psmd11b (psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212)


Basic Information

Item Value
gene id psmd11b
gene name psmd11,psmd11b,LOC108426450,LOC107743775,LOC107568948,LOC107691212
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 12472889 ~ 12480834 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254154.1
TTTTTGAATAGGGAAGATGGCAGCCGCGGCAGTGGTGGAGTTTCAGAGAGCTCAGTCTCTCATCAGCACAGACAGAAACGCTTCTATTGATATTTTACATTCAATAGGTAAAGCTGTCTTTAGATCATTTGTGAGGCGAGATGTCCAGGAAGATGATGAAGAGGCGGTTCGTGTCAAGGAGCAGAGCATCCTGGAGTTGGGGACTCTCCTGGCTAAGACGGGACAAGCCGCAGAGCTTGGTGGCCTGCTGAAATTTGTGAGGCCTTTCCTGATCTCCATAAGCAAGGCAAAGGCAGCACGGTTGGTGCGCTCGCTTCTGGATCTATTTCTGGACATGGAGGCTGCCACTGGCCAGGAGGTTGAACTCTGTCTGGAATGCATTGAATGGGCTAAAGCTGAGAAAAGAACTTTCCTCAGACAAGCCCTTGAGgcTCGACTCATCTCACTCTACTTTGACACAAAGAGATATCAGGAAGCCCTTCAGCTGGGTTCCCAGTTGCTTCAGGAGCTGAAGAAGATGGATGATAAAGCTCTGCTGGTGGAGGTTCAGCTGCTGGAGAGTAAAACCTACCACGCTCTCAGCAACCTTCCCAAAGCCAGGGCTGCCCTCACCTCAGCCAGGACCACCGCCAATGCCATCTACTGTCCCCCAAAACTCCAGGCGGCTCTTGATATGCAGTCAGGTATCATTCATGCAGCTGAGGAGAAAGATTGGAAAACTGCCTACTCTTACTTCTTTGAGGCTTTTGAGGGCTACGACTCCATCGACAGCCCCAGGGCAGTTACCGCACTGAAATACATGCTCCTCTGCAAGATCATGCTCAGCTCGCCAGAGGAGGTTCAGGCCTTGATCAGTGGCAAACTGGCTCTGCGATACGCGGGGCGACAGACCGATGCACTGAGATGTATAGCACAAGCCAGCAAGAACAGATCATTAGCAGATTTTGAAAAGGCCCTCACGGAGTACACTAAAGAGCTGAGAGACGATCCCATCATCAACACACATTTGGCCAAGCTTTATGACAACTTGCTGGAACAGAATCTCATTCGGGTCATTGAACCCTTTTCCAGAGTAcagATAACGCATATAGCAGGCCTCATCAAACTTTCAAAGGATGATGTTGAGAGAAAACTGTCACAAATGATCCTGGACAAAAAGTTTcatgGCATTCTTGACCAAGGCGAAGGAGTGCTCATCATATTCGAAGAGCCCCCTGTGGACAAGACTTACGAGGCAGCTCTAGAAACCATACAGAACATGAGCAAAGTTGTGGATTCACTGTACAACAAGGCTAAGAAGTTAACATAGAATAAACATCCGaggctgctgctgtgtgaaatGGTTGTATGCGTGTGAGTTTGcccgtgtgtatgtgtgtatggcCAACATGTGGAACTTTTTTCTCACAGCAAAAAGGGACAACATTGAGCAAGATCTACTTGTTCCCCCCAGTTGagagtttttaatgtttcttttctttcaaatgGACAATTTCATCTTTCTGATcctctgaattttttttttttgttcttctctgTATCTCTCAACGGCCAGCACAGGCCATCAGGGAATGTTGTACAACTACAATAAAATCCTAAAATGTCATATAGAACTGTATAGCTCTTctacatttaaagttttttaattaCAGCAACTTTGTGATACAGACTCTTGGGTTTCGGTTTTCTGCGGTTCATCAGTTGTTTGCAGTAGtgcatatctttttttctttttcccctcaTTTTATAGACGCACTTTCTAAATGATTGTTGTAGATGACAAATTGAAAGGAACTTGGCTGTAAGGAAGAGGCTCTGTAATAAGCACAGTTGCCAATCATATTACCATACACACTAGAAAGTTGTTTTCTAAGTTCGTACGATCGAGTATTGTTTGCCGTTTACTTTTGCAGTATACCGTCTTTACGGTTTTGTATCTACAGTGTACTGTTTGCCAAGTAGGGTGGTTATATTTAACGGCCCAATCCTACAAAAGTTTTAGTCCTGTTTGATTAAACTAACCTTTTCCCTAACATACATTTATGTCTGCACTGAagtttcttatttttcattcattcttttgttaTTTCTGATCTTTTCGGATCAGCATCTCAATGCAAACTCCATTTCCTCTTTGCCAGCAGTAGACCATTGTATGTTAAATACCCTCAATATTGTTTTAAGCTTcaatgttttgtacattttttttttaactcctgTAAATGTATACGTTCACGCAtcctttgcaaaaaaataatttatgttttcatttattctgtttagtgtgcaattataaatattcaacagcaacaacaacaaagtaaTTTCTTGTGggagaatgtttttaaatgattttttgaaGTCCAGTGTTGATTTGAGAGCTTCTTGCATGTGATTGTGATTGATTTGTAGTGGCAATCTAGCATTGGTCATTGACAATTGAGAATTTAGTGAGACATTAAACGCTTtggaaagtattttttttttattttattttattttgttttgtgcctAACATTGAAAAATGGTCCACAAAAGTCCTCTGTCCAAAGCTCAATTATTGAAATTTTGGTGTAAGCGGATTTAAGTTTTAAGGAACAtgactgttttatttttgtatgagtTGGCCTGATCActaattaaagtgttttgattACA
>XM_043254155.1
GCAAGTGTTTGTGGGTAGTGAGATTTTTGAATAGGGAAGATGGCAGCCGCGGCAGTGGTGGAGTTTCAGAGAGCTCAGTCTCTCATCAGCACAGACAGAAACGCTTCTATTGATATTTTACATTCAATAGTGAGGCGAGATGTCCAGGAAGATGATGAAGAGGCGGTTCGTGTCAAGGAGCAGAGCATCCTGGAGTTGGGGACTCTCCTGGCTAAGACGGGACAAGCCGCAGAGCTTGGTGGCCTGCTGAAATTTGTGAGGCCTTTCCTGATCTCCATAAGCAAGGCAAAGGCAGCACGGTTGGTGCGCTCGCTTCTGGATCTATTTCTGGACATGGAGGCTGCCACTGGCCAGGAGGTTGAACTCTGTCTGGAATGCATTGAATGGGCTAAAGCTGAGAAAAGAACTTTCCTCAGACAAGCCCTTGAGgcTCGACTCATCTCACTCTACTTTGACACAAAGAGATATCAGGAAGCCCTTCAGCTGGGTTCCCAGTTGCTTCAGGAGCTGAAGAAGATGGATGATAAAGCTCTGCTGGTGGAGGTTCAGCTGCTGGAGAGTAAAACCTACCACGCTCTCAGCAACCTTCCCAAAGCCAGGGCTGCCCTCACCTCAGCCAGGACCACCGCCAATGCCATCTACTGTCCCCCAAAACTCCAGGCGGCTCTTGATATGCAGTCAGGTATCATTCATGCAGCTGAGGAGAAAGATTGGAAAACTGCCTACTCTTACTTCTTTGAGGCTTTTGAGGGCTACGACTCCATCGACAGCCCCAGGGCAGTTACCGCACTGAAATACATGCTCCTCTGCAAGATCATGCTCAGCTCGCCAGAGGAGGTTCAGGCCTTGATCAGTGGCAAACTGGCTCTGCGATACGCGGGGCGACAGACCGATGCACTGAGATGTATAGCACAAGCCAGCAAGAACAGATCATTAGCAGATTTTGAAAAGGCCCTCACGGAGTACACTAAAGAGCTGAGAGACGATCCCATCATCAACACACATTTGGCCAAGCTTTATGACAACTTGCTGGAACAGAATCTCATTCGGGTCATTGAACCCTTTTCCAGAGTAcagATAACGCATATAGCAGGCCTCATCAAACTTTCAAAGGATGATGTTGAGAGAAAACTGTCACAAATGATCCTGGACAAAAAGTTTcatgGCATTCTTGACCAAGGCGAAGGAGTGCTCATCATATTCGAAGAGCCCCCTGTGGACAAGACTTACGAGGCAGCTCTAGAAACCATACAGAACATGAGCAAAGTTGTGGATTCACTGTACAACAAGGCTAAGAAGTTAACATAGAATAAACATCCGaggctgctgctgtgtgaaatGGTTGTATGCGTGTGAGTTTGcccgtgtgtatgtgtgtatggcCAACATGTGGAACTTTTTTCTCACAGCAAAAAGGGACAACATTGAGCAAGATCTACTTGTTCCCCCCAGTTGagagtttttaatgtttcttttctttcaaatgGACAATTTCATCTTTCTGATcctctgaattttttttttttgttcttctctgTATCTCTCAACGGCCAGCACAGGCCATCAGGGAATGTTGTACAACTACAATAAAATCCTAAAATGTCATATAGAACTGTATAGCTCTTctacatttaaagttttttaattaCAGCAACTTTGTGATACAGACTCTTGGGTTTCGGTTTTCTGCGGTTCATCAGTTGTTTGCAGTAGtgcatatctttttttctttttcccctcaTTTTATAGACGCACTTTCTAAATGATTGTTGTAGATGACAAATTGAAAGGAACTTGGCTGTAAGGAAGAGGCTCTGTAATAAGCACAGTTGCCAATCATATTACCATACACACTAGAAAGTTGTTTTCTAAGTTCGTACGATCGAGTATTGTTTGCCGTTTACTTTTGCAGTATACCGTCTTTACGGTTTTGTATCTACAGTGTACTGTTTGCCAAGTAGGGTGGTTATATTTAACGGCCCAATCCTACAAAAGTTTTAGTCCTGTTTGATTAAACTAACCTTTTCCCTAACATACATTTATGTCTGCACTGAagtttcttatttttcattcattcttttgttaTTTCTGATCTTTTCGGATCAGCATCTCAATGCAAACTCCATTTCCTCTTTGCCAGCAGTAGACCATTGTATGTTAAATACCCTCAATATTGTTTTAAGCTTcaatgttttgtacattttttttttaactcctgTAAATGTATACGTTCACGCAtcctttgcaaaaaaataatttatgttttcatttattctgtttagtgtgcaattataaatattcaacagcaacaacaacaaagtaaTTTCTTGTGggagaatgtttttaaatgattttttgaaGTCCAGTGTTGATTTGAGAGCTTCTTGCATGTGATTGTGATTGATTTGTAGTGGCAATCTAGCATTGGTCATTGACAATTGAGAATTTAGTGAGACATTAAACGCTTtggaaagtattttttttttattttattttattttgttttgtgcctAACATTGAAAAATGGTCCACAAAAGTCCTCTGTCCAAAGCTCAATTATTGAAATTTTGGTGTAAGCGGATTTAAGTTTTAAGGAACAtgactgttttatttttgtatgagtTGGCCTGATCActaattaaagtgttttgattACA

