ppp1r3cb (ppp1r3cb,LOC107584161,LOC107753441,LOC107758435,LOC107704020,LOC107594153,LOC107669176)


Basic Information

Item Value
gene id ppp1r3cb
gene name ppp1r3cb,LOC107584161,LOC107753441,LOC107758435,LOC107704020,LOC107594153,LOC107669176
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7487720 ~ 7492825 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254148.1
CCGGCTGTGAGCTCTTGGCTTTGGCAGTACAGCTGGACCGTGAAGGGGGCGTGTCGCTGCAAACGACGGTTAGTCAGGGGATTTTATTTACGATAGTTGACACATTattaaatgaagtttaaaaGCAAGGAGGAAAAAAGCTGTACTTGTTCAAACTATAATAGTGCAAACTGTGTCTGCCGTTTTGGAAACAAACCACGGGTTTCAATGAATTGCACCAGGGTTCTGCAGATACTGAACCCCAGGCCAATGCCAAGTCCAATTATGCCTGTGGATGTGGCAATGAGAATTTGTCTGGCACAATCGCCGCCTCTTCGCAGTTTCCTCAGTTCATATGAGGACTGCAAGTCCAGGAGCCTAGTCAACCATTACAAACCTTTGAGATCCTGCATCAGCACCAAGACAGACGTGGACACTGATAACATAGGGTGGAATAGTCCCgagaccaaaaacaaaaagaaagtggTTTTTGCTGATTCCAAAGGCATGTCTCTGACGGCAGTCCATGTATTCAAGGAATTCGAGGAAGACCCTATGTTAGACTTGCAGTTTGAATTATCAGACTTGGAGGACGCCATTGTGGGCCTGAAATCAGAGAAGGAGAAGAATTTGATTTTGGATTTCCCTCAGCCTTCTGCAGACTATTTGGACTTTCGGAACCGTTTAAAGAAGAGCCTGGTATGCTTGGAAAACTGTATAATTCAAGAGAGATCAGTCAATGGCACAGTCAAAGTGAGTAATGTAAGCTTTGAGAAAACGGTCCATGTGCGAATAACATTCGATTCATGGAAAAGCTACACTGATATACCATGTACATACATGAATAATGTTTATGGTTGCGAGGATGTTGACACTTTCTCGTTTTCCATCGACCTTCCAAGTTTTGTGCCCCCACATGAGCATGTGGAGTTCTGCCTATCCTATAAAACTCATGATAGCACATACTGGGACAATAATGATGGCAAAAATTACAAGCTGGTACATGCAGAGAATGACCCCAGCCAGACCAGTGTAACCCAAAAGACGGCAACAGATTTCAAGAATCAAGGCAAACGGCCAGAGATGGAATTTGATCAGTTTGGGAGCCCGAGAACATCTAGTGGATTCTTCCCTGAGTGGCAGAGTTGGGGTCATATTGAAAACACCACCCCCTACTGGTGACAGCTCTAGACCTCCGATGAACTTGGAAGTAAATGTTGTAACAAGGACAAATGCAAATGGTTTCAGAACTGACTTTTGAAAAGTCTAAAGAGTAAAGATTAGCAATGATGTCCTCAAAAGTGTTGGCCATTTTCATTCTGtccaaattaattaaatgttgggGTATGATTCTGAGAAACAcaaaatttagattaaaataagaAGTCTGGGCTCTATGCAACTTTGAGACTAACCGTGACAGTAACACAGAATGAAAAATGTTGGTTTATGTAATTTTCTAATTTTGTAGCACACTACGTATGCTATTTCGTAGATCTGACATGTGGTAAACCAATAATTTTCATAACATAGATGCCTTCCTTTGTGTTATTCTGTGATTAACTGTTATACAATGACATTTTGGATATCTTTCATCAAGATTTCCTTGTATGAAGTGAGCAACTAGCATTTGCTCTGAAATAGATTCTGCAACATTCTGTAACATTTTGTTACCTTGAAGGGTAATAATTTTGTTACTCTATCTAAAGTCACAGAATTTTGGGAATCCTGTTTTCGTCAAGTCGTCtgtaaagggatagttcaacccaaaattaaatttctgtcatttattcaacctccaaacatatatacatttcctttattttaacaaaatcaaagaaatattggaatcattaaataaaatgtgggTTTTTTGCCCATTTAATGAAAGTGTTATGGATCCcactgacttttattttatggaCAAAACAGCTCTTCAAATTATGTTCTTCAAAAAATTGTTCACTTCGGACTGATTAAAAGATGACagagtttttaattttgtgttaattGTTCCTTTAACAGCAGttcataaaatgtgtgtaattttaagATTATGGAATAATCTGGTACAGTATGAGATTGCTTCATATTGAAGTTTTTGCATCTCATATGATAGTACCAGTTTATCTGTCACTTTCTAATGAATGCACTAAGCGTGACGCATTATAAGGGAGTCCATGAGAGATAATAATGCCCATTAAGTGCTAAATCCCTGCTGTTGCACTTCCGATATTTCCGGTTCTACTTTTTAAAGCTGCACTTTcctacaaattttttttttcctacaacATTTTGCTGCTATAGTATTGTGCATGGCTGTGTGTTCTACATTGCGATTTATGACCCATGGTGTATGGAAACTCTCCAGTGTTATTTGGAGGATAGAAGAAGAGGGATTTGGATGTAACTTTATGAAGGCCATAGTAAGTCAGGATAAGTGGAGAGTAAGGAGAGTGATAATATTAAATgagattgttgtttttttcatgattGTTTTTCCCCTCTCCCGCTAGAAAAACTGGTTGAGGCCTTGAATAAAGGTGATTATGGACTGTGATAAACTGTGAGCTGCTGTAATTGCGGAGAGGGATCATGTAAGTTGAATGTAAAAAGGGGGCTACGCAAGCCAcagtgtgtgcatacatatttttctaCTGCAAAGAAAGATGTTTGCTTGAAAGAATGTTGTACTATACTCTGTGCTCCTGTTAGAAATAAAACCTAATGTTTCTATGAAGAA
