nhlrc2 (nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116)


Basic Information

Item Value
gene id nhlrc2
gene name nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13381644 ~ 13398387 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254151.1
TGTGGGAATCATGGCGTCGTACAGCAAGCTGTCAGATCTTTTCACCATACAGAGCCAGCTAGACTATGCTTTAGAGGACGCGGCGACtcaaaaagagaaggaaaatcTCGTATATCAGTATCTGCACAAAATAGACGAAAAAGACGATTTGATTATACCGGATTTTGAAGAAGGACTGGAATGGTTGAACACAGACGCCGCACTGTCACTCAGGAAAGACTTGTCTGGCAAAGTGGTGGTGCTTGACTTCTTCACCTACTGCTGCATAAACTGCATGCACCTACTTCCTGATCTACACCAGCTGGAGCAAAGTTACACCATAGAAGATGGTCTGGTTGTCGTAGGTGTGCACTCGGCTAAATTTCCCAATGAGAAAGTCCTACAGAACGTACGCAGTGCGGTGCTGAGATACGACATCACCCATCCCGTGGTGAACGACAGCGATGCACGTCTGTGGCAGGAGCTGGAGGTGTCATGCTGGCCCACCCTAGTGGTGCTGGGACCCAGGGGAAATCTGCTTTTCTCCCTCGTGGGTGAAGGCCATCGAGAACAGCTCTTTCTTTTCACTGCGGCCTCCCTGAAGCACTATAAACAACAAGGGCTGCTCAAGGACCATGATGTGGGGATCAAACTATATAGAGACTCCCTGCCTCCCTCCATCCTCTCTTTCCCTGGGAAAATAGCCATGGACCCCAGCAGCAAGCGGTTAGCTATTGCCGACACAGGACACCACAGGGTACTGGTGGTCTCCAATACTGGGCAGCTGCTGCACACAGTAGGGGGTCCCTCAAGTGGGAGACGAGATGGAAATTTCTCTGAGGCGCAGTTCAACTCCCCACAAGGGGTGTTCATAAAGGGAGACACAGTCTACGTGGCTGACACTGAGAACCACCTTGTTAGAAAGATCAACCTTTCAGAAGAAAAAGTCTCGACCTTAGCTGGCATTGGCGTTCAAGGCACAGATAAAGAAGGTGGAGCTCTGGGACCACAACAGCCAATCAGCTCTCCCTGGGATGTTGCTCTTGGCAACACAGGTGGTGATATATTGTGGATAGCCATGGCAGGAACGCATCAGATCTGGGCTCTCTTCCTGGAGGACGGGAAGCTTCCCAAAGGGAGCGACAGCAAAAAAGGAACATGCGTGCGCTTTGCAGGCAGTGGGAATGAGGAGAACAGAAATAATGCGTACCCTCATAAAGCGGGCCTGGCCCAGCCGTCAGGCCTGGCTCTTGCCCCGACTGAGCCCTGGGAGTGTCTCTTTATCGCTGACAGTGAGAGCAGCACCATTCGTAGCCTTTCGCTGAAGGATGGCGCAGTCAAACATGTGGTGGGGGGAGAGAGAGACCCTCTGAATCTGTTCGCTTTTGGAGACGTTGATGGTAAAGGCATAGATGCAAAACTGCAGCATCCATTGGGAGTGTCCTGGGAAGAGGGCAACAGTCTTCTCTATGTAGCCGATTCGTACAATCACAAGATCAAAGTGGTAGATCCGAAAACTAAGCAGTGCAGGGTGCTTGCAGGCACAGGGAATGCTGGGAACGGACTTGGCCCGAGCTTTCTGGAGTACAGCTTCAACGAACCTGGAGGCTTGTGTCTGGGTGAAGGAGGAAAGCTGCTGTATGTGGCGGACACCAACAACCACTGCATCAAAGTCCTGGACCTGGAGACCAAAACTGTCTCTTTGTTTCCGATTGTAGTTCCGCACGAGGTTGATGCTGTCAAAACCACAAGCAGCACACCTGCAGTCAGAAAGCTTCCCAAGCTTCCCAAATCAGCCCCTGTCCTTACGATGCCATCAATCGCAGTTTCTTCAGGACAGTCAGTGACTCTTTTGCTGAAATTGGCACTTCCGCCTGGGACCAAGCTCACCGAAGAAGCCCCTAGTTTCTGGAGCTTATCTGCAGAAGGTAATGAGTGGTTACTGGAAGAGCGAGCTGTGACGGGGAGCATCAGTGATCTCTCTGAACCGGTCTCGATCGTCTCATCCATCCCAGCGGCCCCTGTGGCCCGAAACCCCACACTGACGCTCGACGCCTGGGTCTACTGCTGCCTTTCTGAGGGCGGGGCTTGTATGATGAAGGCAGTGTCCTTTAAACAGCCTTTTCTGATTGGCTCTACATCTCCGGAAGGTTCTGTTGCCGTGACGCTGGAGCATGCCTTTTAAAATAAGCGTCCACCCAAAGGATCTTGGAGCACATCTAAAGGGATACTTtaccaaaaaatttaattctgtccCCGTTTACTCATcctaaaatgttgttccaaaactgtCTGAATTTCTTCAGTGAAGCACAAAAGAATGTTTTGAAGAACGCTGACAATTTTTTTCCTTATAATTCTGCAAAAAAGAGTTAAGCTAAACTTCATCTGTTACAAGtatatatatctcacaaatTGCTGTTTTCTCACTATTCTGGGGGGTAACGTCAGGACTGTGAGAAAAGTTTCAATTGTGAGATACAACCTTAGTTGCGGTGGGGAGAAAAAGGTCAAAAAACGGTGGAAAAaaattatctgtttatttttgtatcctGCCAGTGAAAACAAGTCAATTTTTGACCCCGctgactttcattatatggacaaaaatagatttttccttccatagaagaaaaacagaacGACGTGAGGATGAGCAAATGATTTTTTAGATGAATATCCTATTAACATTCAAATCACATCCTGCGGTTAACACATACTGTAGTAATCAGACACTTCACATGCTCGTCATCAGGCTAATCAGACAGATTGCAAATACTAATTGTAGAGTCAGGATCTGACTGTTAAATCTTGACAAATATTGAACAAAGTGCCTCATTCTCAtcagcaatatttttttgtggttcTGCTAGGGGTGTTTCACATGATTAAGCTTGTGTAATGCCTTTGTCAAATAGCCTGGTATCATTATCAGCCATCTTCATTCAGTCACTCACATGCTCTCGCacaataatatttgaaaaaaaatgcagtgtagTGTAAAATGTAGCCAGTGTCAGCTGTTCTGACAGCCGTTTATGGTTGGCTTGgctcatattattattatttcccgcactgcatttttttctcctaaCTATATGATACCGTAAGTCAGTCTTGTAAATGTGCAGTCAGacttaatgttatttaattggaattatttattattgtttaccAGGCTTGAGTGCCTTTTCAATGAGCAATACACTTTGTATGAATGAACTATGTGTTGGAAATCAAGCGGCGACATTAATTTCAGTGTTCAGCCTCGAACGGAATGGAATCATGGGCCATTTACATCTACATATTAATGCTTTCTGAAAGAACAGCCTCTCGGTGCTGTTAAACATTAACAATGGAGCTACAATGTATTCCTGATACATGATAGATCATGCGCTTgcaaatcatgcccagtgtgaATCAGACACTGTAGAAATTTCCTCTAAAATGGTTTTCGCTTGCTATTCCTGTCGCAGTTCTAGCCtgtaaactatttaataaaaacaaaatttatcTCTCACTCTTTTGAGGGCAGCTCTTTTATACAGCCTCCAAATTCTGCACTTTAACAGATTAATTTGGATGCAGTGGActaataaagtttattttcccAGCATTTGTGTGTTCAGCATTTTCATATCCTCTTCACTACACACAAGGACCAGTGCATTCATTGTAAATGACAAAAGACCATCTGTTCCAGCAGAGATGCTTCATGGTGAGTTTtctgtggtcatttttttttaattgacttttttttttgaggtttgtaaattaaaattaaatcataataaaaataaagcaggtATTATGCACCAA

