pvalb3 (pvalb3,LOC107724689,LOC107669170,LOC107753416,LOC107594172)


Basic Information

Item Value
gene id pvalb3
gene name pvalb3,LOC107724689,LOC107669170,LOC107753416,LOC107594172
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 7831396 ~ 7833152 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254202.1
CCGTCATGCGGTATCCATTACATTATGCCTTATATTTCGGTTGAGTAGTGGTATATAAGGTGGAAGCCACGGAGTTGGTGCTCACTGCAGTAGCCAGTTTCATCCCTGCGAATCCAAACCCAAACCCTAAGGACAACCAGAGGCTAACCATGGCATTCGCTGGTATTCTGAATGAGGCTGACATCACTGCAGCCCTGCAGGCCTGCCAAGCTGCTGACTCCTTCGACTACAAGACCTTCTTCGCCAAGGTCGGTCTGTCTGCCAAGACTCCTGATGACATCAAGAAGGCCTTTGCTGTCATTGACCAGGACAAGAGCGGCTTCATTGAGGAGGATGAGCTTAAGCTGTTCCTGCAGAACTTCTCTGCTGGCGCCAGGGCACTCACTGATGCAGAGACAAAGACCTTCCTGAAAGCTGGAGACTCTGATGGTGATGGCAAGATTGGAGTTGATGAGTTCGCTGCCTTGGTCAAAGCATAAATGGCACCTGACCAACAACTTTTGCTGACAATCAGTATTGTAGCCTGAGATCTCCACTTTTTTATCGGGGTGGCTGATTTTTATACTAACTGAATTCGAACTGTCCGCTCCCATGCTGCACCCGGTCCACAATGACTGTCAACGTCACAAGGTCTTTTGCGTTGTAGATATACATGTTGGTTTCTGTAAAATCTTTGATGCTGTTTTTGGGAAAGGacaatgagaaaataaacactatttttca

Function

symbol description
pvalb3 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm and nucleus. Is expressed in hypaxial myotome region and myotome.

NR:

description
parvalbumin isoform 1b

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254202.1 True 723 mRNA 0.47 5 7831396 7833152

Neighbor

gene id symbol gene type direction distance location
pvalb9 pvalb9,LOC107584233,LOC107724701,LOC107594175,LOC107753418,LOC107699867,LOC108431967 coding downstream 2411 7826602 ~ 7828985 (-)
ccz1 ccz1,LOC107584127,LOC107699864,LOC107753422,LOC107669215,LOC107594171 coding downstream 7093 7816015 ~ 7824303 (-)
dlgap5 LOC107669214,LOC107584128,LOC107699863 coding downstream 16057 7807662 ~ 7815339 (-)
eif2ak1 eif2ak1,LOC107753420 coding downstream 35630 7789587 ~ 7795766 (-)
usp42 usp42,LOC107753425,LOC107669212,LOC107724691,LOC107584191 coding downstream 42000 7778296 ~ 7789396 (-)
LOC122355674 pvalb2,LOC103030463,LOC107669167,LOC107753417,LOC107594174,LOC107724690,LOC107584231 coding upstream 2279 7835431 ~ 7837139 (-)
LOC122355671 LOC107669169,LOC107753419,LOC107584230,LOC107699851,LOC107724694,LOC108432015,LOC108273555,LOC105910193 coding upstream 4940 7838092 ~ 7839471 (-)
tecpr1a tecpr1,tecpr1a,LOC107584126,LOC107753445,LOC107594176 coding upstream 20467 7853619 ~ 7868360 (-)
baiap2l1a LOC107669227,LOC107699869,LOC107724697,LOC107584125 coding upstream 35842 7868994 ~ 7885973 (-)
nptx2b nptx2,nptx2b,LOC107734170,LOC107669183,LOC107594214,LOC108431963 coding upstream 59633 7892785 ~ 7897664 (-)
G86357 NA non-coding downstream 123202 7707860 ~ 7708194 (-)
G86356 NA non-coding downstream 125913 7705221 ~ 7705483 (-)
G86354 NA non-coding downstream 132382 7698665 ~ 7699014 (-)
G86333 acta2,zgc:86709,actc1a,actc1,ACTC1,LOC107594158,LOC103374497,LOC108414322,LOC106531354,LOC107683715 non-coding downstream 195252 7634638 ~ 7636144 (-)
G86334 NA non-coding downstream 196840 7631396 ~ 7634556 (-)
G86375 NA non-coding upstream 13329 7846481 ~ 7846832 (-)
G86412 NA non-coding upstream 54814 7887966 ~ 7888246 (-)
G86413 NA non-coding upstream 57151 7890303 ~ 7891221 (-)
G86458 NA non-coding upstream 221616 8054768 ~ 8055031 (-)
G86516 NA non-coding upstream 278041 8111193 ~ 8112713 (-)
G86203 NA other downstream 442486 7388236 ~ 7388910 (-)
G86108 NA other downstream 727178 7103880 ~ 7104218 (-)
G86049 LOC101886504,LOC101886427 other downstream 1160149 6670319 ~ 6671247 (-)
LOC122355418 pnmt,LOC107571312,LOC107676565 other downstream 1753328 6051168 ~ 6078068 (-)
G85930 LOC107711793,LOC107755027 other downstream 1819285 5990913 ~ 6012111 (-)
cpped1 cpped1,LOC107584109,LOC107669238,LOC107554009 other upstream 501252 8334404 ~ 8359992 (-)
LOC122355061 tnfrsf17,LOC107554040,LOC107692075,LOC107690067,LOC107584106,LOC107734209 other upstream 678251 8511403 ~ 8513265 (-)
G86783 cby1,LOC107554026,LOC107734186,LOC107584208,LOC107690074 other upstream 777400 8610552 ~ 8612445 (-)
plbd1b LOC107578697 other upstream 849291 8682443 ~ 8687548 (-)
trnar-ccu_66 NA other upstream 854346 8687498 ~ 8687570 (-)

Expression


Co-expression Network