 coding upstream 252957 11375795 ~ 11392390 (-)
opn4b opn4b,LOC107552747,LOC107739286,LOC107582762 coding upstream 271419 11394257 ~ 11420206 (-)
G87429 mta3,LOC107749351,LOC105904126 non-coding downstream 47653 11071249 ~ 11071765 (-)
G87406 fshr,LOC107728706,LOC107582855,LOC107673646 non-coding downstream 223271 10895841 ~ 10896147 (-)
LOC122355137 NA non-coding downstream 224701 10868848 ~ 10894717 (-)
G87376 NA non-coding downstream 254822 10816561 ~ 10864596 (-)
G87388 NA non-coding downstream 314680 10793063 ~ 10804738 (-)
G87450 NA non-coding upstream 1609 11124447 ~ 11126279 (-)
G87409 NA non-coding upstream 136179 11259017 ~ 11298534 (-)
G87482 NA non-coding upstream 148903 11271741 ~ 11273302 (-)
G87484 NA non-coding upstream 155486 11278324 ~ 11283586 (-)
G87417 NA non-coding upstream 189634 11312472 ~ 11315998 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 73529 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 112464 11005006 ~ 11006954 (-)
thrab thrab,LOC107584392,LOC107733455,LOC107657272,LOC108430158,LOC107665883,LOC107723634 other downstream 1179569 9311653 ~ 9939849 (-)
ormdl3 ormdl3,LOC107723636,LOC107657273,LOC107556587,LOC108273759,LOC102217224,LOC106521946,LOC102783025,LOC105936292,LOC107092838 other downstream 1630106 9481559 ~ 9489312 (-)
LOC122355288 LOC107660874 other downstream 2241287 8875617 ~ 8878131 (-)
G87489 NA other upstream 198585 11321423 ~ 11322603 (-)
G87569 NA other upstream 710041 11832879 ~ 11835612 (-)
G87608 NA other upstream 825702 11948540 ~ 11951155 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 1526545 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 1629066 12751904 ~ 12752678 (-)

Expression


Co-expression Network