foxl3 (si:dkey-7e14.3,LOC107731394,LOC107594215,LOC107669190,LOC107734180,LOC107584227,LOC108431962)


Basic Information

Item Value
gene id foxl3
gene name si:dkey-7e14.3,LOC107731394,LOC107594215,LOC107669190,LOC107734180,LOC107584227,LOC108431962
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 8049576 ~ 8052386 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254182.1
gacaaaacaaaacatccaaTCCCGAGTAGGACCGGACCACCCAGGAATCAaagagtgaatgagtgagtaGAGTTTGTTGATCACGCCCCGGGTTCAGACGTTTACAGTAGTTCCAGTCATGTACGCCCATTATATGAGCATCTGAGCAGCAGCCGGTCACTtcccctacacacacacacacacacacacacacacacacactcacaaacacttcTCATGAGAGCTGCATCATTTGTCTTGGCCAGCTAGAGCCTTTCTCGTTACTACAAACCATAAAGGCTTGCCACCCTGGACGCGTGATGATGTTTGACAGCTCGCAATATCCTTATAACTGTTTTAACTATGATGGAGAAGGATACCCCTCATGTGGCACTGATGAAGAGAAGAAAGTGTGTCGACCAGCTTACAgTTACATTGCACTAATAGCAATGGCCATACAGCAGAGCCCAGAGAACAAAGTTACCCTATCAGGAATCTACGAGTTCATCATGAAGAGATTTCCTTATTACAGATCCAACCAGAGGGCTTGGCAAAACTCAATTCGTCATAACCTCTCTCTAAACAGCTGCTTTATAAAGGTGCCCCGTACAGAAGGTAACGAGAAAGGAAAAGGTAATTACTGGACATTCGCCACGGGCTGCGAGTCCATGCTGGACCTCTTTGAAAACGGCAACTTTCGTCGCCGCCGCCGCAGACGCAACTTAAAAATGGGCCTGAAGGAGCCAGCCGAACCCTTTGTTGCCATGGACACTCATCAGGGCATTGCAGTAAGACCCACGGATTCAGATTCTTTCTGTCCTGTGAACGCTAGTCGCGGACCGGCTCAAAACAACCCGCCTCTCAGCAAACCCGAGCCCGAGATCAAATTCAGCATTGACTACATTCTCTCCACGCCGGACCCTCTGCCCGGGTTCAGAGCCCCTAACGGTGCAGCTGGAGCTGTGATCCACCATCTGGAGCCACAACATCTCAATCTACACTTCTGGACCATGTAACCAAAACGCAGATCAGTAAATACCCTGATGTTAAAACAGTCAGTGCTCAGTCTTTCCCATAATGCAAATCGGCTTGTCAGTAGGCACATGCAGTTTGTTGCGTGCTAGTGCTCCCGTCAGTAAGTCTGCTGTCGCTCATGTTAGCAaagctaaaaatatacataGTGACTTAGAAGTATAATACtatttaatgataatgataataatttgaggagatatatatatatacacataataatgcTCTCTTTGTAAAGGtacaatgcacattttttaatataaaacctaaaatgtgtttttatgtcacTATTAATGAGGACAGTATGATGAACATCTGTCTTTAAATttccactttagcacaatcaagTACACTTCAGTATATCTTTAGTTGGATTCAGCACTACTTCCTGCTCAGTgaaagtgcattaagtacaaaacGAATTGTTCCATGCAGACTTTAAGTGTACCAGTACACCAAACGTAAAAATCGCAGGGTATTATTATTaagcacataaatatgtaaatgtatttgtagtatacttagtatgacataaatgtatttcaaatacattttagtgtatttattttccacTAGGGTAGACAGTTGATTTTGATGAAAatcaatcatattttttaatgtcaaacataCTGTAGGCAATACTTTAGAATAAGTctccattagttaacattaaataataacaaataatttattcttaaataatgttaaacGTATTAAtgaaattagtgctgtcaaaaaatgaatctcatctaa

Function

NR:

description
forkhead box protein L1-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254182.1 True 1764 mRNA 0.41 3 8049576 8052386

Neighbor

gene id symbol gene type direction distance location
fam20cb fam20c,fam20cb,LOC107669229,LOC107734234,LOC107699871,LOC105888715,LOC107731385 coding upstream 3537 8009380 ~ 8046039 (+)
LOC122355373 trrap,LOC107669193,LOC107699870,LOC107734152 coding upstream 78022 7902114 ~ 7971554 (+)
tmem130 tmem130,LOC107669166 coding upstream 159089 7886687 ~ 7890487 (+)
bhlha15 bhlha15,LOC107669184,LOC107753453,LOC107584229,LOC107594213,LOC107699868 coding upstream 194738 7851508 ~ 7854838 (+)
rsph10b LOC107669165,LOC107584188,LOC107753448 coding upstream 241966 7802834 ~ 7807610 (+)
noxo1b LOC107669189,LOC107734176,LOC107584122,LOC107699855,LOC107731427,LOC107594217 coding downstream 30248 8082634 ~ 8085604 (+)
rnf151 rnf151,LOC107584225,LOC107669188,LOC107594218,LOC107734173,LOC107731429,LOC107699857 coding downstream 33705 8086091 ~ 8089327 (+)
neurl2 neurl2,LOC107669209,LOC107734228,LOC107699858,LOC107594180 coding downstream 50313 8102699 ~ 8105036 (+)
meiob LOC107584223,LOC107669206,LOC107734178,LOC107731419,LOC107594203 coding downstream 54800 8107186 ~ 8110679 (+)
mlst8 mlst8,LOC107699873 coding downstream 58541 8110927 ~ 8115043 (+)
G86374 NA non-coding upstream 202714 7846558 ~ 7846862 (+)
G86268 NA non-coding upstream 325715 7720392 ~ 7723861 (+)
G86283 NA non-coding upstream 330293 7718984 ~ 7719283 (+)
G86275 NA non-coding upstream 347777 7701343 ~ 7701799 (+)
G86219 NA non-coding upstream 545077 7502578 ~ 7504499 (+)
G86460 NA non-coding downstream 4545 8056931 ~ 8060176 (+)
G86540 NA non-coding downstream 145708 8198094 ~ 8198410 (+)
G86536 NA non-coding downstream 151197 8203583 ~ 8204143 (+)
LOC122355856 NA non-coding downstream 151759 8204145 ~ 8206748 (+)
G86577 NA non-coding downstream 239457 8291843 ~ 8292062 (+)
LOC122355675 NA other upstream 205493 7815823 ~ 7844083 (+)
G86143 NA other upstream 741347 7307924 ~ 7308229 (+)
G86142 NA other upstream 744728 7303138 ~ 7304848 (+)
G86029 NA other upstream 1527005 6521829 ~ 6522571 (+)
G86019 LOC107570179 other upstream 1608050 6440821 ~ 6441526 (+)
msrb1b msrb1b,LOC100705913 other downstream 52762 8105148 ~ 8106780 (+)
hbbe2 hbbe2,LOC107734191,LOC105910203 other downstream 143578 8195964 ~ 8197904 (+)
arsg arsg,LOC107734203,LOC107660857,LOC107692046,LOC107554066 other downstream 784062 8836448 ~ 8852449 (+)
pkd1b LOC107723630,LOC107665861,LOC107556563 other downstream 1233277 9285663 ~ 9306831 (+)
mfsd8 mfsd8,LOC107738985,LOC107556570 other downstream 1604283 9656669 ~ 9664139 (+)

Expression


Co-expression Network