plekhs1.1 (LOC107566815,LOC107755416,LOC107702419)


Basic Information

Item Value
gene id plekhs1.1
gene name LOC107566815,LOC107755416,LOC107702419
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056710.1
NCBI id CM032079.1
chromosome length 20499150
location 13405793 ~ 13410281 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254222.1
AAAAAACTCCACCTGCTTCAGCAACAATAGAAGCCTTCCTTTAACATCATGACATACATATTTGTGAAAACAGAACAGCAGTACAGAGGACACTGTTTTTACTGCGACACACACAATAGATAAGATTCAACATCATCCAAATGAACGGCAGCGCCAAATCAGATTTAAATGCTTCAAGTCACAATGAAGCAGCTGAGGTTGAGGAAGTGTGCACAGGTTTTCTAACAAAGTCCCCTCCTTCTAGACAGATTAAAAATACGAAATCATGGAAGAAACGCTTCTTCGTGCTTTCAAAGACAAATGACAGCTGCCATGAGCTAAAATACTACAAAACCACTGAGAGAGACAAACCCATTAAATCCATACAAGCTTCAACCATCACAATGCTGCAAGTGCATCCTCAAGCAAATCCTGTTTTTGAATGGATCTGTAAAGCCTTCAAGTGCTCTCCGACCTCTGTGCTCTACATGAAAGCAGCAAATCCAGGAGACAAGGTCCCAAGAGAATTTTTCTTCATTGGAGAGAGCAGtgagGATATGGATAGATGGTTCAATGCTATATTCGGGGCTATAAAGAATAACAAAATTAAGTCACAAACTGAAACTGAGAGCATGACTGAATCCAACTCCAATGACCAAAGCATCTCTGACAATGAGGAGAAAAAAGTTGATAGTAAACCTCCACTGCCTCCAAGGAAGAAGCCAGCATCTGAAGATGTTTCCATCCAGCAGAGTCAATGTAGCCAATCACCCAGAAGCAGCCTATCCGCAGCACCGGTGTATACAAATCTGAAAGAAGAGGAACCACTGAATGAAACTGCAGTGGAAAGTAACGAGGACAGGTCATCAATGGATAGCATGACTTGTACATCTGAAGACAGTTTGTTGGATTGTGTCACAAAGGCCTTCAGTGATATGAAGACGCCACAAACGGCCGCCGAATCAGACGGACAAAGTGAAATGCACACCCTTGTCGAGAAGGAAATCTGCATCAGTCATCATGATGCAAACAGCTTGGTTTTTACAGAGGAGGAGGGTAAACCATGtGTATCTAAATGTGGGGTGATAGAGGCTTCATCTCTGTTCCACAAGGGAGATCAGATACTGGCTGTCAATGACCTGTTGACAGACACCGTGGAGGAGGTACAAACATACCTAAGAAGACTCAGCAAGAGAGAGGTAAAACTGACAATTCGAAGGCTCCCAGGCTCCATTCCTTTGAATTCTGAACCCTGCtgagaacacaaacaaaatttCATGCTGCGCTATGGTTCTTCGTTTGCTTTTTTAGGCCTTTCGATTGTCTCTTAAGAAtcagtgtgaaatattttttaaataattctagtAGTAGTGCTGTAATGTAGTCTTTCTTTTGGTGATTTCTGAAAAACTTCACTGACATTTATGATTTGTGTCAGATCGTACAGGCTGAAAGTATTGCTTTTCACACAACCTTGAAGGGCATACAGGTTTTCAACAGTAAAACTAGACTTGTTTAGCTTTTGtcattctaaaaatattaatcacaattttgtGAACCTGTGAATTTCATTTACCTGCAGTATATTTTGTAGCCACTTGGTGGCAGATTAACACTGAATTCTGATTGCTTCTGTTCAGCATGTAAATTCACATCCAAGTATCTTTTATTATATCACTTTggcaaataatgtttttagttttttttagtttttgtttttttttacaaacggATGTATTATTGCAGTCACACTAAAACCTGTCATGTTGGTAGcaaatccaaatgtttttttcaaattctaACTTGGTTTagatattataatgtaataaatatatgcaaaaacaacataaaaatccTTAAGAACTGACACTGTTCAGCATGCTAATGACTTACATGCTGAACAATATTTACCTTGTATATGcacaaataagaaataaaatttgattCAGAGAACAAGACCACCAATGAAA