Function

symbol description
nhlrc2 Orthologous to human NHLRC2 (NHL repeat containing 2).

NR:

description
NHL repeat-containing protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254151.1 True 3798 mRNA 0.45 11 13381644 13398387

Neighbor

gene id symbol gene type direction distance location
adrb1 adrb1,LOC107755541,LOC107566002,LOC107702449,LOC107689959,LOC107581665 coding downstream 6156 13372489 ~ 13375488 (-)
tdrd1 LOC107702448,LOC107755540,LOC107566104,LOC107581549,LOC107708149,LOC107689961 coding downstream 46852 13325153 ~ 13334792 (-)
vwa2 vwa2,LOC107755546,LOC107702446,LOC107707947 coding downstream 56949 13307621 ~ 13324695 (-)
LOC122355472 NA coding downstream 85390 13293736 ~ 13296254 (-)
trub1 trub1,LOC107755443,LOC107689966,LOC107702428,LOC107708440 coding downstream 178774 13199764 ~ 13202870 (-)
plekhs1.1 LOC107566815,LOC107755416,LOC107702419 coding upstream 7406 13405793 ~ 13410281 (-)
LOC122355682 NA coding upstream 15794 13414181 ~ 13418256 (-)
LOC122355076 LOC107566710,LOC107684141,LOC107581554 coding upstream 20330 13418717 ~ 13422958 (-)
casp7 casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 coding upstream 38520 13436907 ~ 13444732 (-)
crygmx crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 coding upstream 155169 13553556 ~ 13555025 (-)
G88003 NA non-coding downstream 13324 13365953 ~ 13368320 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 573998 12804696 ~ 12807646 (-)
LOC122355629 NA non-coding downstream 742908 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 894249 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 1034578 12344898 ~ 12347066 (-)
G88019 NA non-coding upstream 35507 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 60069 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 61758 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 310668 13709055 ~ 13712541 (-)
G88146 NA non-coding upstream 426213 13824600 ~ 13894358 (-)
G87845 LOC107675011 other downstream 628966 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 706172 12649383 ~ 12675472 (-)
G87608 NA other downstream 1430489 11948540 ~ 11951155 (-)
G87569 NA other downstream 1546032 11832879 ~ 11835612 (-)
G87489 NA other downstream 2059041 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 25921 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 125281 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 211033 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 574495 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 749660 14148047 ~ 14150005 (-)

Expression


Co-expression Network