>XM_043254149.1
TGTGGTTAATGGACCAATAGCTGTTTAAAGTTTCCACTCTTGAGATACAGAGTATTTAGATTAGACCTCAGCAAAACGAACTCAGACATCTCAAAAGGAATAGAAGACCTTactaaaagGGTTCTGCAGATACTGAACCCCAGGCCAATGCCAAGTCCAATTATGCCTGTGGATGTGGCAATGAGAATTTGTCTGGCACAATCGCCGCCTCTTCGCAGTTTCCTCAGTTCATATGAGGACTGCAAGTCCAGGAGCCTAGTCAACCATTACAAACCTTTGAGATCCTGCATCAGCACCAAGACAGACGTGGACACTGATAACATAGGGTGGAATAGTCCCgagaccaaaaacaaaaagaaagtggTTTTTGCTGATTCCAAAGGCATGTCTCTGACGGCAGTCCATGTATTCAAGGAATTCGAGGAAGACCCTATGTTAGACTTGCAGTTTGAATTATCAGACTTGGAGGACGCCATTGTGGGCCTGAAATCAGAGAAGGAGAAGAATTTGATTTTGGATTTCCCTCAGCCTTCTGCAGACTATTTGGACTTTCGGAACCGTTTAAAGAAGAGCCTGGTATGCTTGGAAAACTGTATAATTCAAGAGAGATCAGTCAATGGCACAGTCAAAGTGAGTAATGTAAGCTTTGAGAAAACGGTCCATGTGCGAATAACATTCGATTCATGGAAAAGCTACACTGATATACCATGTACATACATGAATAATGTTTATGGTTGCGAGGATGTTGACACTTTCTCGTTTTCCATCGACCTTCCAAGTTTTGTGCCCCCACATGAGCATGTGGAGTTCTGCCTATCCTATAAAACTCATGATAGCACATACTGGGACAATAATGATGGCAAAAATTACAAGCTGGTACATGCAGAGAATGACCCCAGCCAGACCAGTGTAACCCAAAAGACGGCAACAGATTTCAAGAATCAAGGCAAACGGCCAGAGATGGAATTTGATCAGTTTGGGAGCCCGAGAACATCTAGTGGATTCTTCCCTGAGTGGCAGAGTTGGGGTCATATTGAAAACACCACCCCCTACTGGTGACAGCTCTAGACCTCCGATGAACTTGGAAGTAAATGTTGTAACAAGGACAAATGCAAATGGTTTCAGAACTGACTTTTGAAAAGTCTAAAGAGTAAAGATTAGCAATGATGTCCTCAAAAGTGTTGGCCATTTTCATTCTGtccaaattaattaaatgttgggGTATGATTCTGAGAAACAcaaaatttagattaaaataagaAGTCTGGGCTCTATGCAACTTTGAGACTAACCGTGACAGTAACACAGAATGAAAAATGTTGGTTTATGTAATTTTCTAATTTTGTAGCACACTACGTATGCTATTTCGTAGATCTGACATGTGGTAAACCAATAATTTTCATAACATAGATGCCTTCCTTTGTGTTATTCTGTGATTAACTGTTATACAATGACATTTTGGATATCTTTCATCAAGATTTCCTTGTATGAAGTGAGCAACTAGCATTTGCTCTGAAATAGATTCTGCAACATTCTGTAACATTTTGTTACCTTGAAGGGTAATAATTTTGTTACTCTATCTAAAGTCACAGAATTTTGGGAATCCTGTTTTCGTCAAGTCGTCtgtaaagggatagttcaacccaaaattaaatttctgtcatttattcaacctccaaacatatatacatttcctttattttaacaaaatcaaagaaatattggaatcattaaataaaatgtgggTTTTTTGCCCATTTAATGAAAGTGTTATGGATCCcactgacttttattttatggaCAAAACAGCTCTTCAAATTATGTTCTTCAAAAAATTGTTCACTTCGGACTGATTAAAAGATGACagagtttttaattttgtgttaattGTTCCTTTAACAGCAGttcataaaatgtgtgtaattttaagATTATGGAATAATCTGGTACAGTATGAGATTGCTTCATATTGAAGTTTTTGCATCTCATATGATAGTACCAGTTTATCTGTCACTTTCTAATGAATGCACTAAGCGTGACGCATTATAAGGGAGTCCATGAGAGATAATAATGCCCATTAAGTGCTAAATCCCTGCTGTTGCACTTCCGATATTTCCGGTTCTACTTTTTAAAGCTGCACTTTcctacaaattttttttttcctacaacATTTTGCTGCTATAGTATTGTGCATGGCTGTGTGTTCTACATTGCGATTTATGACCCATGGTGTATGGAAACTCTCCAGTGTTATTTGGAGGATAGAAGAAGAGGGATTTGGATGTAACTTTATGAAGGCCATAGTAAGTCAGGATAAGTGGAGAGTAAGGAGAGTGATAATATTAAATgagattgttgtttttttcatgattGTTTTTCCCCTCTCCCGCTAGAAAAACTGGTTGAGGCCTTGAATAAAGGTGATTATGGACTGTGATAAACTGTGAGCTGCTGTAATTGCGGAGAGGGATCATGTAAGTTGAATGTAAAAAGGGGGCTACGCAAGCCAcagtgtgtgcatacatatttttctaCTGCAAAGAAAGATGTTTGCTTGAAAGAATGTTGTACTATACTCTGTGCTCCTGTTAGAAATAAAACCTAATGTTTCTATGAAGAA

