calm2b (calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206)


Basic Information

Item Value
gene id calm2b
gene name calm1,LOC105896953,LOC107670363,LOC102778633,LOC102293206
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 10944753 ~ 10949041 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254204.1
GCGGATGGATACAGGAAGATGGGAGGTGTTTATGTACGACCGTTAAGGCGGGTCTATACCAATATTCCGACCACCATTTGTGAATCTCTCACGGAGACGGAGGGAGACCGACAGAGAAAACGAAAAAATGGCTGATCAACTCACAGAGGAGCAGATAGCTGAGTTCAAAGAGGCGTTCTCACTATTTGACAAAGATGGGGATGGCACCATCACCACGAAAGAGCTGGGCACTGTCATGCGCTCCCTTGGCCAGAACCCTACAGAGGCGGAGCTGCAGGATATGATCAATGAGGTGGATGCAGATGGCAATGGAACAATAGACTTCCCCGAGTTCCTGACCATGATGGCTAGAAAGATGAAGGACACAGACAGCGAGGAGGAGATCAGAGAAGCTTTCCGCGTCTTTGATAAGGATGGGAACGGATATATTAGCGCTGCTGAGCTGCGCCATGTGATGACAAACCTGGGGGAGAAATTAACAGATGAGGAGGTGGATGAAATGATTAGAGAAGCAGACATTGATGGAGATGGTCAGGTCAATTATGAAGAATTTGTACAGATGATGACAGCGAAGTGAAGGCCTTGTACAGAATTTCTTGTATAAAAATTATCtgccttttcttgtttttaatttctgtaaaatgtttcattttaatttctcccCATCCTCTCCTGCTGTCCAAAGGATCTGCATGTATACTATAAGATTTGAGTGCTCATGTCCCCCCCCCCAACTCATAGTCATCGTGAACGGTCTGTTAGAAGGAGCAGTTATGGGACCAGGTGATACGTATAGGCACAGATACTGACTACGCACAGGcccctttttttcctctctctctcttttgctctgTCTGCCTGCCCACCTGACGAGTGGCGACATCAAGGGTCCAGCTGACTCACGGCGTGGCATCATTTCAACAATTTTTGgcatgattctttttttttttttttttttcttcttcttttgatttttatgtGGAGGTGCAACTCTGCATGGACAATGGACTGAGTATAAATAGAAATGGGAAAAGTCCTCAGCATTGCACTATTGCAACATTGTTGAATTAAATACTAACGGGTTTATCGCCAGGTACTCATACACTCTaatctttttgtatttgttctGTTCTTACTATGCTTTTTAATTAGTCACTTTTCTTTTGTAACTGCTTATGGCACAGCCAGGCCTCAGAATCCATTCCAagttgtatatttgttttccaataaaattaacaatttaccCAAAAA

Function

symbol description
calm1 Enables several functions, including N-terminal myristoylation domain binding activity; enzyme activator activity; and enzyme binding activity. Involved in several processes, including positive regulation of hydrolase activity; regulation of calcium ion transmembrane transport; and regulation of heart contraction. Located in microtubule cytoskeleton and sarcomere. Part of calcium channel complex and catalytic complex. Implicated in catecholaminergic polymorphic ventricular tachycardia 4 and long QT syndrome 14. Biomarker of Alzheimer's disease.

NR:

description
PREDICTED: calmodulin-like

GO:

id name namespace
GO:0022400 regulation of rhodopsin mediated signaling pathway biological_process
GO:0001975 response to amphetamine biological_process
GO:0007190 activation of adenylate cyclase activity biological_process
GO:0045087 innate immune response biological_process
GO:0010881 regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion biological_process
GO:0051412 response to corticosterone biological_process
GO:0007202 activation of phospholipase C activity biological_process
GO:0005513 detection of calcium ion biological_process
GO:0002027 regulation of heart rate biological_process
GO:0000086 G2/M transition of mitotic cell cycle biological_process
GO:0030168 platelet activation biological_process
GO:0002576 platelet degranulation biological_process
GO:0038095 Fc-epsilon receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0035307 positive regulation of protein dephosphorylation biological_process
GO:1901841 regulation of high voltage-gated calcium channel activity biological_process
GO:1901844 regulation of cell communication by electrical coupling involved in cardiac conduction biological_process
GO:0043647 inositol phosphate metabolic process biological_process
GO:0043388 positive regulation of DNA binding biological_process
GO:1901339 regulation of store-operated calcium channel activity biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0051000 positive regulation of nitric-oxide synthase activity biological_process
GO:0048011 neurotrophin TRK receptor signaling pathway biological_process
GO:0032465 regulation of cytokinesis biological_process
GO:0005980 glycogen catabolic process biological_process
GO:0051343 positive regulation of cyclic-nucleotide phosphodiesterase activity biological_process
GO:0032516 positive regulation of phosphoprotein phosphatase activity biological_process
GO:0016310 phosphorylation biological_process
GO:0046209 nitric oxide metabolic process biological_process
GO:0006006 glucose metabolic process biological_process
GO:0060315 negative regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0060316 positive regulation of ryanodine-sensitive calcium-release channel activity biological_process
GO:0007173 epidermal growth factor receptor signaling pathway biological_process
GO:0034704 calcium channel complex cellular_component
GO:0030426 growth cone cellular_component
GO:0005813 centrosome cellular_component
GO:0000922 spindle pole cellular_component
GO:0005829 cytosol cellular_component
GO:0005576 extracellular region cellular_component
GO:0005876 spindle microtubule cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0030017 sarcomere cellular_component
GO:0043548 phosphatidylinositol 3-kinase binding molecular_function
GO:0043274 phospholipase binding molecular_function
GO:0017022 myosin binding molecular_function
GO:0031800 type 3 metabotropic glutamate receptor binding molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0008179 adenylate cyclase binding molecular_function
GO:0030235 nitric-oxide synthase regulator activity molecular_function
GO:0019904 protein domain specific binding molecular_function
GO:0050998 nitric-oxide synthase binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0005246 calcium channel regulator activity molecular_function
GO:0072542 protein phosphatase activator activity molecular_function
GO:0031432 titin binding molecular_function
GO:0044325 ion channel binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0031996 thioesterase binding molecular_function
GO:0031997 N-terminal myristoylation domain binding molecular_function

