nog3 (nog,nog3,LOC107702438,LOC107566874,LOC107722200,LOC107684148,LOC107581671)


Basic Information

Item Value
gene id nog3
gene name nog,nog3,LOC107702438,LOC107566874,LOC107722200,LOC107684148,LOC107581671
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 14222944 ~ 14224109 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254131.1
AAGCGAACACTCAAGCGCGAGGATTAATCAGCCGAAAAGATGGATAACGTGCCGTATTTTCTGGCTACATACGTGCTCATTTTCTCCCTCGGATTCAGGATAGAAGAAGGGATGTGCCAACATTACTACCTCCTCCGTCCCATTCCCAGTGACACTCTGCCTATAGTGGAACTCAAGGAGGACCCGGATCCCATACTGGACCCTAAGGAGCGGGATCTGAACGAGACCGAACTCCGAGCCATGCTAGGCAGTCAATTCGACCAGAACTTCATGTCCATCAGCCCACCAGAGGACAAATACGCAGGACaggacgacctgaacgagtctGAACTCTTCAAGCGTCCCACCGGCACCATGCCCAAAGAAATCAAAGCCATGGAGTTTGAGATCCAGCATGGGAAAAAACACAAGCCCAGTAAGAAACTCAGAAGGAGGCTTCAGCTGTGGCTGTGGTCCTACGCCTTCTGCCCGGTGGTGCACACATGGCAGGACCTGGGGAACAGATTCTGGCCCCGCTATGTGAAGGTGGGCAGCTGCTACAATAAAAGGTCTTGTTCGGTTCCAGAAGGGATGGTTTGCAAACCAGCCAAATCCAGCCATTTTACGGTTTTGCGATGGAGGTGCCTGCAGAGAAAGGGTGGGCTCAAATGTGCCTGGATACTAGTTCAGTACCCCATTATATCAGAGTGCAAATGCTCCTGCCCGAACTGAAATAAGCTCCAGGCTCATTCTCACATGCACTGTCCAGTGTAGGAATGTATATTTGATGTATATGTTGTGCCATTCTAGGTTACACTTTACATTGGTGTTCATGTTACTGTGTAATTTCATACAGAAGTACTGACGAGTGATGCTGACAAAACTTTGTGTACTTAACATGTGATTCTTTTGTGGAGCTGCTTGGTATTATAGTCATTATAGtaaataattatagtaatatgtCTAACATGGACACTGTAATGTAAAGTGGTGCCtgattcatttatataaaaagaaaaaaggtcagTATTTGCCTATAATATCCAGTGTCTACTGTAACTTTGGTTGTAATGTAactttatacatatttatgtcaAAGAACATTTCGCATTCAAAGTGCGTTTATTGAAGGAATTCCAAGCTTTTTCCATTATtcggaaaaaaaatactttatctTTATACACCTC

Function

symbol description
nog3 Acts upstream of or within several processes, including embryonic viscerocranium morphogenesis; negative regulation of BMP signaling pathway; and urogenital system development. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in cartilage element; fin; head; and otic vesicle. Human ortholog(s) of this gene implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Orthologous to human NOG (noggin).
nog Enables cytokine binding activity and protein homodimerization activity. Involved in several processes, including embryonic morphogenesis; regionalization; and regulation of signal transduction. Located in extracellular space. Implicated in Huntington's disease; cleft lip; dysostosis (multiple); hyperopia; and proximal symphalangism (multiple). Biomarker of relapsing-remitting multiple sclerosis.

NR:

description
PREDICTED: noggin

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0035844 cloaca development biological_process
GO:0051216 cartilage development biological_process
GO:0030514 negative regulation of BMP signaling pathway biological_process
GO:0045596 negative regulation of cell differentiation biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007368 determination of left/right symmetry biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K04658 NOG; noggin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254131.1 True 1166 mRNA 0.44 1 14222944 14224109