Function

symbol description
psmd11b Predicted to enable structural molecule activity. Predicted to be involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome regulatory particle, lid subcomplex. Orthologous to human PSMD11 (proteasome 26S subunit, non-ATPase 11).
psmd11 Predicted to enable structural molecule activity. Involved in proteasome assembly; stem cell differentiation; and ubiquitin-dependent protein catabolic process. Located in membrane and nucleus. Part of proteasome accessory complex.

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 11B

GO:

id name namespace
GO:0048863 stem cell differentiation biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0043248 proteasome assembly biological_process
GO:0022624 proteasome accessory complex cellular_component
GO:0005829 cytosol cellular_component
GO:0005634 nucleus cellular_component

KEGG:

id description
K03036 PSMD11, RPN6; 26S proteasome regulatory subunit N6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254154.1 True 2658 mRNA 0.41 13 12472889 12480811
XM_043254155.1 False 2657 mRNA 0.42 13 12472889 12480834

Neighbor

gene id symbol gene type direction distance location
uts2r2 ogfod3,zgc:195081,LOC107743776,LOC107691211,LOC106959269 coding downstream 682 12448036 ~ 12472207 (-)
dhx8 dhx8,LOC107706906 coding downstream 360114 12103878 ~ 12112775 (-)
psme3 psme3,LOC107669474,LOC107582747,LOC107706898,LOC107727296,LOC107666924 coding downstream 536433 11932423 ~ 11936456 (-)
chmp2a bc2,chmp2a,LOC107552765,LOC107727322,LOC107582752,LOC106589279 coding downstream 649621 11820541 ~ 11823268 (-)
zeb1b zeb1b,LOC107706887,LOC107669492,LOC107552760,LOC107666916,LOC107582755,LOC107727309 coding downstream 730928 11685789 ~ 11741961 (-)
myo1d myo1d,si:ch211-94l19.4,LOC107743773,LOC107677861,LOC107675020 coding upstream 7935 12488769 ~ 12548929 (-)
LOC122355678 LOC107675002,LOC107754109,LOC107566636 coding upstream 68822 12549656 ~ 12552715 (-)
pdk2a LOC107754097,LOC107565668,LOC107568951,LOC107677886,LOC107743772,LOC103046317,LOC108426453 coding upstream 75848 12556682 ~ 12564039 (-)
osbpl7 osbpl7,LOC107565688,LOC107677882,LOC107743767,LOC107754093 coding upstream 173166 12654000 ~ 12665037 (-)
mrpl10 mrpl10,LOC107566794,LOC107754119 coding upstream 185281 12666115 ~ 12667979 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 125823 12344898 ~ 12347066 (-)
G87660 NA non-coding downstream 320152 12152240 ~ 12152737 (-)
G87659 NA non-coding downstream 321254 12151299 ~ 12151635 (-)
G87610 NA non-coding downstream 502065 11970529 ~ 11970824 (-)
G87607 NA non-coding downstream 525155 11946907 ~ 11947734 (-)
LOC122355629 NA non-coding upstream 132316 12613150 ~ 12638736 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding upstream 323862 12804696 ~ 12807646 (-)
G88003 NA non-coding upstream 885119 13365953 ~ 13368320 (-)
G88019 NA non-coding upstream 953060 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 977622 13458456 ~ 13459865 (-)
G87608 NA other downstream 521734 11948540 ~ 11951155 (-)
G87569 NA other downstream 637277 11832879 ~ 11835612 (-)
G87489 NA other downstream 1150286 11321423 ~ 11322603 (-)
LOC122355648 cox7a3,LOC107550034,LOC107582778,LOC107749383,LOC107728726,LOC108429329,LOC108273985,LOC107700119 other downstream 1427000 11042888 ~ 11045889 (-)
cript cript,LOC107582781,LOC107728714 other downstream 1465935 11005006 ~ 11006954 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other upstream 168549 12649383 ~ 12675472 (-)
G87845 LOC107675011 other upstream 271070 12751904 ~ 12752678 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 943474 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 1042834 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 1128586 13609420 ~ 13691340 (-)

Expression


Co-expression Network