Function

symbol description
ppp1r3cb Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in glycogen biosynthetic process and regulation of glycogen biosynthetic process. Predicted to act upstream of or within glycogen metabolic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3C (protein phosphatase 1 regulatory subunit 3C).

NR:

description
PREDICTED: protein phosphatase 1 regulatory subunit 3C-B

GO:

id name namespace
GO:0005977 glycogen metabolic process biological_process

KEGG:

id description
K07189 PPP1R3; protein phosphatase 1 regulatory subunit 3A/B/C/D/E

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254148.1 True 2722 mRNA 0.39 2 7489129 7492825
XM_043254149.1 False 2620 mRNA 0.38 2 7487720 7492825

Neighbor

gene id symbol gene type direction distance location
mpp3b mpp3b,LOC107669230,LOC107594152,LOC107584156,LOC107753440 coding upstream 1022 7473723 ~ 7486698 (+)
lrp2b LOC107753462,LOC107669174,LOC107584197 coding upstream 15005 7403552 ~ 7472715 (+)
muc13b NA coding upstream 101757 7378927 ~ 7385963 (+)
znf281b LOC107727698,LOC107584153,LOC107661093,LOC107594149 coding upstream 112915 7366334 ~ 7374805 (+)
svild LOC107758427,LOC107675649,LOC107561632 coding upstream 195580 7233938 ~ 7292140 (+)
ankrd1b ankrd1b,LOC107584237,LOC107669173,LOC107753461 coding downstream 56179 7549004 ~ 7552494 (+)
kif20bb kif20bb,LOC107669226,LOC107753438,LOC107584147 coding downstream 62188 7555013 ~ 7566171 (+)
pank1b pank1b,LOC107753437,LOC107669213,LOC107683711,LOC107758439,LOC107594157,LOC108413682 coding downstream 95476 7588301 ~ 7597004 (+)
slc16a12b slc16a12b,LOC107753457,LOC107669179,LOC107584144,LOC107758438,LOC108413683 coding downstream 105015 7597840 ~ 7604554 (+)
ch25h ch25h,LOC107753436,LOC107584143,LOC107669234,LOC107683723,LOC107758440,LOC107594211 coding downstream 123014 7615839 ~ 7617013 (+)
G86202 NA non-coding upstream 98739 7387668 ~ 7388981 (+)
LOC122355189 NA non-coding upstream 168129 7317500 ~ 7319591 (+)
G86141 NA non-coding upstream 189686 7297683 ~ 7298034 (+)
G86140 NA non-coding upstream 190177 7297318 ~ 7297543 (+)
G86131 NA non-coding upstream 265765 7221528 ~ 7221955 (+)
G86219 NA non-coding downstream 9753 7502578 ~ 7504499 (+)
G86275 NA non-coding downstream 208518 7701343 ~ 7701799 (+)
G86283 NA non-coding downstream 226159 7718984 ~ 7719283 (+)
G86268 NA non-coding downstream 227567 7720392 ~ 7723861 (+)
G86374 NA non-coding downstream 353733 7846558 ~ 7846862 (+)
G86143 NA other upstream 179491 7307924 ~ 7308229 (+)
G86142 NA other upstream 182872 7303138 ~ 7304848 (+)
G86029 NA other upstream 965149 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1046194 6440821 ~ 6441526 (+)
G85986 adprh,LOC108411014,LOC107726130,LOC105894051,LOC108274007 other upstream 1271153 6214919 ~ 6216567 (+)
LOC122355675 NA other downstream 322998 7815823 ~ 7844083 (+)
msrb1b msrb1b,LOC100705913 other downstream 612323 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 703139 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 1343623 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1792838 9285663 ~ 9306831 (+)

Expression


Co-expression Network