pvalb9 (pvalb9,LOC107584233,LOC107724701,LOC107594175,LOC107753418,LOC107699867,LOC108431967)


Basic Information

Item Value
gene id pvalb9
gene name pvalb9,LOC107584233,LOC107724701,LOC107594175,LOC107753418,LOC107699867,LOC108431967
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7826602 ~ 7828985 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254150.1
CCTTGCAACACGAATTTGATACACGCACAGGTAACCCAAGCATCTCTCATTGTCCGTCCCATTagcatgtacatatatataagtTGTCAGTGGATGAGAGGCGCTATCACACAGCCTTACCTCTCCTCTGGATCAGCGCGAGGACAAATCTTCACAGTTTGAATATGTCACTTACTTCCATCCTCTCAGCTGAGGCCATTGAAAATGCTGTCAAAGACTGCCAAGCTCCAGATTCCTTTTGTTATAAAAAGTTCTTCCAACTTTGTGGCCTGAGCCAGAAAAGTCCCCAAGAGGTGAAGGATGTCTTCCGCATCATAGATGAGGATAACAGCGGATTTATTGAGGAGGCTGAGCTCAAGTTCTTTCTCCAGCGATTTTTCCCGGGGGCACGAACcctgacagaaaaggagattaagAGCCTCCTTACAGCTGCAGATGATGATAGCGACGGCCGGATTGGAGTAGATGAGTTTCAGACCATGGTGTTATCCTGAAAGACTCTTTGAGCCCTCGGCTATAAACACTGCAGCGTCGGCTTTCATTTGACTTTGTACACctgatttcttttcaaaaaagaaGAATCAGCAGATAAAGTAAATGTACTTGACTTTTGAATATATGTGTCTGTTTTGTTGTCCCACATTCACCCCAAATGACCAATGGCAAAACTGTtcagggaaaataaaataaagtcactAAACTCAC

Function

symbol description
pvalb9 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in inner ear; pronephric duct; yolk; and yolk syncytial layer. Orthologous to human OCM (oncomodulin) and OCM2 (oncomodulin 2).

NR:

description
parvalbumin, thymic CPV3-like

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23925 OCM; oncomodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254150.1 True 705 mRNA 0.44 5 7826602 7828985

Neighbor

gene id symbol gene type direction distance location
ccz1 ccz1,LOC107584127,LOC107699864,LOC107753422,LOC107669215,LOC107594171 coding downstream 2299 7816015 ~ 7824303 (-)
dlgap5 LOC107669214,LOC107584128,LOC107699863 coding downstream 11263 7807662 ~ 7815339 (-)
eif2ak1 eif2ak1,LOC107753420 coding downstream 30836 7789587 ~ 7795766 (-)
usp42 usp42,LOC107753425,LOC107669212,LOC107724691,LOC107584191 coding downstream 37206 7778296 ~ 7789396 (-)
minpp1b minpp1b,LOC107669175,LOC107753454,LOC107753455 coding downstream 66085 7754857 ~ 7760517 (-)
pvalb3 pvalb3,LOC107724689,LOC107669170,LOC107753416,LOC107594172 coding upstream 2411 7831396 ~ 7833152 (-)
LOC122355674 pvalb2,LOC103030463,LOC107669167,LOC107753417,LOC107594174,LOC107724690,LOC107584231 coding upstream 6446 7835431 ~ 7837139 (-)
LOC122355671 LOC107669169,LOC107753419,LOC107584230,LOC107699851,LOC107724694,LOC108432015,LOC108273555,LOC105910193 coding upstream 9107 7838092 ~ 7839471 (-)
tecpr1a tecpr1,tecpr1a,LOC107584126,LOC107753445,LOC107594176 coding upstream 24634 7853619 ~ 7868360 (-)
baiap2l1a LOC107669227,LOC107699869,LOC107724697,LOC107584125 coding upstream 40009 7868994 ~ 7885973 (-)
G86357 NA non-coding downstream 118408 7707860 ~ 7708194 (-)
G86356 NA non-coding downstream 121119 7705221 ~ 7705483 (-)
G86354 NA non-coding downstream 127588 7698665 ~ 7699014 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding downstream 190458 7634638 ~ 7636144 (-)
G86334 NA non-coding downstream 192046 7631396 ~ 7634556 (-)
G86375 NA non-coding upstream 17496 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 58981 7887966 ~ 7888246 (-)
G86413 NA non-coding upstream 61318 7890303 ~ 7891221 (-)
G86458 NA non-coding upstream 225783 8054768 ~ 8055031 (-)
G86516 NA non-coding upstream 282208 8111193 ~ 8112713 (-)
G86203 NA other downstream 437692 7388236 ~ 7388910 (-)
G86108 NA other downstream 722384 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1155355 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1748534 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1814491 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 505419 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 682418 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 781567 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 853458 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 858513 8687498 ~ 8687570 (-)

Expression


Co-expression Network