Function

NR:

description
PREDICTED: GRB2-associated-binding protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254222.1 True 1949 mRNA 0.39 13 13405793 13410281

Neighbor

gene id symbol gene type direction distance location
nhlrc2 nhlrc2,LOC107755539,LOC107708141,LOC107702418,LOC107684116 coding downstream 7406 13381644 ~ 13398387 (-)
adrb1 adrb1,LOC107755541,LOC107566002,LOC107702449,LOC107689959,LOC107581665 coding downstream 30305 13372489 ~ 13375488 (-)
tdrd1 LOC107702448,LOC107755540,LOC107566104,LOC107581549,LOC107708149,LOC107689961 coding downstream 71001 13325153 ~ 13334792 (-)
vwa2 vwa2,LOC107755546,LOC107702446,LOC107707947 coding downstream 81098 13307621 ~ 13324695 (-)
LOC122355472 NA coding downstream 109539 13293736 ~ 13296254 (-)
LOC122355682 NA coding upstream 3900 13414181 ~ 13418256 (-)
LOC122355076 LOC107566710,LOC107684141,LOC107581554 coding upstream 8436 13418717 ~ 13422958 (-)
casp7 casp7,LOC107707870,LOC107684033,LOC107581558,LOC107566160 coding upstream 26626 13436907 ~ 13444732 (-)
crygmx crygmx,LOC107755411,LOC107566847,LOC107684144,LOC107581668 coding upstream 143275 13553556 ~ 13555025 (-)
crygmxl2 crygmxl2,LOC107566855,LOC107708427,LOC107702435,LOC107581669,LOC107684145 coding upstream 145412 13555693 ~ 13557090 (-)
G88003 NA non-coding downstream 37473 13365953 ~ 13368320 (-)
G87860 gabrz,LOC108273489,LOC107675029,LOC107754081,LOC107565977 non-coding downstream 598147 12804696 ~ 12807646 (-)
LOC122355629 NA non-coding downstream 767057 12613150 ~ 12638736 (-)
G87746 NA non-coding downstream 918398 12438750 ~ 12487395 (-)
G87695 LOC107669482,LOC107552775 non-coding downstream 1058727 12344898 ~ 12347066 (-)
G88019 NA non-coding upstream 23613 13433894 ~ 13434125 (-)
G88034 nrap,LOC107755535,LOC107702452 non-coding upstream 48175 13458456 ~ 13459865 (-)
G88035 nrap,LOC107702452,LOC107755535 non-coding upstream 49864 13460145 ~ 13461245 (-)
LOC122355666 NA non-coding upstream 298774 13709055 ~ 13712541 (-)
G88146 NA non-coding upstream 414319 13824600 ~ 13894358 (-)
G87845 LOC107675011 other downstream 653115 12751904 ~ 12752678 (-)
prr15lb prr15lb,LOC107754107,LOC107675003,LOC107565730,LOC107743781,LOC107677864,LOC107563795 other downstream 730321 12649383 ~ 12675472 (-)
G87608 NA other downstream 1454638 11948540 ~ 11951155 (-)
G87569 NA other downstream 1570181 11832879 ~ 11835612 (-)
G87489 NA other downstream 2083190 11321423 ~ 11322603 (-)
LOC122355808 LOC107684141,LOC107702421,LOC107581556,LOC107684142,LOC107708119,LOC107708127 other upstream 14027 13424308 ~ 13432195 (-)
entpd1 LOC107707825,LOC107755533,LOC107581561,LOC107702455,LOC107684037,LOC107566185 other upstream 113387 13523668 ~ 13540301 (-)
tcf7l2 tcf7l2,LOC107755529,LOC107702422,LOC107750316,LOC107566231,LOC106949585,LOC106589326 other upstream 199139 13609420 ~ 13691340 (-)
srsf2a srsf2,LOC107702465,LOC107566380,LOC107684046 other upstream 562601 13972882 ~ 13976511 (-)
G88250 LOC107702476 other upstream 737766 14148047 ~ 14150005 (-)

Expression


Co-expression Network