KEGG:

id description
K02183 CALM; calmodulin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254204.1 True 1251 mRNA 0.43 6 10944753 10949041

Neighbor

gene id symbol gene type direction distance location
fshr fshr,LOC107582855,LOC107673646,LOC107728706 coding upstream 47473 10888133 ~ 10897280 (+)
nrxn1a nrxn1a,LOC107673642,LOC107582788,LOC107749365 coding upstream 80308 10707898 ~ 10864445 (+)
asb3 asb3,LOC107738981,LOC107549406,LOC107657482,LOC107749367,LOC107686373 coding upstream 324267 10614193 ~ 10620486 (+)
psme4b psme4b,LOC107749369,LOC107584369,LOC107686372,LOC107657478,LOC108426507 coding upstream 335603 10585082 ~ 10609150 (+)
jcada si:ch211-203c7.2,LOC107686368,LOC107749373,LOC107584373,LOC107657479,LOC107738977,LOC107549409 coding upstream 427761 10507843 ~ 10516992 (+)
gch2 gch2,LOC107550032,LOC108429343,LOC105896951,LOC105006138 coding downstream 51813 11000854 ~ 11004942 (+)
pigf pigf,LOC107698824,LOC107550047,LOC107749355,LOC107582779,LOC107728710,LOC107700117 coding downstream 57923 11006964 ~ 11013659 (+)
mta3 LOC107698822,LOC107582777,LOC107728718,LOC107700107,LOC108430512 coding downstream 106653 11055694 ~ 11082276 (+)
ppm1bb ppm1bb,LOC107582773,LOC107698817,LOC107749348,LOC107550052,LOC107700122,LOC108430462,LOC108273990,LOC107739221 coding downstream 192583 11141624 ~ 11165042 (+)
six3b six3b,LOC107550037,LOC107698799,LOC107582771,LOC107739239,LOC107749382,LOC107700110 coding downstream 261210 11210251 ~ 11212765 (+)
LOC122355308 NA non-coding upstream 4924 10916186 ~ 10939829 (+)
G87181 NA non-coding upstream 55128 10889418 ~ 10889625 (+)
LOC122355662 NA non-coding upstream 845812 10078468 ~ 10098941 (+)
G87095 NA non-coding upstream 983795 9960647 ~ 9960958 (+)
G87094 NA non-coding upstream 984784 9959738 ~ 9959969 (+)
LOC122355200 NA non-coding downstream 5617 10954658 ~ 10955795 (+)
G87207 LOC107582782,LOC107698827,LOC107728716,LOC107550046,LOC107673648,LOC107550045 non-coding downstream 32237 10981278 ~ 10987710 (+)
G87210 NA non-coding downstream 47689 10996730 ~ 10996994 (+)
G87222 NA non-coding downstream 91627 11040668 ~ 11040906 (+)
G87220 LOC107749353,LOC107550036,LOC107698821,LOC107700109,LOC107728709,LOC107582776 non-coding downstream 133159 11082200 ~ 11089057 (+)
svila LOC107686370,LOC107657481,LOC107584371,LOC107749370,LOC107549408 other upstream 362208 10523143 ~ 10582545 (+)
LOC122355633 rhoq other upstream 445055 10497425 ~ 10499698 (+)
LOC122355192 opn4b,LOC107552747,LOC107739286,LOC107568552,LOC107582762,LOC107700131 other upstream 448476 10481492 ~ 10496277 (+)
LOC122355255 NA other upstream 1045752 9883033 ~ 9899001 (+)
LOC122355252 fam20cl,LOC107741571,LOC107664989,LOC107570372,LOC108436593,LOC102782963,LOC108259419 other upstream 1070238 9864814 ~ 9874515 (+)
G87315 zeb1b,LOC107666916,LOC107706887,LOC107727309,LOC107582755,LOC107552760,LOC107669492 other downstream 745803 11694844 ~ 11701655 (+)
hoxb6b hoxb6b,LOC107669478,LOC107706870,LOC107582852,LOC107552740,LOC107666911,LOC107727299 other downstream 933110 11882151 ~ 11884097 (+)
nbr1a nbr1,LOC107669491,LOC107706899,LOC107582742,LOC107727312,LOC107666919 other downstream 987800 11936841 ~ 11945635 (+)
G87817 NA other downstream 1783723 12732764 ~ 12737649 (+)
gall si:rp71-1c10.8,LOC107677873,LOC107743798,LOC107675007,LOC107566084,LOC107754084,LOC107563807 other downstream 1811333 12760374 ~ 12762731 (+)

Expression


Co-expression Network