Neighbor

gene id symbol gene type direction distance location
ankfn1 ankfn1,LOC107702427,LOC107684130,LOC107722232 coding upstream 7293 14183582 ~ 14215651 (+)
hlfb hlf,LOC107566512,LOC107702475,LOC107581580,LOC107684053,LOC107722239 coding upstream 80872 14136665 ~ 14142072 (+)
lrrc59 lrrc59,LOC107755517,LOC107684048,LOC107722190,LOC107581574 coding upstream 222617 13997306 ~ 14000327 (+)
LOC122355878 LOC107755407,LOC107566757,LOC107702425,LOC107722184 coding upstream 225881 13993668 ~ 13997063 (+)
habp2 LOC107684127,LOC107722212,LOC107581633 coding upstream 250294 13968509 ~ 13972650 (+)
rbfox3a LOC107566522,LOC107755508,LOC107684054,LOC107581581,LOC108435270,LOC107702478,LOC108273414 coding downstream 55607 14279716 ~ 14643378 (+)
csnk1db csnk1db,LOC107566590,LOC107684056,LOC107702480,LOC108435268,LOC103030301,LOC107755503 coding downstream 449095 14673204 ~ 14684302 (+)
ccdc57 ccdc57,LOC107702483,LOC107566601,LOC107565792 coding downstream 468136 14692245 ~ 14704810 (+)
fasn fasn coding downstream 482282 14706391 ~ 14728083 (+)
narf narf,LOC107702486,LOC107565794,LOC107755497,LOC107722235,LOC107684062 coding downstream 507300 14731409 ~ 14739878 (+)
G88238 NA non-coding upstream 3968 14142713 ~ 14218976 (+)
G88207 LOC107702472,LOC107581578,LOC107566485,LOC107722231,LOC108443562,LOC103039554,LOC107684050 non-coding upstream 132076 14028426 ~ 14090868 (+)
G88111 NA non-coding upstream 505812 13715584 ~ 13717132 (+)
G88106 NA non-coding upstream 512705 13710004 ~ 13710239 (+)
G88079 NA non-coding upstream 642653 13580078 ~ 13580291 (+)
G88270 enpp7.1,LOC107755405,LOC107684149,LOC107722193,LOC107581672,LOC107755509 non-coding downstream 9403 14233512 ~ 14243310 (+)
G88269 enpp7.1,LOC107684149,LOC107722193,LOC107755405,LOC107581672,LOC107702441 non-coding downstream 13304 14237413 ~ 14238303 (+)
LOC122355796 NA non-coding downstream 21243 14245352 ~ 14267029 (+)
G88296 NA non-coding downstream 556806 14780915 ~ 14783938 (+)
LOC122355815 NA non-coding downstream 693653 14917762 ~ 14919039 (+)
stxbp4 stxbp4,LOC107702473,LOC107581670 other upstream 91159 14105956 ~ 14131785 (+)
rnf157 rnf157,si:dkey-49c17.3,LOC107702467,LOC107755520,LOC107684047,LOC107722211 other upstream 229900 13978171 ~ 13993044 (+)
LOC122355339 LOC107702424 other upstream 318317 13894361 ~ 13904627 (+)
gucy2g gucy2g,LOC107702423,LOC107755438,LOC107722192,LOC107581632,LOC107684125,LOC107571103,LOC108273537 other upstream 358201 13855695 ~ 13864743 (+)
G88082 NA other upstream 626596 13595794 ~ 13596348 (+)
sfxn2 sfxn2,timp2a,LOC107755483,LOC107722238,LOC107581595,LOC107690949,LOC107565802,LOC107755484,LOC107684079,LOC103024286 other downstream 705970 14930079 ~ 14940191 (+)
si:dkey-21c1.4 LOC107755475,LOC107576597,LOC107690918 other downstream 1083317 15307426 ~ 15312004 (+)
qki2 qki2,LOC108426533,LOC107755469,LOC107690925,LOC107601430,LOC103029551 other downstream 1122436 15346545 ~ 15378101 (+)
LOC122355837 ndst2b,LOC107601424,LOC107755463,LOC107690932,LOC107749844,LOC107684097,LOC107561853,LOC108410510 other downstream 1227385 15451494 ~ 15774014 (+)
baiap2b baiap2b,LOC107684102,LOC107749842,LOC107690938,LOC107755398,LOC108273716 other downstream 1609175 15833284 ~ 15928026 (+)

Expression


Co-expression Network